mRNA_H-paniculata_contig1824.4444.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1824.4444.1 vs. uniprot
Match: A0A6H5JIK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIK7_9PHAE) HSP 1 Score: 352 bits (904), Expect = 4.850e-113 Identity = 186/272 (68.38%), Postives = 216/272 (79.41%), Query Frame = 3
Query: 129 LPILVLVLAAHSAVGFFLPSVHVVPAAQLISTGVVS-SAHGNRCHAQRRSSG----GLRKISGLSMAVEPHVLRLQAAELGHRLRGTNMYFVGMMGTGKSTVARSLANVMGRYIFLDTDSIIEELLTASVGEVFETDGEEAFRSVESQVLDQVHSYVKMCIATGGGVVTQPNNWGKMHTGIVVWLDMEPKDILGRMMKDPEQIKKRPLLAGPDPQAKLEQLMECRRSQYEQADVRVQLIPEEDVDDATMNVINSVLEFIDSNPPKWQQWKEK 929
LP+ L A +AVGF PS+HV P+A V S RC + G +R+ +GLSM VEPHVLRLQAAELG RLRGTN++FVGMMGTGKSTVAR+LA+VMGRYIFLDTD+IIEELL ASVGEVF DGEEAFRSVESQVLDQVHSYVKMC+ATGGG+V++ NWGKM TG+VVWLDM+PKDI R+ KDPE++ KRPLLAG DPQ KLE+L+E R+ QY QADV VQL PE+ VDD T NV+N++LEFIDSNPPKWQ+WKEK
Sbjct: 14 LPLFALCFVAKTAVGFIAPSLHVAPSAATPLKWVHQHSIPRTRCRVAGDTVGFRERRMRRSAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMKPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNAILEFIDSNPPKWQKWKEK 285
BLAST of mRNA_H-paniculata_contig1824.4444.1 vs. uniprot
Match: D8LTH1_ECTSI (Shikimate Kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH1_ECTSI) HSP 1 Score: 339 bits (869), Expect = 7.120e-109 Identity = 167/215 (77.67%), Postives = 191/215 (88.84%), Query Frame = 3
Query: 285 LRKISGLSMAVEPHVLRLQAAELGHRLRGTNMYFVGMMGTGKSTVARSLANVMGRYIFLDTDSIIEELLTASVGEVFETDGEEAFRSVESQVLDQVHSYVKMCIATGGGVVTQPNNWGKMHTGIVVWLDMEPKDILGRMMKDPEQIKKRPLLAGPDPQAKLEQLMECRRSQYEQADVRVQLIPEEDVDDATMNVINSVLEFIDSNPPKWQQWKEK 929
+R+ +GLSM VEPHVLRLQAAELG RLRGTN++FVGMMGTGKSTVAR+LA+VMGRYIFLDTD+IIEELL ASVGEVF DGEE FRSVESQVLDQVHSYVKMC+ATGGG+V++ NWGKM TG+VVWLDMEPKDI R+ KDPE++ KRPLLAG DPQ KLE+L+E R+ QY QADV VQL PE+ VDD T NV+N++LEFIDSNPPKWQ+WKEK
Sbjct: 1 MRRSAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEGFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEK 215
BLAST of mRNA_H-paniculata_contig1824.4444.1 vs. uniprot
Match: A0A835ZK89_9STRA (Shikimate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK89_9STRA) HSP 1 Score: 231 bits (589), Expect = 2.020e-67 Identity = 113/205 (55.12%), Postives = 157/205 (76.59%), Query Frame = 3
Query: 330 LRLQAAELGHRLRGTNMYFVGMMGTGKSTVARSLANVMGRYIFLDTDSIIEELLTASVGEVFETDGEEAFRSVESQVLDQVHSYVKMCIATGGGVVTQPNNWGKMHTGIVVWLDMEPKDILGRMMKDPEQIKKRPLLAGPDPQAKLEQLMECRRSQYEQA------DVRVQLIPEEDVDDATMNVINSVLEFIDSNPPKWQQWKE 926
+RLQ AELG +LRGTN+YFVGMMGTGK++VAR+LA+ MGRY F+DTD+IIE+L+ A V +VFE GEE FR +E++VL+++HSYVK+ +ATGGG+V + NWGK+ TG+VVWLDM DI+ R+ + E++ KR LL G D AKL+ + + R++ YEQA DVRV + P++ VD ++ ++ + +FIDSNPPKWQQWK+
