mRNA_H-paniculata_contig1827.4459.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1827.4459.1 vs. uniprot
Match: D7G2H6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H6_ECTSI) HSP 1 Score: 126 bits (317), Expect = 2.440e-26 Identity = 83/228 (36.40%), Postives = 115/228 (50.44%), Query Frame = 1
Query: 1147 FSRLRFQARGLRVNSVVAKGGCGRTVRSCLAVSCLQVRGVESVGDYYDGHVVKANAVSFAQVRVAGSPINLHIR-SVRGDGNSPKRR------AEGDCK-----------AIAQRG--------------------------------VTSEEIVVGKADMVWSGSMHLGLLRMSKRLVRTIDHLVGVPSSPPPLKFTRSIHLVKGYFRCAFARVLADSKL---PPSR 1671
+SRL+ + RG+R++ VV K GRT R+ +AVSC +V G ES+G+ Y H+V +SFAQVRVA P+ L + + GN + + A GD + A A RG V +E I++ + DM WSGS+H LLR+S+RLV TIDHLVG+P P++FTR + L Y RCA + V L PPS+
Sbjct: 449 WSRLKLELRGVRMDKVVEKDSLGRTARATMAVSCKEVSGTESIGEEYCEHIVNLVGLSFAQVRVANVPLVLGLAPDAKATGNDTQAKPGGRNGATGDTEEVDDDGSGQPTAAATRGGDGHVATAASAAPVGGEGAIPCSPPPPAARGAVKAENIIIDRTDMAWSGSVHCMLLRLSQRLVLTIDHLVGLPPPXXPVEFTRRVLLRGAYLRCALSEVTEGRPLRSPPPSQ 676
BLAST of mRNA_H-paniculata_contig1827.4459.1 vs. uniprot
Match: A0A6H5L9Y5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y5_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 1.450e-12 Identity = 55/138 (39.86%), Postives = 72/138 (52.17%), Query Frame = 1
Query: 1429 AQRGVTSEEIVVGKADMVWSGSMHLGLLRMSKRLVRTIDHLVGVPSSPPPLKFTRSIHLVKGYFRCAFARVLAD----SKLPPSRFHGYASGSSERTVPWFHDRLDVRLDNLRFVVTKKMPAM-----TPADSSGGHK 1815
A+ V +E I++ + DM WSGS+H LLR+S+RLV TIDHLVG P P P++FTR + L Y RCA + V S LP R S SS + LD+L F + PAM +P + GG K
Sbjct: 918 ARGAVKAEHIIIDRTDMAWSGSVHCMLLRLSQRLVSTIDHLVGFPPPPLPVEFTRRVLLRGAYLRCALSEVTEGRPLRSPLPSQRPLARTSRSSSSSFSSTSS-----LDDLSF----RQPAMEGGPRSPDNDHGGGK 1046 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1827.4459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1827.4459.1 >prot_H-paniculata_contig1827.4459.1 ID=prot_H-paniculata_contig1827.4459.1|Name=mRNA_H-paniculata_contig1827.4459.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=630bp SSAAHVGDRTQSSPPPSPATHNNGRSINRFRRYSHTTGALPESEAQPQRSback to top mRNA from alignment at H-paniculata_contig1827:4984..11357- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1827.4459.1 ID=mRNA_H-paniculata_contig1827.4459.1|Name=mRNA_H-paniculata_contig1827.4459.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6374bp|location=Sequence derived from alignment at H-paniculata_contig1827:4984..11357- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1827:4984..11357- >mRNA_H-paniculata_contig1827.4459.1 ID=mRNA_H-paniculata_contig1827.4459.1|Name=mRNA_H-paniculata_contig1827.4459.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3780bp|location=Sequence derived from alignment at H-paniculata_contig1827:4984..11357- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |