mRNA_H-paniculata_contig18251.4449.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18251.4449.1
Unique NamemRNA_H-paniculata_contig18251.4449.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18251.4449.1 vs. uniprot
Match: D8LQL4_ECTSI (Carbamoyl-phosphate synthase (Glutamine-hydrolyzing) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQL4_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 2.970e-45
Identity = 83/86 (96.51%), Postives = 86/86 (100.00%), Query Frame = 1
Query:   16 QVNARLSRSSALASKATGYPLAFVAAKLGMGITLPEIENAITKRTMACFEPSLDYCVTKVPRWDLSKFEGVSSNIGSAMSSVGEVM 273
            +VNARLSRSSALASKATGYPLAFVAAKLGMGITLP+IENAITKRTMACFEPSLDYCVTK+PRWDLSKFEGVSSNIGSAMSSVGEVM
Sbjct:  691 EVNARLSRSSALASKATGYPLAFVAAKLGMGITLPDIENAITKRTMACFEPSLDYCVTKIPRWDLSKFEGVSSNIGSAMSSVGEVM 776          
BLAST of mRNA_H-paniculata_contig18251.4449.1 vs. uniprot
Match: A0A835YNS3_9STRA (Carbamoyl-phosphate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNS3_9STRA)

HSP 1 Score: 153 bits (387), Expect = 2.420e-41
Identity = 78/86 (90.70%), Postives = 82/86 (95.35%), Query Frame = 1
Query:   16 QVNARLSRSSALASKATGYPLAFVAAKLGMGITLPEIENAITKRTMACFEPSLDYCVTKVPRWDLSKFEGVSSNIGSAMSSVGEVM 273
            +VNARLSRSSALASKATGYPLAFVAAKL +GITLPEIENAIT+RTMACFEPSLDYCVTKVPRWDLSKFE VS+ IGSAM SVGEVM
Sbjct:  696 EVNARLSRSSALASKATGYPLAFVAAKLALGITLPEIENAITRRTMACFEPSLDYCVTKVPRWDLSKFENVSTEIGSAMLSVGEVM 781          
BLAST of mRNA_H-paniculata_contig18251.4449.1 vs. uniprot
Match: A0A7S2S454_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S454_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.680e-39
Identity = 70/86 (81.40%), Postives = 78/86 (90.70%), Query Frame = 1
Query:   16 QVNARLSRSSALASKATGYPLAFVAAKLGMGITLPEIENAITKRTMACFEPSLDYCVTKVPRWDLSKFEGVSSNIGSAMSSVGEVM 273
            +VNARLSRSSALASKATGYPLAFVAAKL +GI L E++NA+TK+T ACFEPSLDY VTK+PRWD+SKFEGVS  IGSAM SVGEVM
Sbjct:  111 EVNARLSRSSALASKATGYPLAFVAAKLSLGIPLNEVQNAVTKKTQACFEPSLDYIVTKIPRWDMSKFEGVSKEIGSAMKSVGEVM 196          
BLAST of mRNA_H-paniculata_contig18251.4449.1 vs. uniprot
Match: A0A7S1B966_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B966_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.210e-38
Identity = 73/86 (84.88%), Postives = 79/86 (91.86%), Query Frame = 1
Query:   16 QVNARLSRSSALASKATGYPLAFVAAKLGMGITLPEIENAITKRTMACFEPSLDYCVTKVPRWDLSKFEGVSSNIGSAMSSVGEVM 273
            +VNARLSRSSALASKATGYPLAFVAAKLG+GI L EIENA+TK+T ACFEPSLDY VTK+PRWD+SKFEGVS  IGSAM SVGEVM
Sbjct:  725 EVNARLSRSSALASKATGYPLAFVAAKLGLGIPLTEIENAVTKKTQACFEPSLDYIVTKIPRWDMSKFEGVSQEIGSAMKSVGEVM 810          
BLAST of mRNA_H-paniculata_contig18251.4449.1 vs. uniprot
Match: Q7T2G6_SCOMX (Carbamoyl phosphate synthetase III (Fragment) n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=Q7T2G6_SCOMX)

