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Homology
BLAST of mRNA_H-paniculata_contig18272.4464.1 vs. uniprot
Match: A0A6H5JY66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY66_9PHAE) HSP 1 Score: 114 bits (286), Expect = 2.360e-23 Identity = 48/73 (65.75%), Postives = 57/73 (78.08%), Query Frame = 1
Query: 100 RRLEYCDDGFWLVTPRGGGFPFYGTKECAYHPADIYRTAVWNMVECEGCGSQPMNDTVT--ISCDDEGYVAPP 312
R+LE CDDGFWL+TPRGGGFPFYGT CA HPADI A W++VEC+GCGS+P++ TVT ISCD + PP
Sbjct: 845 RKLEVCDDGFWLITPRGGGFPFYGTLNCADHPADISNLAAWSVVECDGCGSEPLDGTVTVTISCDGADFTPPP 917
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-12_008780.1 |
| Exons | 2 |
| Model size | 1435 |
| Cds size | 492 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18272.4464.1 >prot_H-paniculata_contig18272.4464.1 ID=prot_H-paniculata_contig18272.4464.1|Name=mRNA_H-paniculata_contig18272.4464.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp
MAMNFREDEEQNSNSIWSRSDRDSMNDRRLEYCDDGFWLVTPRGGGFPFY
GTKECAYHPADIYRTAVWNMVECEGCGSQPMNDTVTISCDDEGYVAPPTP
APVPTRSPVLTSSTPAPSVSGDGDRAVTDTGAVAPGRGGDGVGLLFVCFL
SVAAAMTGAVMVT* back to topmRNA from alignment at H-paniculata_contig18272:1577..3940- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig18272.4464.1 ID=mRNA_H-paniculata_contig18272.4464.1|Name=mRNA_H-paniculata_contig18272.4464.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2364bp|location=Sequence derived from alignment at H-paniculata_contig18272:1577..3940- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCGAGCGCTAGAAGAGATGGCGATGAACTTCCGCGAAGACGAAGAACA
GAACTCCAATTCTATCTGGAGCAGAAGCGACAGGGACTCGATGAACGATC
GAAGGCTAGAGTACTGCGATGATGGGTTTTGGCTCGTCACCCCGCGGGGC
GGAGGCTTTCCTTTTTATGGGGTAAGTTGGCGTAAGCGACAAGAGTCCTA
GCAACGGGAGCATTTTACCCTTGAAATAAAAGACCAAAATGGGTCTCTGT
GTCCCCTACTCCAGCCGTTTGAGGGGGGGCTATCGAAATTGGGGACTTGT
TTTGCAGCAAAAAAATCCGCGATATCTTGCTTGTACAAGGTCTTTTTTTT
GCTGGACGGTTTTGCCCAGATTTTTGTTTTTTGGCAAAATGGCCTTGATA
CGAAATAGTTTGAGTGAAGCAGATCCATGTATGAGGTATTGTATTTCCTT
CTCATTTCCCGTTAGCTCTGTTGATCCCTTCTTTCAAGCTCCGTAATCTA
CGCTGTCCCTCCCTGGCTGGTCATCTTTGTCGACTCGCTTCAGCATACAA
CAGACAATTATGGAGCCTTGTAGCTTTGATCAATTCAAACGCACGTTTGT
GTTGCAACACATGTTAATGTGAGCTGAAGCACGACCCCGCACCTACCGTA
CTATACGGTGTTTTCGCACCCCCTGGTATGATTTTTCAAACTCGATTTTT
GTCGAGAACGACGGTGCTTATGACACGGACAATGGTGTTTTTGGAAATAT
CTCCTCGAGATCTTTCGATAGATCCTGCTATTTCGCCAGTGCAGGCTCTT
GCTTCTCGAGAAAATCGAGTCTGAAAAACAACGTCGAGGTGCGATAACCC
TGTACATTACGGTATATACTGATGAGAAGGTACATGTACCTGTGAAACAA
AAGCTCCGTACCTCGTTATAACGGGCCATGTACCAGAAAAGTAACATGTA
AAATTCACTATAATAGTATAAACACCGTTTTCCGAGGCTCTGTTAGACAG
GCCAGTTACTCCTGTCTGATTTTGGTGACACACAACTCATCTGCGTTCCG
ATTCTTATACATGCAAGCGGTACCCTCCCCCCCCCACTAAAACTCCGCAG
ACAAAAGAATGCGCGTATCATCCTGCCGACATCTACCGCACGGCCGTCTG
