prot_H-paniculata_contig18239.4443.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig18239.4443.1
Unique Nameprot_H-paniculata_contig18239.4443.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length54
Homology
[Close]
BLAST of mRNA_H-paniculata_contig18239.4443.1 vs. uniprot
Match: D7G8R8_ECTSI (CNH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8R8_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.380e-22
Identity = 44/51 (86.27%), Postives = 48/51 (94.12%), Query Frame = 0 
Query:    1 ELLSGPNRCSLESCAPLLAASGPLFVEALLCLYRGRGMHHDALALATEERC 51
            ELLSGPNRCSL +CAPLLAASGP F+EALLCLYRGRG+H DALALATE+RC
Sbjct:  549 ELLSGPNRCSLAACAPLLAASGPSFIEALLCLYRGRGLHEDALALATEDRC 599
[Close]
BLAST of mRNA_H-paniculata_contig18239.4443.1 vs. uniprot
Match: A0A835YS55_9STRA (CNH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS55_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.400e-9
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 0 
Query:    4 SGPNRCSLESCAPLLAASGPLFVEALLCLYRGRGMHHDALALATEERC 51
            S P  C L + AP+LAA+G  FVEALL LYR +G+H +AL L +EERC
Sbjct:  541 SRPCHCDLSATAPVLAAAGAPFVEALLWLYRSKGLHREALGLLSEERC 588
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18239.4443.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8R8_ECTSI1.380e-2286.27CNH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YS55_9STRA1.400e-958.33CNH domain-containing protein n=1 Tax=Tribonema mi... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019452Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1PFAMPF10366Vps39_1coord: 1..48
e-value: 6.8E-6
score: 26.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18239contigH-paniculata_contig18239:4392..4553 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18239.4443.1mRNA_H-paniculata_contig18239.4443.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig18239 4392..4553 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig18239.4443.1 ID=prot_H-paniculata_contig18239.4443.1|Name=mRNA_H-paniculata_contig18239.4443.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
ELLSGPNRCSLESCAPLLAASGPLFVEALLCLYRGRGMHHDALALATEER
CEK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019452VPS39/TGF_beta_rcpt-assoc_1