mRNA_H-paniculata_contig18256.4452.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig18256.4452.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE) HSP 1 Score: 255 bits (652), Expect = 9.740e-75 Identity = 160/470 (34.04%), Postives = 244/470 (51.91%), Query Frame = 1
Query: 1 PPNHTVIGMRWVFEVKADGIFKARLVVQGWSQNHGIDCGSSFAPVCRLESQRLLLALATAKDWTIYARDVQVAFLNA-------------------------------------------------KLRSMGSTPTISDPCVYSKGSNHTYIMLSLFVDDILVTGPTDKLLMDVCYQLMNKFTTTDFGEVSLILGMEVVRNK---TLQLSQDKYVPSILDRFNMSSVNPTKRPDIKTDPSAASNGDSLLDAAATKEYHAI--SLFFLTQCTRFDICFSVIQAARFMSAPTQQHLVAVKRVLRFLRGYPDISITYS*SKLELVGYSNASYCT-----RSTTGTILFSANGLVHFSSRLQKVTATSTNETELIALAACTKQGVYLLGICRELGLQ-INSCQVHSDNRGALHLAANSNYSSRSKHGAIRFSALRDWTRSKQLVIDHLSSSDQLADILTRHCERLTFARLCREI 1230
P ++G ++VF+ DG FKARLVV G Q G D G S+APVCR+ S R+ A+ +W IY DV AFLNA L +G T SDPCVY S + ++L+++VDDIL+TG +L+ +L ++F TD GEV ILG++V R+ TL +SQ+ YV ++L+RF M NP P + S D +L K Y ++ S+ +L QCTRFD+ ++ +Q ++ S P Q ++ A K VLR+LRG P + I Y + L ++++S+ RSTTG + F A GL+ + ++ Q +TA ST E E+ AL+ ++ VY+ EL + S ++SD+ GAL +A N+ +S R+KH A+R+ +R+ Q+ + H S QLADI T++ + FA + ++I
Sbjct: 227 PEGEKILGTKFVFKKTLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQI 696
BLAST of mRNA_H-paniculata_contig18256.4452.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE) HSP 1 Score: 249 bits (637), Expect = 1.460e-74 Identity = 158/470 (33.62%), Postives = 244/470 (51.91%), Query Frame = 1
Query: 1 PPNHTVIGMRWVFEVKADGIFKARLVVQGWSQNHGIDCGSSFAPVCRLESQRLLLALATAKDWTIYARDVQVAFLNA-------------------------------KLRSMGSTPTI------------------SDPCVYSKGSNHTYIMLSLFVDDILVTGPTDKLLMDVCYQLMNKFTTTDFGEVSLILGMEVVRNK---TLQLSQDKYVPSILDRFNMSSVNPTKRPDIKTDPSAASNGDSLLDAAATKEYHAI--SLFFLTQCTRFDICFSVIQAARFMSAPTQQHLVAVKRVLRFLRGYPDISITYS*SKLELVGYSNASYCT-----RSTTGTILFSANGLVHFSSRLQKVTATSTNETELIALAACTKQGVYLLGICRELGLQ-INSCQVHSDNRGALHLAANSNYSSRSKHGAIRFSALRDWTRSKQLVIDHLSSSDQLADILTRHCERLTFARLCREI 1230
P ++G ++VF+ K DG FKARLVV G Q G D G S+APVCR+ S R+ A+ +W IY DV AFLNA L + +P + SDPCVY S + ++L+++VDDIL+TG +L+ +L ++F TD GEV ILG++V R+ TL +SQ+ YV + L+RF M NP + S D +L K Y ++ S+ +L QCT+FD+ ++ +Q ++ S P Q ++ A K VLR+LRG P + I Y + L ++++S+ RSTTG + F A GL+ + ++ Q +TA ST E E+ AL+ ++ VY+ EL + S ++SD+ GAL +A N+ +S R+KH A+R+ +R+ Q+ + H S QLADI T++ + FA + ++I
Sbjct: 19 PKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQI 488
BLAST of mRNA_H-paniculata_contig18256.4452.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 254 bits (649), Expect = 4.940e-74 Identity = 161/470 (34.26%), Postives = 241/470 (51.28%), Query Frame = 1
Query: 1 PPNHTVIGMRWVFEVKADGIFKARLVVQGWSQNHGIDCGSSFAPVCRLESQRLLLALATAKDWTIYARDVQVAFLNA-------------------------------KLRSMGSTPTI------------------SDPCVYSKGSNHTYIMLSLFVDDILVTGPTDKLLMDVCYQLMNKFTTTDFGEVSLILGMEVVRNK---TLQLSQDKYVPSILDRFNMSSVNPTKRPDIKTDPSAASNGDSLLDAAATKEYHAI--SLFFLTQCTRFDICFSVIQAARFMSAPTQQHLVAVKRVLRFLRGYPDISITYS*SKLELVGYSNASYCT-----RSTTGTILFSANGLVHFSSRLQKVTATSTNETELIALAACTKQGVYLLGICRELGLQ-INSCQVHSDNRGALHLAANSNYSSRSKHGAIRFSALRDWTRSKQLVIDHLSSSDQLADILTRHCERLTFARLCREI 1230