Sbjct: 18 IRLQTAELGSQLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKWQQWKD 222
BLAST of mRNA_H-paniculata_contig1824.4444.1 vs. uniprot
Match: A0A7R9UH62_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UH62_9STRA) HSP 1 Score: 190 bits (482), Expect = 8.510e-52 Identity = 102/214 (47.66%), Postives = 134/214 (62.62%), Query Frame = 3
Query: 267 RRSSGGLRKISGLSMAVEPHVLRLQAAELGHRLRGTNMYFVGMMGTGKSTVARSLANVMGRYIFLDTDSIIEELLTASVGEVFETDGEEAFRSVESQVLDQVHSYVKMCIATGGGVVTQPNNWGKMHTGIVVWLDMEPKDILGRMMKDPEQIKKRPLLAGPDPQAKLEQLMECRRSQYEQADVRVQLIPEEDVDDATMNVINSVLEFIDSNPPK 908
R GLR AVE RL + RL GT++YFVGMMGTGKST R LA + Y FLDTD++IE +FE +GEE FR++ES V+DQ +Y ++CIATGGG V + NWGKM TGIVVWL MEP++I R + E+++KRPLL G D KL ++++ R+ +YE ADV VQL P + V++ V + F+D NPPK
Sbjct: 33 RLQQWGLRADVQEEKAVEDEFTRLAS-----RLYGTSIYFVGMMGTGKSTTGRELAKKLPGYSFLDTDTVIEAYAGQDCSAIFEKEGEEGFRNIESMVMDQACAYRRLCIATGGGAVLRNQNWGKMQTGIVVWLQMEPEEIAERFSGNDEEVEKRPLLQGGDAVDKLREILDKRKEKYEVADVHVQLSPGDSVEEVVERVCGKIHRFMDENPPK 241
BLAST of mRNA_H-paniculata_contig1824.4444.1 vs. uniprot
Match: A0A448ZQW6_9STRA (Shikimate kinase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQW6_9STRA) HSP 1 Score: 188 bits (478), Expect = 1.270e-50 Identity = 98/193 (50.78%), Postives = 132/193 (68.39%), Query Frame = 3
Query: 351 LGHRLRGTNMYFVGMMGTGKSTVARSLANVMGRYIFLDTDSIIEELLTASVGEVFETDGEEAFRSVESQVLDQVHSYVKMCIATGGGVVTQPNNWGKMHTGIVVWLDMEPKDILGRMMKDPEQIKKRPLLAGPDPQAKLEQLMECRRSQYEQADVRVQLIPEEDVDDATMNVINSVLEFIDSNPPKWQQWKEK 929
LG RL+G+N+Y VGMMG+GKS+V LA MG Y FLDTD IIE+ ++ E+FE++GEE FR VESQVLD VH+YV+ ++TGGG+V +P NWGK+ TGIVVWLD+ P+ IL R+ E + RPLL DP L+ L+E R +Y QAD+RV++ + D D ++ + FID NPP W+ K+K
Sbjct: 102 LGPRLQGSNLYLVGMMGSGKSSVGDKLARRMGSYKFLDTDEIIEKATKLTINEIFESEGEEGFRDVESQVLDTVHAYVRCVVSTGGGLVCKPKNWGKLQTGIVVWLDVAPEVILKRV----EGNEDRPLLKTKDPLQTLKDLLEERTPKYNQADLRVEITEDMDEDAVASRIVLDLHNFIDDNPPAWKLAKQK 290
BLAST of mRNA_H-paniculata_contig1824.4444.1 vs. uniprot
Match: A0A7R9ZGS2_9STRA (Shikimate kinase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZGS2_9STRA) HSP 1 Score: 185 bits (469), Expect = 2.050e-49 Identity = 98/210 (46.67%), Postives = 136/210 (64.76%), Query Frame = 3
Query: 300 GLSMAVEPHVLRLQAAELGHRLRGTNMYFVGMMGTGKSTVARSLANVMGRYIFLDTDSIIEELLTASVGEVFETDGEEAFRSVESQVLDQVHSYVKMCIATGGGVVTQPNNWGKMHTGIVVWLDMEPKDILGRMMKDPEQIKKRPLLAGPDPQAKLEQLMECRRSQYEQADVRVQLIPEEDVDDATMNVINSVLEFIDSNPPKWQQWKEK 929
G M ++P A LG RL+G+N+YFVGMMG+GKS V +A MG Y FLDTD IIE+ S+ E+F+ +GEE FR E+QVLD VH+YV+ I+TGGG+V + NW K+ TG+V+WLD++P+ I+ R+ D RPLL DP KL+ L+E RR +Y QADVR+++ + D + V+ + FID NPP W++ K K
Sbjct: 87 GEGMKIDP------ARLLGPRLQGSNLYFVGMMGSGKSAVGDVVARRMGTYNFLDTDEIIEKATAMSIPEIFDAEGEEGFREAEAQVLDSVHAYVRCVISTGGGLVCRMGNWSKLQTGVVIWLDVDPELIIKRIEGDTN----RPLLQADDPLQKLKDLLEERREKYSQADVRIEVTEDMDENAVADLVVKELHNFIDENPPAWKKAKAK 286
BLAST of mRNA_H-paniculata_contig1824.4444.1 vs. uniprot
Match: A0A7S2U848_9STRA (Shikimate kinase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U848_9STRA) HSP 1 Score: 183 bits (465), Expect = 7.470e-49 Identity = 96/193 (49.74%), Postives = 129/193 (66.84%), Query Frame = 3
Query: 351 LGHRLRGTNMYFVGMMGTGKSTVARSLANVMGRYIFLDTDSIIEELLTASVGEVFETDGEEAFRSVESQVLDQVHSYVKMCIATGGGVVTQPNNWGKMHTGIVVWLDMEPKDILGRMMKDPEQIKKRPLLAGPDPQAKLEQLMECRRSQYEQADVRVQLIPEEDVDDATMNVINSVLEFIDSNPPKWQQWKEK 929
L RL+GTN+YF+GMMG+GKS V +A MG Y FLDTD IIE+ + S+ +FE +GEE FRS+E+QVLD VH+YV+ I+TGGG V + +NW K TGIV+WLD++P ++ RM Q RPLL +P LE L+E R S+Y QAD+++++ PE D + VI + FID NPP W+Q K K
Sbjct: 98 LAPRLQGTNIYFIGMMGSGKSAVGDVVARRMGSYNFLDTDEIIEKATSMSIPSIFEAEGEEGFRSIEAQVLDSVHAYVRCVISTGGGAVCRLSNWSKFQTGIVIWLDVDPDTLISRM-----QGTDRPLLQTENPLETLETLLEERTSRYSQADIQLKITPEMDANAVAEMVIKELHFFIDENPPAWKQAKAK 285
BLAST of mRNA_H-paniculata_contig1824.4444.1 vs. uniprot
Match: A0A7S1Z366_TRICV (Shikimate kinase n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z366_TRICV) HSP 1 Score: 183 bits (464), Expect = 2.120e-48 Identity = 98/215 (45.58%), Postives = 138/215 (64.19%), Query Frame = 3
Query: 285 LRKISGLSMAVEPHVLRLQAAELGHRLRGTNMYFVGMMGTGKSTVARSLANVMGRYIFLDTDSIIEELLTASVGEVFETDGEEAFRSVESQVLDQVHSYVKMCIATGGGVVTQPNNWGKMHTGIVVWLDMEPKDILGRMMKDPEQIKKRPLLAGPDPQAKLEQLMECRRSQYEQADVRVQLIPEEDVDDATMNVINSVLEFIDSNPPKWQQWKEK 929
L+ G M ++P A LG RL+G+N+YF+GMMG+GKS V +A MG Y FLDTDSIIE+ ++ E+FE +GEE FR VE Q+LD VH+YV+ ++TGGG+V + NW K+ TG+VVWLD++P+ I+ R+ D + RPLL DP KL+ L+ R +Y QAD+R+++ + D D VI + FID NPP W++ K K
Sbjct: 107 LKVDDGEGMKIDP------ARLLGPRLQGSNLYFIGMMGSGKSAVGDIVARRMGTYNFLDTDSIIEKATGMTIPEIFEAEGEEGFRQVEGQILDSVHAYVRCVVSTGGGIVCRLQNWAKLQTGLVVWLDVDPEVIIKRIEGD----ENRPLLQTDDPLKKLKDLLGEREERYAQADLRIEVTEDMDEDAVANMVIKELHYFIDENPPAWKKAKAK 311
BLAST of mRNA_H-paniculata_contig1824.4444.1 vs. uniprot
Match: A0A1Z5KE71_FISSO (Shikimate kinase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KE71_FISSO) HSP 1 Score: 181 bits (459), Expect = 2.950e-48 Identity = 93/193 (48.19%), Postives = 129/193 (66.84%), Query Frame = 3
Query: 351 LGHRLRGTNMYFVGMMGTGKSTVARSLANVMGRYIFLDTDSIIEELLTASVGEVFETDGEEAFRSVESQVLDQVHSYVKMCIATGGGVVTQPNNWGKMHTGIVVWLDMEPKDILGRMMKDPEQIKKRPLLAGPDPQAKLEQLMECRRSQYEQADVRVQLIPEEDVDDATMNVINSVLEFIDSNPPKWQQWKEK 929
L RL G N+YF+GMMG+GK++V ++A MG Y FLDTD+IIE+ ++ E+FE +GEE FR VE+Q+LD VH YV+ I+TGGG+VT+ NW K+ TG+V+WLD+EP+ I+ R+ Q RPLL DP KL+ L+E R+ +Y+ AD+RV++ E D VI + FID NPP W+ K K
Sbjct: 78 LSPRLNGANLYFIGMMGSGKTSVGEAVARRMGSYTFLDTDAIIEKATKMTIPEIFEAEGEEGFRQVEAQILDSVHPYVRCVISTGGGIVTRMENWSKLQTGLVIWLDVEPEVIIKRI-----QGTDRPLLQTEDPLKKLKALLEERKPKYKNADIRVKVTEEMDTAAVADQVIYDLHHFIDDNPPAWKLAKAK 265
BLAST of mRNA_H-paniculata_contig1824.4444.1 vs. uniprot
Match: A0A6U3Q8M5_9STRA (Shikimate kinase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Q8M5_9STRA) HSP 1 Score: 179 bits (453), Expect = 3.510e-47 Identity = 97/218 (44.50%), Postives = 142/218 (65.14%), Query Frame = 3
Query: 285 LRKIS--GLSMAVEPHVLRLQAAELGHRLRGTNMYFVGMMGTGKSTVARSLANVMGRYIFLDTDSIIEELLTASVGEVFETDGEEAFRSVESQVLDQVHSYVKMCIATGGGVVTQPNNWGKMHTGIVVWLDMEPKDILGRMMKDPEQIKKRPLLAGPDPQAKLEQLMECRRSQYEQADVRVQLIPEE-DVDDATMNVINSVLEFIDSNPPKWQQWKEK 929
L KI G M ++P A LG RL+G+N+YFVGMMG+GKS V ++A MG Y FLDTD+IIE + A++ E+F +GE+ FR +ESQVLD VH++V+ ++TGGG+V + +NW K+ +G+V+W+D+ P I R+ KD + RPLL +P LE+L+E R+ +Y QADVR+++ E ++D V+ + FID NPP W+ K K
Sbjct: 78 LEKIGEDGEGMTIDP------ARLLGPRLQGSNLYFVGMMGSGKSAVGDAVARRMGSYNFLDTDTIIESVTNATITEIFAQEGEDTFRDIESQVLDSVHAHVRCVVSTGGGIVKKLSNWAKLQSGVVIWIDVPPSVIYNRI-KDKDD---RPLLQNDNPLETLEKLLEERKPRYSQADVRIEVNDESMSIEDVASKVVQDLHNFIDENPPAWKIAKAK 285 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1824.4444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1824.4444.1 >prot_H-paniculata_contig1824.4444.1 ID=prot_H-paniculata_contig1824.4444.1|Name=mRNA_H-paniculata_contig1824.4444.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=330bp MASIPTYKIVSLICLPILVLVLAAHSAVGFFLPSVHVVPAAQLISTGVVSback to top mRNA from alignment at H-paniculata_contig1824:5008..14015- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1824.4444.1 ID=mRNA_H-paniculata_contig1824.4444.1|Name=mRNA_H-paniculata_contig1824.4444.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9008bp|location=Sequence derived from alignment at H-paniculata_contig1824:5008..14015- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1824:5008..14015- >mRNA_H-paniculata_contig1824.4444.1 ID=mRNA_H-paniculata_contig1824.4444.1|Name=mRNA_H-paniculata_contig1824.4444.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1980bp|location=Sequence derived from alignment at H-paniculata_contig1824:5008..14015- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |