prot_H-paniculata_contig18270.4462.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig18270.4462.1
Unique Nameprot_H-paniculata_contig18270.4462.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length62
Homology
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Match: A0A5N6NAJ6_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NAJ6_9ASTR)

HSP 1 Score: 53.5 bits (127), Expect = 1.030e-6
Identity = 23/61 (37.70%), Postives = 34/61 (55.74%), Query Frame = 0
Query:    1 MTRSKIITANMGRMYWSEATRAAVYCVNRTPRRPHNGGMPYEKWHGTTPKLDHLHIFDCTA 61
            M RS +   N+ R +W EA+R A++ +NR P +      PYE   G+ P L+HL +F C  
Sbjct:  626 MVRSMLKENNVPRSFWGEASRHAIFILNRVPTKAVCHMTPYEALKGSKPNLEHLRVFGCVG 686          
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Match: A0A0K8T7S9_LYGHE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8T7S9_LYGHE)

HSP 1 Score: 51.2 bits (121), Expect = 5.740e-6
Identity = 22/62 (35.48%), Postives = 35/62 (56.45%), Query Frame = 0
Query:    1 MTRSKIITANMGRMYWSEATRAAVYCVNRTPRRP-HNGGMPYEKWHGTTPKLDHLHIFDCTA 61
            M R  ++ + +G+ +W EA R AVY +NR P +   +G  P E W+G    L ++ +F C A
Sbjct:   25 MARCLVMDSPLGKEFWGEAVRTAVYLINRLPTKALPDGKTPAEVWYGRPVDLSNIRVFGCRA 86          
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Match: A0A0A9Y7S5_LYGHE (Copia protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y7S5_LYGHE)

HSP 1 Score: 51.2 bits (121), Expect = 6.560e-6
Identity = 22/62 (35.48%), Postives = 35/62 (56.45%), Query Frame = 0
Query:    1 MTRSKIITANMGRMYWSEATRAAVYCVNRTPRRP-HNGGMPYEKWHGTTPKLDHLHIFDCTA 61
            M R  ++ + +G+ +W EA R AVY +NR P +   +G  P E W+G    L ++ +F C A
Sbjct:  291 MARCLVMDSPLGKEFWGEAVRTAVYLINRLPTKALPDGKTPAEVWYGRPVDLSNIRVFGCRA 352          
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Match: A0A4C1SBF3_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1SBF3_EUMVA)

HSP 1 Score: 50.4 bits (119), Expect = 1.270e-5
Identity = 19/46 (41.30%), Postives = 28/46 (60.87%), Query Frame = 0
Query:   16 WSEATRAAVYCVNRTPRRPHNGGMPYEKWHGTTPKLDHLHIFDCTA 61
            W+E  ++A+Y +NRT R       P+E WHGT P+++HL I   T 
Sbjct:  596 WAEFVKSAIYILNRTGRSSVKDKSPFELWHGTKPRINHLRIIGSTC 641          
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Match: A0A8D9ATH0_9HEMI (Copia protein n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9ATH0_9HEMI)

HSP 1 Score: 49.3 bits (116), Expect = 3.230e-5
Identity = 21/59 (35.59%), Postives = 34/59 (57.63%), Query Frame = 0
Query:    3 RSKIITANMGRMYWSEATRAAVYCVNRTPRRPHNGGMPYEKWHGTTPKLDHLHIFDCTA 61
            R  ++++ + +  WSEA RAAVY +NR+P    +  +P   W+G  P ++ L IF   A
Sbjct:  614 RCMLLSSGLPKFLWSEAVRAAVYLLNRSPTSALSNCVPATLWYGQKPNINKLRIFGSPA 672          
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Match: A0A2I0VQ35_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VQ35_9ASPA)

HSP 1 Score: 49.3 bits (116), Expect = 3.250e-5
Identity = 22/58 (37.93%), Postives = 32/58 (55.17%), Query Frame = 0
Query:    2 TRSKIITANMGRMYWSEATRAAVYCVNRTPRRPHNGGMPYEKWHGTTPKLDHLHIFDC 59
            +R+ + TA++   YW EA   +VY +NR P        P+E +H T P+ DHL  F C
Sbjct:  635 SRTLLNTASIPYNYWPEAILTSVYLINRMPSPNTTNLSPFELFHKTQPRYDHLRTFGC 692          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A5N6NAJ6_9ASTR1.030e-637.70Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A0K8T7S9_LYGHE5.740e-635.48Integrase catalytic domain-containing protein (Fra... [more]
A0A0A9Y7S5_LYGHE6.560e-635.48Copia protein (Fragment) n=1 Tax=Lygus hesperus Ta... [more]
A0A4C1SBF3_EUMVA1.270e-541.30Retrovirus-related Pol polyprotein from transposon... [more]
A0A8D9ATH0_9HEMI3.230e-535.59Copia protein n=1 Tax=Cacopsylla melanoneura TaxID... [more]
A0A2I0VQ35_9ASPA3.250e-537.93Retrovirus-related Pol polyprotein from transposon... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 12..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18270contigH-paniculata_contig18270:4500..4685 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18270.4462.1mRNA_H-paniculata_contig18270.4462.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig18270 4407..4751 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig18270.4462.1 ID=prot_H-paniculata_contig18270.4462.1|Name=mRNA_H-paniculata_contig18270.4462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
MTRSKIITANMGRMYWSEATRAAVYCVNRTPRRPHNGGMPYEKWHGTTPK
LDHLHIFDCTA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf