mRNA_H-paniculata_contig1827.4457.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1827.4457.1
Unique NamemRNA_H-paniculata_contig1827.4457.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1827.4457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1827contigH-paniculata_contig1827:2349..2950 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size205
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929419.3157322-CDS-H-paniculata_contig1827:2350..24131622929419.3157322-CDS-H-paniculata_contig1827:2350..2413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1827 2351..2413 -
1691480853.377865-CDS-H-paniculata_contig1827:2350..24131691480853.377865-CDS-H-paniculata_contig1827:2350..2413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1827 2351..2413 -
1622929419.3348253-CDS-H-paniculata_contig1827:2812..29501622929419.3348253-CDS-H-paniculata_contig1827:2812..2950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1827 2813..2950 -
1691480853.3915584-CDS-H-paniculata_contig1827:2812..29501691480853.3915584-CDS-H-paniculata_contig1827:2812..2950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1827 2813..2950 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1827.4457.1prot_H-paniculata_contig1827.4457.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1827 2351..2950 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1827.4457.1

>prot_H-paniculata_contig1827.4457.1 ID=prot_H-paniculata_contig1827.4457.1|Name=mRNA_H-paniculata_contig1827.4457.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
RSSADSRGARFQERPVCPVMAGNVQRPKGLSAGASIVLAFGEITLKVSRQ
EPQNTLLDAVRLLDEHP
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mRNA from alignment at H-paniculata_contig1827:2349..2950-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1827.4457.1 ID=mRNA_H-paniculata_contig1827.4457.1|Name=mRNA_H-paniculata_contig1827.4457.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=602bp|location=Sequence derived from alignment at H-paniculata_contig1827:2349..2950- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTTCAAGTGCTGATTCAAGGGGGGCAAGGTTTCAAGAGAGACCCGTGTG
TCCGGTCATGGCGGGTAACGTGCAGCGGCCCAAGGGGTTATCGGCGGGCG
CCTCCATTGTGCTGGCCTTTGGAGAGATTACGTTGAAGGTGAAAGGAGTA
GCGAGGGAGGATGTTAAGTTTTGTGGTAGTTGAACTTGCTGGTACGCATG
GCGTGGTTTTTGTGTCGAACTTGGTAGGTCGCTAGGCTGTGGTGAAACGT
GTATGTCACTGCTGGCATGTGATCTGTTGTATTTTGTTTTATGCGCACCC
AGATTCCTGCTAAATCCATAACATACAGAAAGTCTTGAGCTAGTTCGCGA
AATACGTTGCTATGGCGAATATGCACTGATCTGCATGCGCCATACGGTGT
GTCTGCTGTCCAAACTTCGAATGAGCTCAGTCGAGAACAAATATCCGTCT
TGTGTGAGATCTTCACAAAAGAAATTACGAAGAATCCTCTGGCACAGCTT
GTTCACCCCGCCTCCTCCCACTGTTGACATTCTCCAGGTGTCTCGACAGG
AACCCCAAAATACCCTATTGGACGCCGTCAGGCTGTTGGACGAACACCCA
GG
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Coding sequence (CDS) from alignment at H-paniculata_contig1827:2349..2950-

>mRNA_H-paniculata_contig1827.4457.1 ID=mRNA_H-paniculata_contig1827.4457.1|Name=mRNA_H-paniculata_contig1827.4457.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig1827:2349..2950- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTTCAAGTGCTGATTCAAGGGGGGCAAGGTTTCAAGAGAGACCCGTGTG
TCCGGTCATGGCGGGTAACGTGCAGCGGCCCAAGGGGTTATCGGCGGGCG
CCTCCATTGTGCTGGCCTTTGGAGAGATTACGTTGAAGCGTTCAAGTGCT
GATTCAAGGGGGGCAAGGTTTCAAGAGAGACCCGTGTGTCCGGTCATGGC
GGGTAACGTGCAGCGGCCCAAGGGGTTATCGGCGGGCGCCTCCATTGTGC
TGGCCTTTGGAGAGATTACGTTGAAGGTGTCTCGACAGGAACCCCAAAAT
ACCCTATTGGACGCCGTCAGGCTGTTGGACGAACACCCAGTGTCTCGACA
GGAACCCCAAAATACCCTATTGGACGCCGTCAGGCTGTTGGACGAACACC
CA
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