mRNA_H-paniculata_contig1826.4455.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1826.4455.1
Unique NamemRNA_H-paniculata_contig1826.4455.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1826.4455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1826contigH-paniculata_contig1826:12154..12528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929418.7371213-CDS-H-paniculata_contig1826:12153..125281622929418.7371213-CDS-H-paniculata_contig1826:12153..12528Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1826 12154..12528 +
1691480853.155859-CDS-H-paniculata_contig1826:12153..125281691480853.155859-CDS-H-paniculata_contig1826:12153..12528Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1826 12154..12528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1826.4455.1prot_H-paniculata_contig1826.4455.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1826 12154..12528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1826.4455.1

>prot_H-paniculata_contig1826.4455.1 ID=prot_H-paniculata_contig1826.4455.1|Name=mRNA_H-paniculata_contig1826.4455.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
RKTTGGQSNSKYKRKHRLIRHDTRDRGKALVKGDSTTPALHVSGERASAL
DDASLNRSLTVLLTELGLYQSVQRTAVEHHLPANLKDGVEVEKMQRAMTF
KGLPPRMDQPHFSPTFVELGGPGKG
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mRNA from alignment at H-paniculata_contig1826:12154..12528+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1826.4455.1 ID=mRNA_H-paniculata_contig1826.4455.1|Name=mRNA_H-paniculata_contig1826.4455.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=375bp|location=Sequence derived from alignment at H-paniculata_contig1826:12154..12528+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAAAACGACCGGCGGTCAGTCGAACAGCAAGTACAAAAGGAAACATCG
TCTCATTCGCCACGACACACGAGACCGTGGTAAAGCGCTTGTGAAAGGGG
ACAGCACCACGCCGGCATTACACGTCAGTGGGGAAAGAGCCAGCGCTCTA
GACGACGCTAGCTTGAACCGGTCGCTTACGGTGCTCTTAACGGAGTTGGG
GCTGTATCAATCCGTCCAACGCACTGCTGTTGAGCATCACTTGCCAGCGA
ACTTGAAAGACGGGGTTGAGGTGGAGAAGATGCAGCGGGCGATGACGTTT
AAGGGTCTTCCGCCTCGAATGGATCAGCCACACTTTAGTCCGACATTCGT
GGAACTGGGGGGACCAGGAAAGGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1826:12154..12528+

>mRNA_H-paniculata_contig1826.4455.1 ID=mRNA_H-paniculata_contig1826.4455.1|Name=mRNA_H-paniculata_contig1826.4455.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig1826:12154..12528+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAAAACGACCGGCGGTCAGTCGAACAGCAAGTACAAAAGGAAACATCG
TCTCATTCGCCACGACACACGAGACCGTGGTAAAGCGCTTGTGAAAGGGG
ACAGCACCACGCCGGCATTACACGTCAGTGGGGAAAGAGCCAGCGCTCTA
GACGACGCTAGCTTGAACCGGTCGCTTACGGTGCTCTTAACGGAGTTGGG
GCTGTATCAATCCGTCCAACGCACTGCTGTTGAGCATCACTTGCCAGCGA
ACTTGAAAGACGGGGTTGAGGTGGAGAAGATGCAGCGGGCGATGACGTTT
AAGGGTCTTCCGCCTCGAATGGATCAGCCACACTTTAGTCCGACATTCGT
GGAACTGGGGGGACCAGGAAAGGGCAGAAAAACGACCGGCGGTCAGTCGA
ACAGCAAGTACAAAAGGAAACATCGTCTCATTCGCCACGACACACGAGAC
CGTGGTAAAGCGCTTGTGAAAGGGGACAGCACCACGCCGGCATTACACGT
CAGTGGGGAAAGAGCCAGCGCTCTAGACGACGCTAGCTTGAACCGGTCGC
TTACGGTGCTCTTAACGGAGTTGGGGCTGTATCAATCCGTCCAACGCACT
GCTGTTGAGCATCACTTGCCAGCGAACTTGAAAGACGGGGTTGAGGTGGA
GAAGATGCAGCGGGCGATGACGTTTAAGGGTCTTCCGCCTCGAATGGATC
AGCCACACTTTAGTCCGACATTCGTGGAACTGGGGGGACCAGGAAAGGGC
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