mRNA_H-paniculata_contig18270.4462.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Match: A0A2M4CK12_ANODA (Putative pol polyprotein (Fragment) n=1 Tax=Anopheles darlingi TaxID=43151 RepID=A0A2M4CK12_ANODA) HSP 1 Score: 100 bits (249), Expect = 2.560e-22 Identity = 48/111 (43.24%), Postives = 67/111 (60.36%), Query Frame = 1
Query: 13 GIKQEFSAAFTPQQDGVAERSWRSVFKMTRSKIITANMGRMYWSEATRAAVYCVNRTPRRPHNGGMPYEKWHGTTPKLDHLHIFDCTA*VMFQSQQRRKFDDKAWLGAFLG 345
GIK +++A+++PQQ+GVAER RS+ +M R + A + + YW+EA AVY N +P +P N PYE WHG PK++HL IF C A +R+K A FLG
Sbjct: 123 GIKPQYTASYSPQQNGVAERKNRSLIEMVRCMLFDAQLEQKYWAEAMNTAVYLQNISPTKPRNN-TPYETWHGVKPKVNHLRIFGCDAWAHIPKAKRKKLGATAQKLTFLG 232
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Match: A0A3S3NIE3_9ACAR (Uncharacterized protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3NIE3_9ACAR) HSP 1 Score: 100 bits (248), Expect = 3.540e-22 Identity = 48/112 (42.86%), Postives = 65/112 (58.04%), Query Frame = 1
Query: 10 NGIKQEFSAAFTPQQDGVAERSWRSVFKMTRSKIITANMGRMYWSEATRAAVYCVNRTPRRPHNGGMPYEKWHGTTPKLDHLHIFDCTA*VMFQSQQRRKFDDKAWLGAFLG 345
NGI +++A +TPQQ+GVAER R++ +M RS + A M + +W EA A Y N P + NG PYE W P L H+ +F C A V ++RRK+D KA FLG
Sbjct: 341 NGIVHQYTAPYTPQQNGVAERKNRTLVEMARSMLFCAQMNKNFWGEAIVTATYIQNSCPNKALNGKTPYELWFEKRPSLKHMRVFGCEAFVHVPDEKRRKWDPKAIKCIFLG 452
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Match: UPI000A2AF52F (uncharacterized protein LOC107607928 n=1 Tax=Arachis ipaensis TaxID=130454 RepID=UPI000A2AF52F) HSP 1 Score: 100 bits (248), Expect = 3.580e-22 Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = 1
Query: 13 GIKQEFSAAFTPQQDGVAERSWRSVFKMTRSKIITANMGRMYWSEATRAAVYCVNRTPRRPHNGGMPYEKWHGTTPKLDHLHIFDCTA*VMFQSQQRRKFDDKAWLGAFLG 345
GI+++F+ A+TPQQ+GVAER R++ + R+ + TA + + +W+EA + A Y +NR+P P E W G P LHIF C VM+ SQ+R K D K+ FLG
Sbjct: 268 GIQRQFTVAYTPQQNGVAERMNRTLLERARAMLQTAGLAKFFWAEAVKTACYVINRSPSTAIGLKTPMEMWQGKPPNYSSLHIFGCPVYVMYNSQERTKLDPKSRKCIFLG 378
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Match: A0A4C1SWH4_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1SWH4_EUMVA) HSP 1 Score: 94.4 bits (233), Expect = 4.450e-22 Identity = 44/104 (42.31%), Postives = 69/104 (66.35%), Query Frame = 1
Query: 10 NGIKQEFSAAFTPQQDGVAERSWRSVFKMTRSKIITANMGRMYWSEATRAAVYCVNRTPRRPHNGGMPYEKWHGTTPKLDHLHIFDCTA*VMFQSQQRRKFDDK 321
+GI ++ + A+TPQQ+GVAER+ R++ +M+R+ ++ AN+G+ W+EA AVY NR+P + G P+E W+G PK+ HL +F A V Q++KFD K
Sbjct: 22 HGIVRQLTVAYTPQQNGVAERANRTLVEMSRAMLLHANLGKHLWAEAVSTAVYLRNRSPTKALLGKTPFEVWYGYKPKVGHLRVFGSYA-VALDKTQKQKFDAK 124
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Match: A0A0A9XZW0_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XZW0_LYGHE) HSP 1 Score: 99.0 bits (245), Expect = 7.940e-22 Identity = 49/115 (42.61%), Postives = 71/115 (61.74%), Query Frame = 1
Query: 1 LCGNGIKQEFSAAFTPQQDGVAERSWRSVFKMTRSKIITANMGRMYWSEATRAAVYCVNRTPRRPHNGGMPYEKWHGTTPKLDHLHIFDCTA*VMFQSQQRRKFDDKAWLGAFLG 345
L +GI++ FSA +TPQQ+G+AER RSV R ++ AN+ +W+EA A Y +NR+P R NG P+E W G P ++HL IF A + ++Q + KFD +A G F+G
Sbjct: 102 LIDHGIQRRFSAPYTPQQNGLAERKNRSVLDKARCLLLEANLPDSFWAEAIFCANYLINRSPSRSLNGKTPFELWVGHPPTVNHLQIFGSKAFFLNKNQNKSKFDCRANDGIFVG 216
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Match: UPI000E703791 (uncharacterized protein LOC113290509 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E703791) HSP 1 Score: 98.2 bits (243), Expect = 1.630e-21 Identity = 46/112 (41.07%), Postives = 68/112 (60.71%), Query Frame = 1
Query: 10 NGIKQEFSAAFTPQQDGVAERSWRSVFKMTRSKIITANMGRMYWSEATRAAVYCVNRTPRRPHNGGMPYEKWHGTTPKLDHLHIFDCTA*VMFQSQQRRKFDDKAWLGAFLG 345
+GIK++F+AAFTPQQ+GVAER R++ M RS + T+ + + +W E + +VY +NR+P + P E W G P + HL +F C A ++R+K DDK FLG