P + + R+VF++KAD FKARLV G Q G G ++APV RL S R+L A+A W +Y DV AFLNA L + +P++ SDPCVY S +L+++VDDIL+TG +++ +LM+ F TD GEV ++G+EV R+ TL +SQ Y IL R+ M NP P + S D LL + + AI SL +L QCTR+D+ ++V Q R + P Q H+ A K +LR+LRG PD+ I Y K L ++++S+ RSTTG + F GL+ + ++ Q + A +T E EL AL+ ++ VY+ E+G + S ++SD+ GAL +A+N+ +SSR+KH A+RF LR+ T+ ++ + H S+ LADI T+H + FA + + I
Sbjct: 260 PKDEDIFDTRFVFKIKADSRFKARLVAGGHRQRAGRHFGRNYAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLI 729
BLAST of mRNA_H-paniculata_contig18256.4452.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE) HSP 1 Score: 255 bits (652), Expect = 1.340e-73 Identity = 159/470 (33.83%), Postives = 245/470 (52.13%), Query Frame = 1
Query: 1 PPNHTVIGMRWVFEVKADGIFKARLVVQGWSQNHGIDCGSSFAPVCRLESQRLLLALATAKDWTIYARDVQVAFLNA-------------------------------KLRSMGSTPTI------------------SDPCVYSKGSNHTYIMLSLFVDDILVTGPTDKLLMDVCYQLMNKFTTTDFGEVSLILGMEVVRNK---TLQLSQDKYVPSILDRFNMSSVNPTKRPDIKTDPSAASNGDSLLDAAATKEYHAI--SLFFLTQCTRFDICFSVIQAARFMSAPTQQHLVAVKRVLRFLRGYPDISITYS*SKLELVGYSNASYCT-----RSTTGTILFSANGLVHFSSRLQKVTATSTNETELIALAACTKQGVYLLGICRELGLQ-INSCQVHSDNRGALHLAANSNYSSRSKHGAIRFSALRDWTRSKQLVIDHLSSSDQLADILTRHCERLTFARLCREI 1230
P ++G ++VF+ K DG FKARLVV G Q G D G S+APVCR+ S R+ A+ +W IY DV AFLNA L + +P + SDPCVY S + ++L+++VDDIL+TG +L+ +L ++F TD GEV ILG++V R+ TL +SQ+ YV ++L+RF M NP P + S D +L K Y ++ S+ +L QCTRFD+ ++ +Q ++ S P Q ++ A K VLR+LRG P + I Y + L ++++S+ RSTTG + F A GL+ + ++ Q +TA ST E E+ AL+ ++ VY+ EL + S ++SD+ GAL +A N+ +S R+KH +R+ +R+ Q+ + H S QLADI T++ + FA + ++I
Sbjct: 383 PKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVTLRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQI 852
BLAST of mRNA_H-paniculata_contig18256.4452.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 254 bits (650), Expect = 1.570e-72 Identity = 163/439 (37.13%), Postives = 235/439 (53.53%), Query Frame = 1
Query: 1 PPNHTVIGMRWVFEVKADGIFKARLVVQGWSQNHGIDCGSSFAPVCRLESQRLLLALATAKDWTIYARDV---QVAFLNAKLRSMGSTP-----TI-------------SDPCVYSKGSNHTYIMLSLFVDDILVTGPTDKLLMDVCYQLMNKFTTTDFGEVSLILGMEVVRNK---TLQLSQDKYVPSILDRFNMSSVNPTKRPDIKTDPSAASNGDSLLDAAATKEYHAI--SLFFLTQCTRFDICFSVIQAARFMSAPTQQHLVAVKRVLRFLRGYPDISITYS*SKLELVGYSNASYCT-----RSTTGTILFSANGLVHFSSRLQKVTATSTNETELIALAACTKQGVYLLGICRELGLQINSCQ--VHSDNRGALHLAANSNYSSRSKHGAIRFSALRDWTRSKQLVIDHLSSSDQLADILTRHCERLTFARL 1218
PP I +WVF+ KADG FK R+V QGW+Q G+DCGS++APVCR++S R++ + + D V LN L + +P TI SDPCVY N I L+L+VDD+L+ G + V +L +F TD GE SL+L ME+ R++ TL +SQ+ Y SIL+RF MS PT P ++ S D+LLD T++Y I SL ++ Q R+DI ++ Q AR M+ P++ H+VA K LR+L G D SITY +L +S++++ +ST+ + AN + F S LQ +TA ST E EL+A A K+ V+ + ELG Q V+ DN LH N ++SSR+KH A+RF +R+ ++ I ++ + D LADI T+H F L
Sbjct: 550 PPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVDFNLIFDQMDDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHL 988
BLAST of mRNA_H-paniculata_contig18256.4452.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 251 bits (642), Expect = 1.400e-70 Identity = 164/466 (35.19%), Postives = 238/466 (51.07%), Query Frame = 1
Query: 1 PPNHTVIGMRWVFEVKADGIFKARLVVQGWSQNHGIDCGSSFAPVCRLESQRLLLALATAKDWTIYARDVQVAFL------------------------------NAKLRSMGSTP-----TI-------------SDPCVYSKGSNHTYIMLSLFVDDILVTGPTDKLLMDVCYQLMNKFTTTDFGEVSLILGMEVVRNK---TLQLSQDKYVPSILDRFNMSSVNPTKRPDIKTDPSAASNGDSLLDAAATKEYHAI--SLFFLTQCTRFDICFSVIQAARFMSAPTQQHLVAVKRVLRFLRGYPDISITYS*SKLELVGYSNASYCT-----RSTTGTILFSANGLVHFSSRLQKVTATSTNETELIALAACTKQGVYLLGICRELGLQINSCQ--VHSDNRGALHLAANSNYSSRSKHGAIRFSALRDWTRSKQLVIDHLSSSDQLADILTRHCERLTFARL 1218
PP I +WVF+ KADG FK R+V QGW+Q G+DCGS++APVCR++S R++ + + DV AFL N L + +P TI SDPCVY N I L+L+VDD+L+ G + V +L +F TD GE SL+LGME+ R++ TL +SQ+ Y SIL+RF +S PT P ++ S D+LLD T++Y I SL ++ Q R+DI ++ Q AR M+ P++ H+VA K LR+L G D SITY +L +S++++ +ST+ + AN + F S LQ +TA ST E EL+A A + V+ + ELG Q V+ DN LH N ++SSR+KH A+RF +R+ ++ I ++ + D LADI T+H + F L
Sbjct: 1192 PPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHL 1657
BLAST of mRNA_H-paniculata_contig18256.4452.1 vs. uniprot
Match: A0A6H5KDK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK0_9PHAE) HSP 1 Score: 232 bits (592), Expect = 1.500e-67 Identity = 149/438 (34.02%), Postives = 228/438 (52.05%), Query Frame = 1
Query: 1 PPNHTVIGMRWVFEVKADGIFKARLVVQGWSQNHGIDCGSSFAPVCRLESQRLLLALATAKDWTIYARDVQVAFLNAKL---------------RSMGSTPTI-----------------SDPCVYSKGSNHTYIMLSLFVDDILVTGPTDKLLMDVCYQLMNKFTTTDFGEVSLILGMEVVRNK---TLQLSQDKYVPSILDRFNMSSVNPTKRPDIKTDPSAASNGDSLLDAAATKEYHAI--SLFFLTQCTRFDICFSVIQAARFMSAPTQQHLVAVKRVLRFLRGYPDISITYS*SKLELVGYSNASYCT-----RSTTGTILFSANGLVHFSSRLQKVTATSTNETELIALAACTKQGVYLLGICRELGLQ-INSCQVHSDNRGALHLAANSNYSSRSKHGAIRFSALRDWTRSKQLVIDHLSSSDQLADILT 1185
P ++G ++VF+ DG FKARLVV G+ Q G D G S+APVCR+ R+ A+ +W IY DV AFLNA S P + SDPCVY S + ++L+++VDDIL+TG +L+ +L ++F TD GEV ILG++V R+ TL +SQ+ YV ++L+RF M NP D +L K Y ++ S+ L QCTRFD+ ++ +Q ++ S P Q ++ A K +R+LRG P + I Y + L ++++S+ RSTTG + F A GL+ + ++ Q +TA ST E E+ AL+ ++ VY+ EL + S ++SD+ GAL +A N+ +S R+K A+R+ +R+ Q+ + H S QLAD +T
Sbjct: 19 PKGEKILGTKFVFKKDLDGRFKARLVVGGYRQEPGQDYGRSYAPVCRIGGIRMTCAIGCHHNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANP----------------DQILGPTDKKIYQSMTGSILNLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHDVRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNATHSQRTKLVALRYFFIRELVLLGQITLHHRPSEHQLADXMT 440
BLAST of mRNA_H-paniculata_contig18256.4452.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE) HSP 1 Score: 232 bits (592), Expect = 4.770e-65 Identity = 159/470 (33.83%), Postives = 233/470 (49.57%), Query Frame = 1
Query: 1 PPNHTVIGMRWVFEVKADGIFKARLVVQGWSQNHGIDCGSSFAPVCRLESQRLLLALATAKDWTIYARDVQVAFLNAKL----------------------------RSM---------------------GSTPTISDPCVYSKGSNHTYIMLSLFVDDILVTGPTDKLLMDVCYQLMNKFTTTDFGEVSLILGMEVVR---NKTLQLSQDKYVPSILDRFNMSSVNPTKRPDIKTDPSAASNGDSLLDAAATKEYHAI--SLFFLTQCTRFDICFSVIQAARFMSAPTQQHLVAVKRVLRFLRGYPDISITYS*SKLELVGYSNASYCT-----RSTTGTILFSANGLVHFSSRLQKVTATSTNETELIALAACTKQGVYLLGICRELGLQ-INSCQVHSDNRGALHLAANSNYSSRSKHGAIRFSALRDWTRSKQLVIDHLSSSDQLADILTRHCERLTFARLCREI 1230
P + V+G R+VF+ KAD FK RLVVQG Q GID G +A VCR+ S R+ A+A + W ++ DV VAFL + RS+ G PT SDPCVY GS T ++L+L+V+DIL++G L+ D+ +L ++F TD GEV LILGM+V R N TL +SQ YV SIL+ M + NP D LL AA +K Y +I SL +L QC R+D ++V Q R S P + H A K LR++RG PD+ I + + + ++++S+ +STTG LQ E+EL A++ K+ YL + L + + ++SD+ G L LAAN+ +SSR+KH A+RF L++ + + + + H+ + LADI T+H +R F + +I
Sbjct: 421 PKHEKVLGTRFVFKQKADERFKVRLVVQGHVQESGIDDGRRYARVCRIGSVRIFFAIACERGWPVWQMDVAVAFLQPTIDKDVWVKPAPGQDAKDPATGGIMVYKLERSLYGLAQSPVLWYDTIDEVLVVIGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISGKDPDLVADLKKELQDRFEITDIGEVRLILGMKVTRSYENGTLVVSQKGYVKSILESLGMENCNPP--------------ADELLGAAESKLYQSITGSLLYLAQCKRYDQSYAVNQLTRACSKPARAHTTAAKHALRYIRGTPDLLIIFKRGRFRVAAFADSSFGAIPDNRKSTTG---------------LQV-------ESELQAISYGAKEAAYLSSLLMALKFENLKPISIYSDSSGTLSLAANTMFSSRTKHIALRFFVLQESIKPRHIAVHHVPTQAMLADIATKHLDRNKFNSIIHQI 854
BLAST of mRNA_H-paniculata_contig18256.4452.1 vs. uniprot
Match: A0A2N9FUY1_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FUY1_FAGSY) HSP 1 Score: 217 bits (553), Expect = 1.570e-61 Identity = 146/438 (33.33%), Postives = 228/438 (52.05%), Query Frame = 1
Query: 1 PPNHTVIGMRWVFEVK--ADGI---FKARLVVQGWSQNHGIDCGSSFAPVCRLESQRLLLALATAKDWTIYARDVQVAFLNAKL------------RSMGSTPTI--SDPCVYSKGSNHTYIMLSLFVDDILVTGPTDKLLMDVCYQLMNKFTTTDFGEVSLILGMEVVRN---KTLQLSQDKYVPSILDRFNMSSVNPTKRPDIK----TDPSAASNGDSLLDAAATKEYHAI-SLFFLTQCTRFDICFSVIQAARFMSAPTQQHLVAVKRVLRFLRGYPDISITYS*SKLELVGYSNASYCT-----RSTTGTILFSANGLVHFSSRLQKVTATSTNETELIALAACTKQGVYLLGICRELGLQINS---CQVHSDNRGALHLAANSNYSSRSKHGAIRFSALRDWTRSKQLVIDHLSSSDQLADILTRHCERLTF 1209
PP H IG +WV +VK ADG +KARLV +G++Q GID +F+PV R S RL+L++ +D ++ DV+ AFLN +L + G + D C+Y K S + ++LSL+VDDIL+ G ++ L + F D GE + +LG+++ R+ K L LSQ Y+ IL+RF+M + P P K + N + + AI SL + CTR DICF+V +R+ S P H AVKR+LR+LRG D ++ Y L L GYS+A + + +ST+G G V + S+ Q A ST E+E +A +A ++ V+L + LG+ ++ ++SD+ AL A + Y ++KH +R+ +RD ++++ H+S+ +AD LT+ R F
Sbjct: 110 PPGHKTIGNKWVLKVKRKADGSIDRYKARLVAKGYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKTAFLNGELDEEIYMAQPAGFEAKGHERKMIEEDHCMYLKRSKRSILILSLYVDDILLVGNDMDSIVTTKKWLSSTFEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILERFHMHNSKPIDTPMEKGCTLSLDQCPKNDEEKNQMSKVPYASAIRSLMYAMLCTRPDICFAVGMVSRYQSNPGPAHWRAVKRILRYLRGTSDHALCYHGGDLRLTGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQEAVWLRRFLQRLGVTAHAEDAVLLYSDSTSALAYAKDPKYHGKAKHIELRYHYIRDMVSQGEVILQHISTGSMVADPLTKPIARDLF 547