HSP 1 Score: 136 bits (342), Expect = 1.800e-38
Identity = 67/86 (77.91%), Postives = 78/86 (90.70%), Query Frame = 1
Query:   16 QVNARLSRSSALASKATGYPLAFVAAKLGMGITLPEIENAITKRTMACFEPSLDYCVTKVPRWDLSKFEGVSSNIGSAMSSVGEVM 273
            +VNARLSRSSALASKATGYPLAFVAAKL +GI LPEIE+A++++T ACFEPSLDY VTK+PRWDL +F+G+S  IGSAM SVGEVM
Sbjct:   54 EVNARLSRSSALASKATGYPLAFVAAKLALGIPLPEIESAVSEKTTACFEPSLDYIVTKIPRWDLDRFQGMSLEIGSAMKSVGEVM 139          
BLAST of mRNA_H-paniculata_contig18251.4449.1 vs. uniprot
Match: A0A6C0SHV9_9MUSC (Carbamoyl-phosphate synthase (Fragment) n=1 Tax=Panops baudini TaxID=1933010 RepID=A0A6C0SHV9_9MUSC)

HSP 1 Score: 132 bits (333), Expect = 2.110e-38
Identity = 65/86 (75.58%), Postives = 76/86 (88.37%), Query Frame = 1
Query:   16 QVNARLSRSSALASKATGYPLAFVAAKLGMGITLPEIENAITKRTMACFEPSLDYCVTKVPRWDLSKFEGVSSNIGSAMSSVGEVM 273
            +VNARLSRSSALASKATGYPLA+VAAKL +G+ LP+I+N++T  T ACFEPSLDYCV K+PRWDL+KF  VS NIGS+M SVGEVM
Sbjct:    1 EVNARLSRSSALASKATGYPLAYVAAKLALGLKLPDIKNSVTGVTTACFEPSLDYCVVKIPRWDLAKFVRVSKNIGSSMKSVGEVM 86          
BLAST of mRNA_H-paniculata_contig18251.4449.1 vs. uniprot
Match: A0A6V7LCY3_9HYME (CPSase_L_D3 domain-containing protein (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7LCY3_9HYME)

HSP 1 Score: 135 bits (339), Expect = 2.690e-38
Identity = 66/85 (77.65%), Postives = 76/85 (89.41%), Query Frame = 1
Query:   19 VNARLSRSSALASKATGYPLAFVAAKLGMGITLPEIENAITKRTMACFEPSLDYCVTKVPRWDLSKFEGVSSNIGSAMSSVGEVM 273
            VNARLSRSSALASKATGYPLA+VAAKL +GI LP+I N++T +T ACFEPSLDYCV K+PRWDLSKF+ VS+ IGS+M SVGEVM
Sbjct:    1 VNARLSRSSALASKATGYPLAYVAAKLSLGIPLPDINNSVTGKTTACFEPSLDYCVVKIPRWDLSKFQRVSTKIGSSMKSVGEVM 85          
BLAST of mRNA_H-paniculata_contig18251.4449.1 vs. uniprot
Match: A0A5P9VL87_9COLE (CAD trifunctional protein (Fragment) n=38 Tax=Polyphaga TaxID=41084 RepID=A0A5P9VL87_9COLE)

HSP 1 Score: 134 bits (336), Expect = 3.940e-38
Identity = 66/86 (76.74%), Postives = 75/86 (87.21%), Query Frame = 1
Query:   16 QVNARLSRSSALASKATGYPLAFVAAKLGMGITLPEIENAITKRTMACFEPSLDYCVTKVPRWDLSKFEGVSSNIGSAMSSVGEVM 273
            +VNARLSRSSALASKATGYPLA+VAAKL +GI+LP I N++T  T ACFEPSLDYCV K+PRWDLSKF  VS+ IGS+M SVGEVM
Sbjct:   71 EVNARLSRSSALASKATGYPLAYVAAKLALGISLPSINNSVTGNTTACFEPSLDYCVVKIPRWDLSKFTRVSTKIGSSMKSVGEVM 156          
BLAST of mRNA_H-paniculata_contig18251.4449.1 vs. uniprot
Match: A0A397A6I5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A6I5_9STRA)

HSP 1 Score: 144 bits (363), Expect = 4.080e-38
Identity = 71/86 (82.56%), Postives = 79/86 (91.86%), Query Frame = 1
Query:   16 QVNARLSRSSALASKATGYPLAFVAAKLGMGITLPEIENAITKRTMACFEPSLDYCVTKVPRWDLSKFEGVSSNIGSAMSSVGEVM 273
            +VNARLSRSSALASKATGYPLAFVAAKLG+GI LPE++N++TK T ACFEPSLDYCV KVPRWDLSKFE VS+ IGS+M SVGEVM
Sbjct:  128 EVNARLSRSSALASKATGYPLAFVAAKLGLGINLPELKNSVTKSTTACFEPSLDYCVAKVPRWDLSKFENVSTEIGSSMKSVGEVM 213          
BLAST of mRNA_H-paniculata_contig18251.4449.1 vs. uniprot
Match: A0A418EN22_9STRA (ATP-grasp domain-containing protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418EN22_9STRA)

HSP 1 Score: 144 bits (363), Expect = 4.150e-38
Identity = 71/86 (82.56%), Postives = 79/86 (91.86%), Query Frame = 1
Query:   16 QVNARLSRSSALASKATGYPLAFVAAKLGMGITLPEIENAITKRTMACFEPSLDYCVTKVPRWDLSKFEGVSSNIGSAMSSVGEVM 273
            +VNARLSRSSALASKATGYPLAFVAAKLG+GI LPE++N++TK T ACFEPSLDYCV KVPRWDLSKFE VS+ IGS+M SVGEVM
Sbjct:  702 EVNARLSRSSALASKATGYPLAFVAAKLGLGINLPELKNSVTKSTTACFEPSLDYCVAKVPRWDLSKFENVSTEIGSSMKSVGEVM 787          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18251.4449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQL4_ECTSI2.970e-4596.51Carbamoyl-phosphate synthase (Glutamine-hydrolyzin... [more]
A0A835YNS3_9STRA2.420e-4190.70Carbamoyl-phosphate synthase n=1 Tax=Tribonema min... [more]
A0A7S2S454_9STRA1.680e-3981.40Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S1B966_9STRA1.210e-3884.88Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
Q7T2G6_SCOMX1.800e-3877.91Carbamoyl phosphate synthetase III (Fragment) n=1 ... [more]
A0A6C0SHV9_9MUSC2.110e-3875.58Carbamoyl-phosphate synthase (Fragment) n=1 Tax=Pa... [more]
A0A6V7LCY3_9HYME2.690e-3877.65CPSase_L_D3 domain-containing protein (Fragment) n... [more]
A0A5P9VL87_9COLE3.940e-3876.74CAD trifunctional protein (Fragment) n=38 Tax=Poly... [more]
A0A397A6I5_9STRA4.080e-3882.56Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A418EN22_9STRA4.150e-3882.56ATP-grasp domain-containing protein (Fragment) n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18251contigH-paniculata_contig18251:3896..4474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.4
Seed ortholog evalue6.2e-39
Seed eggNOG ortholog2880.D8LQL4
Preferred nameCPS1
KEGG rclassRC00002,RC00010,RC00043,RC00064,RC00632,RC02750,RC02798,RC02804,RC02850,RC03314
KEGG koko:K01948,ko:K11540
KEGG ReactionR00149,R00256,R00575,R01395,R01397,R01993,R10948,R10949
KEGG Pathwayko00220,ko00240,ko00250,ko00910,ko01100,ko01120,ko01200,ko01230,map00220,map00240,map00250,map00910,map01100,map01120,map01200,map01230
KEGG ModuleM00029,M00051
Hectar predicted targeting categoryother localisation
GOsGO:0000050,GO:0000052,GO:0000096,GO:0000166,GO:0001101,GO:0001505,GO:0001889,GO:0002237,GO:0003008,GO:0003013,GO:0003018,GO:0003674,GO:0003824,GO:0004070,GO:0004087,GO:0004088,GO:0004151,GO:0004175,GO:0005488,GO:0005509,GO:0005524,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006082,GO:0006139,GO:0006206,GO:0006207,GO:0006508,GO:0006520,GO:0006525,GO:0006526,GO:0006541,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006725,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007275,GO:0007494,GO:0008015,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008289,GO:0008652,GO:0009056,GO:0009058,GO:0009064,GO:0009084,GO:0009112,GO:0009295,GO:0009410,GO:0009605,GO:0009607,GO:0009617,GO:0009636,GO:0009719,GO:0009725,GO:0009888,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010043,GO:0010243,GO:0014070,GO:0014074,GO:0014075,GO:0016020,GO:0016042,GO:0016053,GO:0016595,GO:0016597,GO:0016740,GO:0016741,GO:0016743,GO:0016787,GO:0016810,GO:0016812,GO:0016874,GO:0016879,GO:0016884,GO:0017076,GO:0017144,GO:0018130,GO:0019240,GO:0019433,GO:0019538,GO:0019627,GO:0019637,GO:0019752,GO:0019856,GO:0019866,GO:0030154,GO:0030554,GO:0030855,GO:0031090,GO:0031406,GO:0031667,GO:0031960,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032094,GO:0032496,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032870,GO:0032991,GO:0033762,GO:0033993,GO:0034201,GO:0034641,GO:0035150,GO:0035295,GO:0035296,GO:0035639,GO:0036094,GO:0042133,GO:0042221,GO:0042311,GO:0042493,GO:0042592,GO:0042594,GO:0042645,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043200,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044283,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046112,GO:0046209,GO:0046394,GO:0046461,GO:0046464,GO:0046483,GO:0046486,GO:0046503,GO:0046683,GO:0046872,GO:0048513,GO:0048545,GO:0048565,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048878,GO:0050667,GO:0050801,GO:0050880,GO:0050896,GO:0051384,GO:0051591,GO:0051704,GO:0051707,GO:0051716,GO:0055081,GO:0055086,GO:0055123,GO:0060416,GO:0060429,GO:0061008,GO:0065007,GO:0065008,GO:0070011,GO:0070013,GO:0070365,GO:0070408,GO:0070409,GO:0070542,GO:0070848,GO:0070887,GO:0071229,GO:0071310,GO:0071320,GO:0071363,GO:0071375,GO:0071377,GO:0071396,GO:0071398,GO:0071400,GO:0071407,GO:0071417,GO:0071495,GO:0071548,GO:0071704,GO:0071774,GO:0071941,GO:0072341,GO:0072527,GO:0072528,GO:0072593,GO:0090066,GO:0090407,GO:0097159,GO:0097237,GO:0097327,GO:0097367,GO:0097746,GO:0097755,GO:0140096,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901607,GO:1901652,GO:1901653,GO:1901654,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903717,GO:1903718,GO:2001057
EggNOG free text desc.carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
EggNOG OGsCOG0458@1,KOG0370@2759
EC2.1.3.2,3.5.2.3,6.3.4.16,6.3.5.5
COG Functional cat.EF
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002
Exons2
Model size273
Cds size273
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929418.2323272-CDS-H-paniculata_contig18251:3895..40481622929418.2323272-CDS-H-paniculata_contig18251:3895..4048Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18251 3896..4048 +
1691480852.9533918-CDS-H-paniculata_contig18251:3895..40481691480852.9533918-CDS-H-paniculata_contig18251:3895..4048Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18251 3896..4048 +
1622929418.2501154-CDS-H-paniculata_contig18251:4354..44741622929418.2501154-CDS-H-paniculata_contig18251:4354..4474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18251 4355..4474 +
1691480852.9721124-CDS-H-paniculata_contig18251:4354..44741691480852.9721124-CDS-H-paniculata_contig18251:4354..4474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18251 4355..4474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18251.4449.1prot_H-paniculata_contig18251.4449.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18251 3896..4474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18251.4449.1

>prot_H-paniculata_contig18251.4449.1 ID=prot_H-paniculata_contig18251.4449.1|Name=mRNA_H-paniculata_contig18251.4449.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
MCGFEQVNARLSRSSALASKATGYPLAFVAAKLGMGITLPEIENAITKRT
MACFEPSLDYCVTKVPRWDLSKFEGVSSNIGSAMSSVGEVM
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mRNA from alignment at H-paniculata_contig18251:3896..4474+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18251.4449.1 ID=mRNA_H-paniculata_contig18251.4449.1|Name=mRNA_H-paniculata_contig18251.4449.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=579bp|location=Sequence derived from alignment at H-paniculata_contig18251:3896..4474+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTGGATTTGAACAGGTGAACGCTCGTCTCAGCCGCTCTTCAGCGTT GGCTTCAAAAGCTACGGGATATCCTTTGGCTTTCGTCGCCGCCAAACTCG GAATGGGAATCACCCTGCCGGAGATCGAGAATGCTATCACCAAAAGGACG ATGGTGAGCGACTATAGAGCTTGTGAGGGTGAGAGATACAGGTCCGTCCT GTCTCTTGTCCGAACTATACAAGTCCATCGGAATATCTATCGCTGATTAT GGTTCCTGTTGACGTCCGTGTATGGTGGTATTTTGGATCATCGCTTTTAA GTTAAACAAGTGGATCATGACTATTTCGGCATTTTTTGGAGCATGATTGG ATGTTGTTATTATCTCTGGTACAACGTACCGTGGCTAGCTCGGACGCTTT TTCACCATGGCTACCCTTTGGTTTTTGAGTATATAAGCATGATTCATCCC AAATGATAGGCGTGCTTCGAGCCTTCGCTGGACTACTGCGTGACCAAGGT TCCGAGGTGGGACTTGTCCAAGTTTGAAGGCGTCTCTAGCAATATTGGCT CCGCCATGTCGAGTGTGGGAGAAGTTATG
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Coding sequence (CDS) from alignment at H-paniculata_contig18251:3896..4474+

>mRNA_H-paniculata_contig18251.4449.1 ID=mRNA_H-paniculata_contig18251.4449.1|Name=mRNA_H-paniculata_contig18251.4449.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig18251:3896..4474+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTGGATTTGAACAGGTGAACGCTCGTCTCAGCCGCTCTTCAGCGTT
GGCTTCAAAAGCTACGGGATATCCTTTGGCTTTCGTCGCCGCCAAACTCG
GAATGGGAATCACCCTGCCGGAGATCGAGAATGCTATCACCAAAAGGACG
ATGATGTGTGGATTTGAACAGGTGAACGCTCGTCTCAGCCGCTCTTCAGC
GTTGGCTTCAAAAGCTACGGGATATCCTTTGGCTTTCGTCGCCGCCAAAC
TCGGAATGGGAATCACCCTGCCGGAGATCGAGAATGCTATCACCAAAAGG
ACGATGGCGTGCTTCGAGCCTTCGCTGGACTACTGCGTGACCAAGGTTCC
GAGGTGGGACTTGTCCAAGTTTGAAGGCGTCTCTAGCAATATTGGCTCCG
CCATGTCGAGTGTGGGAGAAGTTATGGCGTGCTTCGAGCCTTCGCTGGAC
TACTGCGTGACCAAGGTTCCGAGGTGGGACTTGTCCAAGTTTGAAGGCGT
CTCTAGCAATATTGGCTCCGCCATGTCGAGTGTGGGAGAAGTTATG
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