GAACATGGTCGAGTGCGAAGGTTGTGGTTCCCAGCCGATGAACGATACGG
TCACAATATCTTGCGACGACGAGGGATACGTGGCGCCTCCTACTCCCGCT
CCTGTTCCCACCCGCTCTCCAGTCTTGACATCATCCACACCGGCGCCAAG
TGTCTCCGGAGATGGCGACAGAGCGGTCACCGATACTGGCGCCGTGGCGC
CAGGTCGAGGTGGAGACGGAGTGGGACTGCTGTTTGTTTGTTTCCTATCC
GTGGCTGCTGCGATGACGGGGGCGGTGATGGTCACATGAGGAAGGAATAG
AGGGAGGAAATGGAAGTTGGTGGTGGTGGTGGTGGTAGTTTACTTGGTTT
TGCCATTGAGTGTATCTTTGTCCTTCTCTTTTTATCCCCCTGTAGTCTAA
GGTAATAACTGATTATCTCTAGGGTAGTGCAGCAGGTAAAGATTGGGAGA
AGTGCTGTGTTTGTTGTTAAACGGCACGTGTAGTGTAAACGTGGTCCGGC
AAATTGAGCTTTGGTTTTTGGTTTTTGGTCGTTTTTTCGCGGGTCGCCGA
AGTGCCCGCGTGTCTGCTCGCCGAACAGTCGAGCATTCGCTCGAGTTCGT
GTGACTGGTATATTCCTTGTGTAATTTAGCCGAGAGGAGAGCAGGTTTGT
GTGAGACACATGGGCAGACAGGAACCCAGACCGTACGTGACATGAGTCCA
TCAATCAATGCTGTACTGCTCCAAATTTTCTCCACCTGACGGGCATTGAG
TAAAAGCTGGCTCCATTTGGTTTTGCTGTAGAAGGGGTTTGAGCCAGCCT
GCTGTGGAGAGCTCACGTGTCGATCAAATAATGCTTCCGTCAAAACTTGA
GAAATAGGAATCTTTTCCAATCGGCCGATCAATTCCGCCGAAAGCCGATG
TGGGAAAAAGATACTCTGTAGAAAGGAATAGTCACAGAAAAAAAAGCATC
TATAGGCAGACAAAGCCTCTCTTCATGGGATAACTATTGTATTGGTTGGT
ATGAGTAGAAAGAGGAAACTCGTGTCCAAGTTATGTTTTTGTCCATTATT
ATTATTATTTTTTTCGTCTATACTGGGAAGAGACGGGTTTTTTCTGGAAA
AACAGCAGTAGATCTAAGAGTCAGTTTTCTTTCGCGTTTGTTTTGTCGGT
GGGTTTCGTGGATGTCGATTTTATTTCATTGAACGATCGACCGATCTCAT
TCCGTCGCCCCATT back to topCoding sequence (CDS) from alignment at H-paniculata_contig18272:1577..3940- >mRNA_H-paniculata_contig18272.4464.1 ID=mRNA_H-paniculata_contig18272.4464.1|Name=mRNA_H-paniculata_contig18272.4464.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at H-paniculata_contig18272:1577..3940- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGATGAACTTCCGCGAAGACGAAGAACAGAACTCCAATTCTATCTG
GAGCAGAAGCGACAGGGACTCGATGAACGATCGAAGGCTAGAGTACTGCG
ATGATGGGTTTTGGCTCGTCACCCCGCGGGGCGGAGGCTTTCCTTTTTAT
GGGATGGCGATGAACTTCCGCGAAGACGAAGAACAGAACTCCAATTCTAT
CTGGAGCAGAAGCGACAGGGACTCGATGAACGATCGAAGGCTAGAGTACT
GCGATGATGGGTTTTGGCTCGTCACCCCGCGGGGCGGAGGCTTTCCTTTT
TATGGGACAAAAGAATGCGCGTATCATCCTGCCGACATCTACCGCACGGC
CGTCTGGAACATGGTCGAGTGCGAAGGTTGTGGTTCCCAGCCGATGAACG
ATACGGTCACAATATCTTGCGACGACGAGGGATACGTGGCGCCTCCTACT
CCCGCTCCTGTTCCCACCCGCTCTCCAGTCTTGACATCATCCACACCGGC
GCCAAGTGTCTCCGGAGATGGCGACAGAGCGGTCACCGATACTGGCGCCG
TGGCGCCAGGTCGAGGTGGAGACGGAGTGGGACTGCTGTTTGTTTGTTTC
CTATCCGTGGCTGCTGCGATGACGGGGGCGGTGATGGTCACATGAACAAA
AGAATGCGCGTATCATCCTGCCGACATCTACCGCACGGCCGTCTGGAACA
TGGTCGAGTGCGAAGGTTGTGGTTCCCAGCCGATGAACGATACGGTCACA
ATATCTTGCGACGACGAGGGATACGTGGCGCCTCCTACTCCCGCTCCTGT
TCCCACCCGCTCTCCAGTCTTGACATCATCCACACCGGCGCCAAGTGTCT
CCGGAGATGGCGACAGAGCGGTCACCGATACTGGCGCCGTGGCGCCAGGT
CGAGGTGGAGACGGAGTGGGACTGCTGTTTGTTTGTTTCCTATCCGTGGC
TGCTGCGATGACGGGGGCGGTGATGGTCACATGA back to top
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