mRNA_H-paniculata_contig18233.4442.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig18233.4442.1 vs. uniprot
Match: D8LM73_ECTSI (MCM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM73_ECTSI) HSP 1 Score: 206 bits (525), Expect = 2.570e-57 Identity = 104/133 (78.20%), Postives = 113/133 (84.96%), Query Frame = 2
Query: 368 VVTVKANAHIRIIRLPPLSDLCKSNISSIRGTDLGSLIQIQGTVIRSGAAKMLEVSR*YRCQNKTCSAVFSVHSD----------TSCPGVGEKQWKGFKFLEHGDHRYSDYQKVKIQEQAQKLSVGSIPRGV 736
V+TVK NAHIRI LPPLSDLCK NIS+IRGTDLG LIQIQGTVIRSGAAKMLEVSR YRCQNKTC AVFSVHSD TSCPGVGEKQ KG +F+EHGDH+YSDYQ++K+QEQAQKLSVGSIPR +
Sbjct: 94 VLTVKGNAHIRITHLPPLSDLCKPNISAIRGTDLGVLIQIQGTVIRSGAAKMLEVSREYRCQNKTCGAVFSVHSDMSQGNLLAPPTSCPGVGEKQCKGTRFMEHGDHKYSDYQEMKVQEQAQKLSVGSIPRSM 226
BLAST of mRNA_H-paniculata_contig18233.4442.1 vs. uniprot
Match: D7G551_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G551_ECTSI) HSP 1 Score: 145 bits (365), Expect = 2.830e-36 Identity = 85/167 (50.90%), Postives = 103/167 (61.68%), Query Frame = 2
Query: 356 EKQYVVT--------VKANAHIRIIRLPPLSDLCKSNISSIRGTDLGSLIQ------------IQGTVIRSGAAKMLEVSR*YRCQNKTCSAVFSVHSD----------TSCPGVGEKQWKGFKFLEHGDHRYSDYQKVKIQEQAQKLSVGSIPRGVHSSHDTAQRQ 766
E++Y+ T V+ +R P SD + + GSLI+ QGTVIRSGAAKMLEVSR YRCQNKTC AVFSVHSD TSCPGVGEKQ KG +F+EHGDH+YSDYQ++K+QEQAQKLSVGSIPR + + T+ R+
Sbjct: 17 ERRYLATIHRTIVSAVRPGERLRARSQRPRSDPLRLAACLLGAAPSGSLIRDSLIYLARAAGDAQGTVIRSGAAKMLEVSREYRCQNKTCGAVFSVHSDMSQGNLLAPPTSCPGVGEKQCKGTRFMEHGDHKYSDYQEMKVQEQAQKLSVGSIPRDHYRTVKTSLRR 183
BLAST of mRNA_H-paniculata_contig18233.4442.1 vs. uniprot
Match: A0A6H5JSZ1_9PHAE (MCM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ1_9PHAE) HSP 1 Score: 131 bits (329), Expect = 4.110e-33 Identity = 68/93 (73.12%), Postives = 74/93 (79.57%), Query Frame = 2
Query: 488 QGTVIRSGAAKMLEVSR*YRCQNKTCSAVFSVHSD----------TSCPGVGEKQWKGFKFLEHGDHRYSDYQKVKIQEQAQKLSVGSIPRGV 736
QGTVIRSGAAKMLEVSR YRCQNKTC AVFSVHSD TSCPGVG+KQ KG +F+EHGDH+YSDYQ +EQAQKLSVGSIPR +
Sbjct: 38 QGTVIRSGAAKMLEVSREYRCQNKTCGAVFSVHSDMSQGNLLAPPTSCPGVGQKQCKGTRFMEHGDHKYSDYQ----EEQAQKLSVGSIPRSM 126
BLAST of mRNA_H-paniculata_contig18233.4442.1 vs. uniprot
Match: A0A835Z090_9STRA (MCM2/3/5 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z090_9STRA) HSP 1 Score: 116 bits (291), Expect = 7.780e-26 Identity = 76/189 (40.21%), Postives = 91/189 (48.15%), Query Frame = 2
Query: 371 VTVKANAHIRIIRLPPLSDLCKSNISSIRGTDLGSLIQ-------------------------IQGTVIRSGAAKMLEVSR*YRCQNK-----------------------------TCSAVFSVHSDTS----------CPGVGEKQWKGFK---FLEHGDHRYSDYQKVKIQEQAQKLSVGSIPRGV 736
++VK NAH+R+ LP +SDLCK N+SSIR TDL +IQ IQGTVIR+G KMLEV+R Y+CQNK TC F V D S CPG G G K F E+G H YSDYQ++K+QEQ QKL VGSIPR +
Sbjct: 176 LSVKRNAHVRLAHLPSVSDLCKPNVSSIRNTDLNRVIQVQPILYMSTPADVIVCHKMRLLIYRIQGTVIRTGMVKMLEVTRQYQCQNKGADSVLLRKVLLIAQRRLICSYLLRSAWQTCGHTFEVACDMSQGNMLVPPRSCPGRGAPGSGGCKSSRFQEYGAHHYSDYQEIKVQEQVQKLGVGSIPRSI 364
BLAST of mRNA_H-paniculata_contig18233.4442.1 vs. uniprot
Match: A0A7S2WCY2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WCY2_9STRA) HSP 1 Score: 103 bits (257), Expect = 2.380e-21 Identity = 58/133 (43.61%), Postives = 76/133 (57.14%), Query Frame = 2
Query: 371 VTVKANAHIRIIRLPPLSDLCKSNISSIRGTDLGSLIQIQGTVIRSGAAKMLEVSR*YRCQNKTCSAVFSVHSDTS----------CPGVGEKQ-WKGFKFLEHGDHRYSDYQKVKIQEQAQKLSVGSIPRGV 736
++VK N +R LP + + CK N+SSIR +D+G L+QI GTVIR+ KMLE R Y+C + C F ++D CP VG K KF G R +DYQ++KIQE QKL VGSIPR +
Sbjct: 138 LSVKQNVTVRFTHLPAIPEFCKPNVSSIRASDVGGLVQICGTVIRTSTVKMLEYMREYKCSSSRCGHTFVTYADMEQGNVLEEPRLCPMVGRNPPCKCTKFDTIGS-RCTDYQEIKIQEHVQKLDVGSIPRSI 269
BLAST of mRNA_H-paniculata_contig18233.4442.1 vs. uniprot
Match: L1JGU1_GUITC (Minichromosome maintenance protein 9 n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JGU1_GUITC) HSP 1 Score: 102 bits (253), Expect = 7.070e-21 Identity = 55/139 (39.57%), Postives = 79/139 (56.83%), Query Frame = 2
Query: 356 EKQYVVTVKANAHIRIIRLPPLSDLCKSNISSIRGTDLGSLIQIQGTVIRSGAAKMLEVSR*YRCQNKTCSAVFSVHSD-----------TSCPGVGEKQWKGFKF-LEHGDHRYSDYQKVKIQEQAQKLSVGSIPRGV 736
E +Y + +K H R++ P +CK N+SSIR +D+G ++ I+GTV+R+G KMLE R Y C C F V+++ T+CP G K K F + G DYQ++KIQE+ QKLS+GSIPR +
Sbjct: 92 EDRYSMCIKKYIHPRLVVPPLCESVCKVNVSSIRSSDVGGVVSIRGTVVRAGTIKMLESEREYMCAK--CQFKFKVYANLEHQNGNLVPPTACPSAGAKPCKSTTFNIVEGSRVCRDYQEIKIQEEVQKLSIGSIPRSI 228
BLAST of mRNA_H-paniculata_contig18233.4442.1 vs. uniprot
Match: A0A5A8DW00_CAFRO (MCM domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DW00_CAFRO) HSP 1 Score: 101 bits (251), Expect = 1.410e-20 Identity = 55/133 (41.35%), Postives = 79/133 (59.40%), Query Frame = 2
Query: 371 VTVKANAHIRIIRLPPLSDLCKSNISSIRGTDLGSLIQIQGTVIRSGAAKMLEVSR*YRCQNKTCSAVFSVHSDTS----------CPGV-GEKQWKGFKFLEHGDHRYSDYQKVKIQEQAQKLSVGSIPRGV 736
++ K + H R+ LP + + K N+SSIR TD+GS +Q+ GTVIR+GA ++LE R Y+C + C+ F+V S CP G + + F+ +E R +DYQ+VKIQEQA L VGSIPR +
Sbjct: 120 LSFKPHVHARLSHLPGVPEYSKPNVSSIRATDIGSFVQVPGTVIRTGATRVLEAERQYQCSSAKCNFTFTVRSTVESGHTAEVPAICPSPSGTCKGRSFRLIEESVVR-TDYQEVKIQEQAHTLGVGSIPRSI 251
BLAST of mRNA_H-paniculata_contig18233.4442.1 vs. uniprot
Match: A0A5A8CLM3_CAFRO (MCM domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CLM3_CAFRO) HSP 1 Score: 101 bits (251), Expect = 1.520e-20 Identity = 55/133 (41.35%), Postives = 79/133 (59.40%), Query Frame = 2
Query: 371 VTVKANAHIRIIRLPPLSDLCKSNISSIRGTDLGSLIQIQGTVIRSGAAKMLEVSR*YRCQNKTCSAVFSVHSDTS----------CPGV-GEKQWKGFKFLEHGDHRYSDYQKVKIQEQAQKLSVGSIPRGV 736
++ K + H R+ LP + + K N+SSIR TD+GS +Q+ GTVIR+GA ++LE R Y+C + C+ F+V S CP G + + F+ +E R +DYQ+VKIQEQA L VGSIPR +
Sbjct: 128 LSFKPHVHARLSHLPGVPEYSKPNVSSIRATDIGSFVQVPGTVIRTGATRVLEAERQYQCSSAKCNFTFTVRSTVESGHTAEVPAICPSPSGTCKGRSFRLIEESVVR-TDYQEVKIQEQAHTLGVGSIPRSI 259
BLAST of mRNA_H-paniculata_contig18233.4442.1 vs. uniprot
Match: A0A812ZUJ1_9DINO (Mcm9 protein n=2 Tax=Sar TaxID=2698737 RepID=A0A812ZUJ1_9DINO) HSP 1 Score: 101 bits (251), Expect = 1.580e-20 Identity = 55/133 (41.35%), Postives = 79/133 (59.40%), Query Frame = 2
Query: 371 VTVKANAHIRIIRLPPLSDLCKSNISSIRGTDLGSLIQIQGTVIRSGAAKMLEVSR*YRCQNKTCSAVFSVHSDTS----------CPGV-GEKQWKGFKFLEHGDHRYSDYQKVKIQEQAQKLSVGSIPRGV 736
++ K + H R+ LP + + K N+SSIR TD+GS +Q+ GTVIR+GA ++LE R Y+C + C+ F+V S CP G + + F+ +E R +DYQ+VKIQEQA L VGSIPR +
Sbjct: 35 LSFKPHVHARLSHLPGVPEYSKPNVSSIRATDIGSFVQVPGTVIRTGATRVLEAERQYQCSSAKCNFTFTVRSTVESGHTAEVPAICPSPSGTCKGRSFRLIEESVVR-TDYQEVKIQEQAHTLGVGSIPRSI 166
BLAST of mRNA_H-paniculata_contig18233.4442.1 vs. uniprot
Match: F0XWD1_AURAN (MCM domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWD1_AURAN) HSP 1 Score: 95.9 bits (237), Expect = 9.950e-19 Identity = 53/130 (40.77%), Postives = 82/130 (63.08%), Query Frame = 2
Query: 380 KANAHIRIIRLPPLSDLCKSNISSIRGTDLGSLIQIQGTVIRSGAAKMLEVSR*YRCQNKTCSAVFSVHSD----------TSCPGV-GEKQWKGFKFLEHGDHRYSDYQKVKIQEQAQKLSVGSIPRGV 736
+A A +R + PPL + K+N+SS+R +D+G L+Q+ GTV+R+GA K++E R Y+C +C A F+V++D T CPG G +F+E G +DYQ+V++QE ++L+VGSIPR V
Sbjct: 136 RAKARLRCV--PPLPEHWKANVSSLRASDVGKLVQVCGTVVRAGAVKIIESCRTYQCGAASCGATFAVYADREQGNLLEKPTRCPGANGCGGCSSRRFVEVGREN-ADYQEVRLQEHVEQLAVGSIPRAV 262 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18233.4442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18233.4442.1 >prot_H-paniculata_contig18233.4442.1 ID=prot_H-paniculata_contig18233.4442.1|Name=mRNA_H-paniculata_contig18233.4442.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=146bp MRQRKYIRNMYALICLPSSRTLRGRFTRASQLMREALDLVQSRIVAQAEEback to top mRNA from alignment at H-paniculata_contig18233:2821..5033- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18233.4442.1 ID=mRNA_H-paniculata_contig18233.4442.1|Name=mRNA_H-paniculata_contig18233.4442.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2213bp|location=Sequence derived from alignment at H-paniculata_contig18233:2821..5033- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18233:2821..5033- >mRNA_H-paniculata_contig18233.4442.1 ID=mRNA_H-paniculata_contig18233.4442.1|Name=mRNA_H-paniculata_contig18233.4442.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at H-paniculata_contig18233:2821..5033- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |