mRNA_H-paniculata_contig18270.4462.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18270.4462.1
Unique NamemRNA_H-paniculata_contig18270.4462.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Match: A0A2M4CK12_ANODA (Putative pol polyprotein (Fragment) n=1 Tax=Anopheles darlingi TaxID=43151 RepID=A0A2M4CK12_ANODA)

HSP 1 Score: 100 bits (249), Expect = 2.560e-22
Identity = 48/111 (43.24%), Postives = 67/111 (60.36%), Query Frame = 1
Query:   13 GIKQEFSAAFTPQQDGVAERSWRSVFKMTRSKIITANMGRMYWSEATRAAVYCVNRTPRRPHNGGMPYEKWHGTTPKLDHLHIFDCTA*VMFQSQQRRKFDDKAWLGAFLG 345
            GIK +++A+++PQQ+GVAER  RS+ +M R  +  A + + YW+EA   AVY  N +P +P N   PYE WHG  PK++HL IF C A       +R+K    A    FLG
Sbjct:  123 GIKPQYTASYSPQQNGVAERKNRSLIEMVRCMLFDAQLEQKYWAEAMNTAVYLQNISPTKPRNN-TPYETWHGVKPKVNHLRIFGCDAWAHIPKAKRKKLGATAQKLTFLG 232          
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Match: A0A3S3NIE3_9ACAR (Uncharacterized protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3NIE3_9ACAR)

HSP 1 Score: 100 bits (248), Expect = 3.540e-22
Identity = 48/112 (42.86%), Postives = 65/112 (58.04%), Query Frame = 1
Query:   10 NGIKQEFSAAFTPQQDGVAERSWRSVFKMTRSKIITANMGRMYWSEATRAAVYCVNRTPRRPHNGGMPYEKWHGTTPKLDHLHIFDCTA*VMFQSQQRRKFDDKAWLGAFLG 345
            NGI  +++A +TPQQ+GVAER  R++ +M RS +  A M + +W EA   A Y  N  P +  NG  PYE W    P L H+ +F C A V    ++RRK+D KA    FLG
Sbjct:  341 NGIVHQYTAPYTPQQNGVAERKNRTLVEMARSMLFCAQMNKNFWGEAIVTATYIQNSCPNKALNGKTPYELWFEKRPSLKHMRVFGCEAFVHVPDEKRRKWDPKAIKCIFLG 452          
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Match: UPI000A2AF52F (uncharacterized protein LOC107607928 n=1 Tax=Arachis ipaensis TaxID=130454 RepID=UPI000A2AF52F)

HSP 1 Score: 100 bits (248), Expect = 3.580e-22
Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = 1
Query:   13 GIKQEFSAAFTPQQDGVAERSWRSVFKMTRSKIITANMGRMYWSEATRAAVYCVNRTPRRPHNGGMPYEKWHGTTPKLDHLHIFDCTA*VMFQSQQRRKFDDKAWLGAFLG 345
            GI+++F+ A+TPQQ+GVAER  R++ +  R+ + TA + + +W+EA + A Y +NR+P        P E W G  P    LHIF C   VM+ SQ+R K D K+    FLG
Sbjct:  268 GIQRQFTVAYTPQQNGVAERMNRTLLERARAMLQTAGLAKFFWAEAVKTACYVINRSPSTAIGLKTPMEMWQGKPPNYSSLHIFGCPVYVMYNSQERTKLDPKSRKCIFLG 378          
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Match: A0A4C1SWH4_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1SWH4_EUMVA)

HSP 1 Score: 94.4 bits (233), Expect = 4.450e-22
Identity = 44/104 (42.31%), Postives = 69/104 (66.35%), Query Frame = 1
Query:   10 NGIKQEFSAAFTPQQDGVAERSWRSVFKMTRSKIITANMGRMYWSEATRAAVYCVNRTPRRPHNGGMPYEKWHGTTPKLDHLHIFDCTA*VMFQSQQRRKFDDK 321
            +GI ++ + A+TPQQ+GVAER+ R++ +M+R+ ++ AN+G+  W+EA   AVY  NR+P +   G  P+E W+G  PK+ HL +F   A V     Q++KFD K
Sbjct:   22 HGIVRQLTVAYTPQQNGVAERANRTLVEMSRAMLLHANLGKHLWAEAVSTAVYLRNRSPTKALLGKTPFEVWYGYKPKVGHLRVFGSYA-VALDKTQKQKFDAK 124          
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Match: A0A0A9XZW0_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XZW0_LYGHE)

HSP 1 Score: 99.0 bits (245), Expect = 7.940e-22
Identity = 49/115 (42.61%), Postives = 71/115 (61.74%), Query Frame = 1
Query:    1 LCGNGIKQEFSAAFTPQQDGVAERSWRSVFKMTRSKIITANMGRMYWSEATRAAVYCVNRTPRRPHNGGMPYEKWHGTTPKLDHLHIFDCTA*VMFQSQQRRKFDDKAWLGAFLG 345
            L  +GI++ FSA +TPQQ+G+AER  RSV    R  ++ AN+   +W+EA   A Y +NR+P R  NG  P+E W G  P ++HL IF   A  + ++Q + KFD +A  G F+G
Sbjct:  102 LIDHGIQRRFSAPYTPQQNGLAERKNRSVLDKARCLLLEANLPDSFWAEAIFCANYLINRSPSRSLNGKTPFELWVGHPPTVNHLQIFGSKAFFLNKNQNKSKFDCRANDGIFVG 216          
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Match: UPI000E703791 (uncharacterized protein LOC113290509 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E703791)

HSP 1 Score: 98.2 bits (243), Expect = 1.630e-21
Identity = 46/112 (41.07%), Postives = 68/112 (60.71%), Query Frame = 1
Query:   10 NGIKQEFSAAFTPQQDGVAERSWRSVFKMTRSKIITANMGRMYWSEATRAAVYCVNRTPRRPHNGGMPYEKWHGTTPKLDHLHIFDCTA*VMFQSQQRRKFDDKAWLGAFLG 345
            +GIK++F+AAFTPQQ+GVAER  R++  M RS + T+ + + +W E  + +VY +NR+P +      P E W G  P + HL +F C A      ++R+K DDK     FLG
Sbjct:  438 DGIKRKFTAAFTPQQNGVAERKNRTILNMVRSVLYTSGVPKNFWPEVVQWSVYVLNRSPTQSVINMTPIEAWSGEKPCVSHLRVFGCIAYAHVPDEKRKKLDDKGVKCVFLG 549          
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Match: A0A4Y8W7M7_9VIBR (Transposase (Fragment) n=2 Tax=Vibrio ouci TaxID=2499078 RepID=A0A4Y8W7M7_9VIBR)

HSP 1 Score: 91.7 bits (226), Expect = 1.890e-21
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 1
Query:   13 GIKQEFSAAFTPQQDGVAERSWRSVFKMTRSKIITANMGRMYWSEATRAAVYCVNRTPRRPHNGGMPYEKWHGTTPKLDHLHIFDCTA*VMFQSQQRRKFDDKAWLGAFLG 345
            GIK++F+ A+TPQQ+GVAER  R++ + TR+ +  A +G+ +W+EA   A Y +NR+P        P E W G       LHIF     VM+ +Q+  K D K+    FLG
Sbjct:    8 GIKRQFTTAYTPQQNGVAERMNRTLLERTRAMLKAAGLGKSFWAEAVNTACYVINRSPSTAIELKTPMEMWTGKPADYSRLHIFGSPVYVMYNTQEVSKLDSKSRKCVFLG 118          
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Match: A0A4Y2LAF7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2LAF7_ARAVE)