Sbjct: 438 DGIKRKFTAAFTPQQNGVAERKNRTILNMVRSVLYTSGVPKNFWPEVVQWSVYVLNRSPTQSVINMTPIEAWSGEKPCVSHLRVFGCIAYAHVPDEKRKKLDDKGVKCVFLG 549
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Match: A0A4Y8W7M7_9VIBR (Transposase (Fragment) n=2 Tax=Vibrio ouci TaxID=2499078 RepID=A0A4Y8W7M7_9VIBR) HSP 1 Score: 91.7 bits (226), Expect = 1.890e-21 Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 1
Query: 13 GIKQEFSAAFTPQQDGVAERSWRSVFKMTRSKIITANMGRMYWSEATRAAVYCVNRTPRRPHNGGMPYEKWHGTTPKLDHLHIFDCTA*VMFQSQQRRKFDDKAWLGAFLG 345
GIK++F+ A+TPQQ+GVAER R++ + TR+ + A +G+ +W+EA A Y +NR+P P E W G LHIF VM+ +Q+ K D K+ FLG
Sbjct: 8 GIKRQFTTAYTPQQNGVAERMNRTLLERTRAMLKAAGLGKSFWAEAVNTACYVINRSPSTAIELKTPMEMWTGKPADYSRLHIFGSPVYVMYNTQEVSKLDSKSRKCVFLG 118
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Match: A0A4Y2LAF7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2LAF7_ARAVE) HSP 1 Score: 94.7 bits (234), Expect = 9.970e-21 Identity = 45/111 (40.54%), Postives = 63/111 (56.76%), Query Frame = 1
Query: 13 GIKQEFSAAFTPQQDGVAERSWRSVFKMTRSKIITANMGRMYWSEATRAAVYCVNRTPRRPHNGGMPYEKWHGTTPKLDHLHIFDCTA*VMFQSQQRRKFDDKAWLGAFLG 345
GI + + ++PQQ+GV+ER R++ +M R + AN+ + +W+EA A Y NR P +P PY W P L H+ +F C A Q Q+RRK DDKA G FLG
Sbjct: 94 GIVHQLTVPYSPQQNGVSERKNRTLIEMARCLLSDANLSQRFWAEAAMTATYLQNRLPTKPKRK-TPYVLWANRKPDLSHIRVFGCKAYACIQKQKRRKLDDKAVEGIFLG 203
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Match: A0A2S2NXV8_SCHGA (Retrovirus-related Pol polyprotein n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2NXV8_SCHGA) HSP 1 Score: 95.9 bits (237), Expect = 1.080e-20 Identity = 44/111 (39.64%), Postives = 62/111 (55.86%), Query Frame = 1
Query: 13 GIKQEFSAAFTPQQDGVAERSWRSVFKMTRSKIITANMGRMYWSEATRAAVYCVNRTPRRPHNGGMPYEKWHGTTPKLDHLHIFDCTA*VMFQSQQRRKFDDKAWLGAFLG 345
GIK E S +TPQQ+G AERS R++ + R+ + + N+ + W+EA VY +NRT G PYE W TP ++HL IF ++RRK+D K G F+G
Sbjct: 273 GIKHETSVPYTPQQNGKAERSMRTIVEAARTMLYSKNLSKTLWAEAVNTVVYTINRTGNTGQEGKTPYELWFNKTPDINHLKIFGTEVYAHIPKEKRRKWDQKGRKGIFVG 383
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Match: Q9C7Y1_ARATH (Copia-type polyprotein, putative; 28768-32772 n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9C7Y1_ARATH) HSP 1 Score: 95.9 bits (237), Expect = 1.100e-20 Identity = 46/104 (44.23%), Postives = 66/104 (63.46%), Query Frame = 1
Query: 13 GIKQEFSAAFTPQQDGVAERSWRSVFKMTRSKIITANMGRMYWSEATRAAVYCVNRTPRRPHNGGMPYEKWHGTTPKLDHLHIFDCTA*VMFQSQQRRKFDDKA 324
GIK++ +AA+TPQQ+GVAER RSV MTR ++ ++ R +W EA + AVY +NR+P + N P EKW P ++HL IF A + Q+R K D+K+
Sbjct: 583 GIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQYAVYILNRSPSKALNDITPEEKWSSWKPSVEHLRIFGSLAYALVPYQKRIKLDEKS 686 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18270.4462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18270.4462.1 >prot_H-paniculata_contig18270.4462.1 ID=prot_H-paniculata_contig18270.4462.1|Name=mRNA_H-paniculata_contig18270.4462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp MTRSKIITANMGRMYWSEATRAAVYCVNRTPRRPHNGGMPYEKWHGTTPKback to top mRNA from alignment at H-paniculata_contig18270:4407..4751+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18270.4462.1 ID=mRNA_H-paniculata_contig18270.4462.1|Name=mRNA_H-paniculata_contig18270.4462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at H-paniculata_contig18270:4407..4751+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18270:4407..4751+ >mRNA_H-paniculata_contig18270.4462.1 ID=mRNA_H-paniculata_contig18270.4462.1|Name=mRNA_H-paniculata_contig18270.4462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig18270:4407..4751+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |