prot_H-paniculata_contig18272.4464.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig18272.4464.1
Unique Nameprot_H-paniculata_contig18272.4464.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length164
Homology
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BLAST of mRNA_H-paniculata_contig18272.4464.1 vs. uniprot
Match: A0A6H5JY66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY66_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.610e-26
Identity = 48/73 (65.75%), Postives = 57/73 (78.08%), Query Frame = 0 
Query:   28 RRLEYCDDGFWLVTPRGGGFPFYGTKECAYHPADIYRTAVWNMVECEGCGSQPMNDTVT--ISCDDEGYVAPP 98
            R+LE CDDGFWL+TPRGGGFPFYGT  CA HPADI   A W++VEC+GCGS+P++ TVT  ISCD   +  PP
Sbjct:  845 RKLEVCDDGFWLITPRGGGFPFYGTLNCADHPADISNLAAWSVVECDGCGSEPLDGTVTVTISCDGADFTPPP 917
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18272.4464.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JY66_9PHAE1.610e-2665.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 163..163
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..141
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 142..162
NoneNo IPR availableTMHMMTMhelixcoord: 142..161

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18272contigH-paniculata_contig18272:2502..3922 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18272.4464.1mRNA_H-paniculata_contig18272.4464.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig18272 1577..3940 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig18272.4464.1 ID=prot_H-paniculata_contig18272.4464.1|Name=mRNA_H-paniculata_contig18272.4464.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp
MAMNFREDEEQNSNSIWSRSDRDSMNDRRLEYCDDGFWLVTPRGGGFPFY
GTKECAYHPADIYRTAVWNMVECEGCGSQPMNDTVTISCDDEGYVAPPTP
APVPTRSPVLTSSTPAPSVSGDGDRAVTDTGAVAPGRGGDGVGLLFVCFL
SVAAAMTGAVMVT*
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