HSP 1 Score: 94.7 bits (234), Expect = 9.970e-21
Identity = 45/111 (40.54%), Postives = 63/111 (56.76%), Query Frame = 1
Query:   13 GIKQEFSAAFTPQQDGVAERSWRSVFKMTRSKIITANMGRMYWSEATRAAVYCVNRTPRRPHNGGMPYEKWHGTTPKLDHLHIFDCTA*VMFQSQQRRKFDDKAWLGAFLG 345
            GI  + +  ++PQQ+GV+ER  R++ +M R  +  AN+ + +W+EA   A Y  NR P +P     PY  W    P L H+ +F C A    Q Q+RRK DDKA  G FLG
Sbjct:   94 GIVHQLTVPYSPQQNGVSERKNRTLIEMARCLLSDANLSQRFWAEAAMTATYLQNRLPTKPKRK-TPYVLWANRKPDLSHIRVFGCKAYACIQKQKRRKLDDKAVEGIFLG 203          
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Match: A0A2S2NXV8_SCHGA (Retrovirus-related Pol polyprotein n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2NXV8_SCHGA)

HSP 1 Score: 95.9 bits (237), Expect = 1.080e-20
Identity = 44/111 (39.64%), Postives = 62/111 (55.86%), Query Frame = 1
Query:   13 GIKQEFSAAFTPQQDGVAERSWRSVFKMTRSKIITANMGRMYWSEATRAAVYCVNRTPRRPHNGGMPYEKWHGTTPKLDHLHIFDCTA*VMFQSQQRRKFDDKAWLGAFLG 345
            GIK E S  +TPQQ+G AERS R++ +  R+ + + N+ +  W+EA    VY +NRT      G  PYE W   TP ++HL IF          ++RRK+D K   G F+G
Sbjct:  273 GIKHETSVPYTPQQNGKAERSMRTIVEAARTMLYSKNLSKTLWAEAVNTVVYTINRTGNTGQEGKTPYELWFNKTPDINHLKIFGTEVYAHIPKEKRRKWDQKGRKGIFVG 383          
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Match: Q9C7Y1_ARATH (Copia-type polyprotein, putative; 28768-32772 n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9C7Y1_ARATH)

HSP 1 Score: 95.9 bits (237), Expect = 1.100e-20
Identity = 46/104 (44.23%), Postives = 66/104 (63.46%), Query Frame = 1
Query:   13 GIKQEFSAAFTPQQDGVAERSWRSVFKMTRSKIITANMGRMYWSEATRAAVYCVNRTPRRPHNGGMPYEKWHGTTPKLDHLHIFDCTA*VMFQSQQRRKFDDKA 324
            GIK++ +AA+TPQQ+GVAER  RSV  MTR  ++  ++ R +W EA + AVY +NR+P +  N   P EKW    P ++HL IF   A  +   Q+R K D+K+
Sbjct:  583 GIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQYAVYILNRSPSKALNDITPEEKWSSWKPSVEHLRIFGSLAYALVPYQKRIKLDEKS 686          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2M4CK12_ANODA2.560e-2243.24Putative pol polyprotein (Fragment) n=1 Tax=Anophe... [more]
A0A3S3NIE3_9ACAR3.540e-2242.86Uncharacterized protein (Fragment) n=1 Tax=Dinothr... [more]
UPI000A2AF52F3.580e-2241.44uncharacterized protein LOC107607928 n=1 Tax=Arach... [more]
A0A4C1SWH4_EUMVA4.450e-2242.31Retrovirus-related Pol polyprotein from transposon... [more]
A0A0A9XZW0_LYGHE7.940e-2242.61Retrovirus-related Pol polyprotein from transposon... [more]
UPI000E7037911.630e-2141.07uncharacterized protein LOC113290509 n=1 Tax=Papav... [more]
A0A4Y8W7M7_9VIBR1.890e-2139.64Transposase (Fragment) n=2 Tax=Vibrio ouci TaxID=2... [more]
A0A4Y2LAF7_ARAVE9.970e-2140.54Retrovirus-related Pol polyprotein from transposon... [more]
A0A2S2NXV8_SCHGA1.080e-2039.64Retrovirus-related Pol polyprotein n=1 Tax=Schizap... [more]
Q9C7Y1_ARATH1.100e-2044.23Copia-type polyprotein, putative; 28768-32772 n=3 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18270contigH-paniculata_contig18270:4407..4751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.8
Seed ortholog evalue2.5e-07
Seed eggNOG ortholog4538.ORGLA02G0045100.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size345
Cds size186
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18270.4462.1prot_H-paniculata_contig18270.4462.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18270 4500..4685 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929419.629319-UTR-H-paniculata_contig18270:4406..44991622929419.629319-UTR-H-paniculata_contig18270:4406..4499Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18270 4407..4499 +
1691480853.5096097-UTR-H-paniculata_contig18270:4406..44991691480853.5096097-UTR-H-paniculata_contig18270:4406..4499Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18270 4407..4499 +
1622929419.66045-UTR-H-paniculata_contig18270:4685..47511622929419.66045-UTR-H-paniculata_contig18270:4685..4751Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18270 4686..4751 +
1691480853.536709-UTR-H-paniculata_contig18270:4685..47511691480853.536709-UTR-H-paniculata_contig18270:4685..4751Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18270 4686..4751 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929419.6440785-CDS-H-paniculata_contig18270:4499..46851622929419.6440785-CDS-H-paniculata_contig18270:4499..4685Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18270 4500..4685 +
1691480853.5212495-CDS-H-paniculata_contig18270:4499..46851691480853.5212495-CDS-H-paniculata_contig18270:4499..4685Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18270 4500..4685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18270.4462.1

>prot_H-paniculata_contig18270.4462.1 ID=prot_H-paniculata_contig18270.4462.1|Name=mRNA_H-paniculata_contig18270.4462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
MTRSKIITANMGRMYWSEATRAAVYCVNRTPRRPHNGGMPYEKWHGTTPK
LDHLHIFDCTA*
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mRNA from alignment at H-paniculata_contig18270:4407..4751+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18270.4462.1 ID=mRNA_H-paniculata_contig18270.4462.1|Name=mRNA_H-paniculata_contig18270.4462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at H-paniculata_contig18270:4407..4751+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTGCGGAAATGGCATAAAGCAAGAATTTTCTGCCGCCTTCACGCCTCA GCAAGATGGTGTGGCGGAGCGCAGCTGGCGTAGCGTTTTCAAGATGACCC GAAGTAAAATAATCACCGCCAACATGGGCCGCATGTATTGGTCGGAGGCG ACGCGGGCGGCTGTGTACTGCGTAAATCGCACCCCGAGGCGACCGCACAA CGGGGGAATGCCGTATGAGAAATGGCACGGTACGACACCAAAGCTTGACC ACCTTCATATCTTCGACTGCACGGCGTAAGTGATGTTCCAGTCCCAGCAG AGACGAAAATTCGATGATAAAGCATGGCTGGGGGCGTTTCTGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig18270:4407..4751+

>mRNA_H-paniculata_contig18270.4462.1 ID=mRNA_H-paniculata_contig18270.4462.1|Name=mRNA_H-paniculata_contig18270.4462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig18270:4407..4751+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCCGAAGTAAAATAATCACCGCCAACATGGGCCGCATGTATTGGTC
GGAGGCGACGCGGGCGGCTGTGTACTGCGTAAATCGCACCCCGAGGCGAC
CGCACAACGGGGGAATGCCGTATGAGAAATGGCACGGTACGACACCAAAG
CTTGACCACCTTCATATCTTCGACTGCACGGCGTAAATGACCCGAAGTAA
AATAATCACCGCCAACATGGGCCGCATGTATTGGTCGGAGGCGACGCGGG
CGGCTGTGTACTGCGTAAATCGCACCCCGAGGCGACCGCACAACGGGGGA
ATGCCGTATGAGAAATGGCACGGTACGACACCAAAGCTTGACCACCTTCA
TATCTTCGACTGCACGGCGTAA
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