BLAST of mRNA_H-paniculata_contig18256.4452.1 vs. uniprot
Match: A0A6H5JDU8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU8_9PHAE) HSP 1 Score: 214 bits (545), Expect = 1.950e-60 Identity = 144/437 (32.95%), Postives = 215/437 (49.20%), Query Frame = 1
Query: 1 PPNHTVIGMRWVFEVKADGIFKARLVVQGWSQNHGIDCGSSFAPVCRLESQRLLLALATAKDWTIYARDVQVAFLNA-------------------------------------------------KLRSMGSTPTISDPCVYSKGSNHTYIMLSLFVDDILVTGPTDKLLMDVCYQLMNKFTTTDFGEVSLILGMEVVRNK---TLQLSQDKYVPSILDRFNMSSVNPTKRPDIKTDPSAASNGDSLLDAAATKEYHAI--SLFFLTQCTRFDICFSVIQAARFMSAPTQQHLVAVKRVLRFLRGYPDISITYS*SKLELVGYSNASYCT-----RSTTGTILFSANGLVHFSSRLQKVTATSTNETELIALAACTKQGVYLLGICRELGLQ-INSCQVHSDNRGALHLAANSNYSSRSKHGAIRFSALRDWTRSK 1131
P ++G ++VF+ K DG FKA LVV G Q G D GSS+APVCR+ S R+ + +W IY DV VAFLNA L+ G T DPCVY S + ++L+++VDDIL+TG D+ L+D +L ++F TD GEV ILG++V R+ TL +SQ+ YV ++L+RF M NP + S D +L K Y ++ S+ +L QCTRFD+ ++ +Q ++ S P Q +L A K VLR+LRG P + I Y + L +++S+ RSTTG + F A GL+ + ++ Q +TA ST E E+ AL+ ++ +Y+ E + ++SD+ GAL +A N F R W+R++
Sbjct: 120 PKGEEILGTKFVFKKKLDGRFKAHLVVGGHRQEPGQDYGSSYAPVCRIGSIRMTCTIGCHNNWPIYQLDVVVAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLNESLKVFGWKRTQYDPCVYMYTSGNIIVILTVYVDDILITGG-DQQLVDQKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEYYVNTLLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTRSILYLAQCTRFDLSYAALQLSKACSNPAQVNLTAAKHVLRYLRGNPVLPIVYKRGQFWLAASTDSSFGANLDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSFSAREAIYISNFMTEFNFKTFGWVPINSDSTGALTVAGN---------XIFLFQVSRGWSRTE 546 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18256.4452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18256.4452.1 >prot_H-paniculata_contig18256.4452.1 ID=prot_H-paniculata_contig18256.4452.1|Name=mRNA_H-paniculata_contig18256.4452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=254bp MRWVFEVKADGIFKARLVVQGWSQNHGIDCGSSFAPVCRLESQRLLLALAback to top mRNA from alignment at H-paniculata_contig18256:3817..5193- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18256.4452.1 ID=mRNA_H-paniculata_contig18256.4452.1|Name=mRNA_H-paniculata_contig18256.4452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1377bp|location=Sequence derived from alignment at H-paniculata_contig18256:3817..5193- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18256:3817..5193- >mRNA_H-paniculata_contig18256.4452.1 ID=mRNA_H-paniculata_contig18256.4452.1|Name=mRNA_H-paniculata_contig18256.4452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1524bp|location=Sequence derived from alignment at H-paniculata_contig18256:3817..5193- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |