mRNA_H-paniculata_contig1822.4438.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1822.4438.1
Unique NamemRNA_H-paniculata_contig1822.4438.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1822.4438.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 3.560e-23
Identity = 54/114 (47.37%), Postives = 74/114 (64.91%), Query Frame = 1
Query:    7 AFPYREAVGALMRATTMTGPDIAHAVRTTAEFCENPGVPYKRAVVKILQYVLRTADLGITYG-GQDCGIEMLSYADSDYATCLVSHRSVSGGAVLLEGRAISWHSRTQEVTTYS 345
            ++P+RE +G+LM   T T P+IA+A R  A +C +P   + RA + IL YV+RT+DLGIT+G G   G+ M  +AD+DYA+     RSVSGG V+     ISW SRTQ+  T S
Sbjct:   69 SWPFRELIGSLMWLATQTRPNIANAARAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAGLSMEVFADADYASKAADRRSVSGGFVMCGRGCISWFSRTQQCVTLS 182          
BLAST of mRNA_H-paniculata_contig1822.4438.1 vs. uniprot
Match: A0A6H5LC04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC04_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 9.060e-22
Identity = 53/114 (46.49%), Postives = 74/114 (64.91%), Query Frame = 1
Query:    7 AFPYREAVGALMRATTMTGPDIAHAVRTTAEFCENPGVPYKRAVVKILQYVLRTADLGITYG-GQDCGIEMLSYADSDYATCLVSHRSVSGGAVLLEGRAISWHSRTQEVTTYS 345
            ++P+RE +G+L+   T T PDIA+A+R  A +C +P   + RA + IL YV+RT+DLGIT+G G    + M  + D+DYA+     RSVSGG V+  G  ISW SRTQ+  T S
Sbjct:  905 SWPFRELIGSLVWLATQTRPDIANALRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAMLSMEVFGDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLS 1018          
BLAST of mRNA_H-paniculata_contig1822.4438.1 vs. uniprot
Match: A0A4S4KVR5_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4KVR5_9APHY)

HSP 1 Score: 92.8 bits (229), Expect = 1.300e-19
Identity = 51/115 (44.35%), Postives = 72/115 (62.61%), Query Frame = 1
Query:    1 MGAFPYREAVGALMRATTMTGPDIAHAVRTTAEFCENPGVPYKRAVVKILQYVLRTADLGITYGGQDCGIEMLSYADSDYATCLVSHRSVSGGAVLLEGRAISWHSRTQEVTTYS 345
            M   PYREA+G+LM A   T PDIA AV T A+F ENPG  +  AV ++ +Y+L T DL + YGG   G+E   + D+D A+     R+++G   L++G A+SW S+ QE+ T S
Sbjct:  761 MKKIPYREAIGSLMYAAVGTRPDIAFAVSTLAQFSENPGWVHWEAVKRVFRYLLGTRDLSLVYGGVQKGLE--GFVDADGAS-QEHRRAITGYVFLIDGGAVSWSSKKQELVTLS 872          
BLAST of mRNA_H-paniculata_contig1822.4438.1 vs. uniprot
Match: A0A060SPD4_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SPD4_PYCCI)

HSP 1 Score: 92.8 bits (229), Expect = 1.320e-19
Identity = 53/115 (46.09%), Postives = 72/115 (62.61%), Query Frame = 1
Query:    1 MGAFPYREAVGALMRATTMTGPDIAHAVRTTAEFCENPGVPYKRAVVKILQYVLRTADLGITYGGQDCGIEMLSYADSDYATCLVSHRSVSGGAVLLEGRAISWHSRTQEVTTYS 345
            M   PYREA+GALM A   T PDIA AV T A+F +NPG P+  AV +I +Y+L T  L + YGGQ   +E   Y ++D AT     R+++G   L++G A+SW S+ QE+ T S
Sbjct: 1092 MRRVPYREAIGALMYAALGTRPDIAFAVSTLAQFAQNPGQPHWDAVKRIFRYLLGTRTLSLIYGGQQRELE--GYVNADGAT-QEHRRAITGYVFLVDGGAVSWASKKQELVTLS 1203          
BLAST of mRNA_H-paniculata_contig1822.4438.1 vs. uniprot
Match: A0A060S825_PYCCI (CCHC-type domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060S825_PYCCI)

HSP 1 Score: 90.1 bits (222), Expect = 1.160e-18
Identity = 48/115 (41.74%), Postives = 70/115 (60.87%), Query Frame = 1
Query:    1 MGAFPYREAVGALMRATTMTGPDIAHAVRTTAEFCENPGVPYKRAVVKILQYVLRTADLGITYGGQDCGIEMLSYADSDYATCLVSHRSVSGGAVLLEGRAISWHSRTQEVTTYS 345
            M   PYREAVG+LM A   T PDIA AV T ++F +NPG  +  AV ++++Y++ T +L + YG  D GI+   ++D+D+ +      S+SG    L+G AISW S+ Q V   S
Sbjct: 1257 MSNVPYREAVGSLMYAVMGTRPDIAFAVTTLSQFMQNPGRAHWEAVKRVIRYLVGTRELWLVYGTSDDGIQ--GFSDADWGSSTEHRHSISGYVFTLDGGAISWSSKKQNVVALS 1369          
BLAST of mRNA_H-paniculata_contig1822.4438.1 vs. uniprot
Match: A0A2N9IDU9_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IDU9_FAGSY)

HSP 1 Score: 89.4 bits (220), Expect = 2.050e-18
Identity = 50/115 (43.48%), Postives = 66/115 (57.39%), Query Frame = 1
Query:    1 MGAFPYREAVGALMRATTMTGPDIAHAVRTTAEFCENPGVPYKRAVVKILQYVLRTADLGITYGGQDCGIEMLSYADSDYATCLVSHRSVSGGAVLLEGRAISWHSRTQEVTTYS 345
            M   PY  AVG+LM A   T PDIA A+     F  +PG+ + RA  K+L+Y+ RT D  +TY   D  +E++ YAD+DYA C    +S SG   +L G AISW S  Q +T  S
Sbjct:  466 MKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYRRSDL-LEVIGYADADYAGCADDLKSTSGYVFMLAGGAISWKSVKQTLTASS 579          
BLAST of mRNA_H-paniculata_contig1822.4438.1 vs. uniprot
Match: A0A2N9HDZ1_FAGSY (RNase H type-1 domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HDZ1_FAGSY)

HSP 1 Score: 89.4 bits (220), Expect = 2.170e-18
Identity = 50/115 (43.48%), Postives = 66/115 (57.39%), Query Frame = 1
Query:    1 MGAFPYREAVGALMRATTMTGPDIAHAVRTTAEFCENPGVPYKRAVVKILQYVLRTADLGITYGGQDCGIEMLSYADSDYATCLVSHRSVSGGAVLLEGRAISWHSRTQEVTTYS 345
            M   PY  AVG+LM A   T PDIA A+     F  +PG+ + RA  K+L+Y+ RT D  +TY   D  +E++ YAD+DYA C    +S SG   +L G AISW S  Q +T  S
Sbjct:  774 MKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYRRSDL-LEVIGYADADYAGCADDLKSTSGYVFMLAGGAISWKSVKQTLTASS 887          
BLAST of mRNA_H-paniculata_contig1822.4438.1 vs. uniprot
Match: A0A2N9GV19_FAGSY (Integrase catalytic domain-containing protein n=6 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GV19_FAGSY)

HSP 1 Score: 89.0 bits (219), Expect = 2.860e-18
Identity = 50/115 (43.48%), Postives = 66/115 (57.39%), Query Frame = 1
Query:    1 MGAFPYREAVGALMRATTMTGPDIAHAVRTTAEFCENPGVPYKRAVVKILQYVLRTADLGITYGGQDCGIEMLSYADSDYATCLVSHRSVSGGAVLLEGRAISWHSRTQEVTTYS 345
            M   PY  AVG+LM A   T PDIA A+     F  +PG+ + RA  K+L+Y+ RT D  +TY   D  +E++ YAD+DYA C    +S SG   +L G AISW S  Q +T  S
Sbjct:  572 MKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYRRSDL-LEVVGYADADYAGCADDLKSTSGYVFMLAGGAISWKSVKQTLTASS 685          
BLAST of mRNA_H-paniculata_contig1822.4438.1 vs. uniprot
Match: A0A369JJ40_HYPMA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Hypsizygus marmoreus TaxID=39966 RepID=A0A369JJ40_HYPMA)

HSP 1 Score: 89.0 bits (219), Expect = 2.970e-18
Identity = 50/111 (45.05%), Postives = 70/111 (63.06%), Query Frame = 1
Query:   13 PYREAVGALMRATTMTGPDIAHAVRTTAEFCENPGVPYKRAVVKILQYVLRTADLGITYGGQDCGIEMLSYADSDYATCLVSHRSVSGGAVLLEGRAISWHSRTQEVTTYS 345
            PYREAVG+LM A   T PDIA A  T A+F +NPG  +  AV +I +Y+L T DL + YG +  G+E   + D+D A+     R++SG   L++G A+SW S+ QE+ T S
Sbjct: 1357 PYREAVGSLMYAAMGTRPDIAFATSTAAQFSDNPGWVHWEAVKRIFRYLLGTKDLELVYGAEQKGLE--GFVDADGAS-QDHRRAISGYVFLVDGGAVSWSSKKQELVTLS 1464          
BLAST of mRNA_H-paniculata_contig1822.4438.1 vs. uniprot
Match: A0A2N9GYL9_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GYL9_FAGSY)

HSP 1 Score: 88.2 bits (217), Expect = 3.920e-18
Identity = 50/115 (43.48%), Postives = 66/115 (57.39%), Query Frame = 1
Query:    1 MGAFPYREAVGALMRATTMTGPDIAHAVRTTAEFCENPGVPYKRAVVKILQYVLRTADLGITYGGQDCGIEMLSYADSDYATCLVSHRSVSGGAVLLEGRAISWHSRTQEVTTYS 345
            M   PY  AVG+LM A   T PDIA A+     F  +PG+ + RA  K+L+Y+ RT D  +TY   D  +E++ YAD+DYA C    +S SG   +L G AISW S  Q +T  S
Sbjct:  127 MKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYRRSDL-LEVVGYADADYAGCADVLKSTSGYVFMLAGGAISWKSVKQTLTASS 240          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1822.4438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KD60_9PHAE3.560e-2347.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LC04_9PHAE9.060e-2246.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4S4KVR5_9APHY1.300e-1944.35Integrase catalytic domain-containing protein n=1 ... [more]
A0A060SPD4_PYCCI1.320e-1946.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A060S825_PYCCI1.160e-1841.74CCHC-type domain-containing protein n=1 Tax=Pycnop... [more]
A0A2N9IDU9_FAGSY2.050e-1843.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9HDZ1_FAGSY2.170e-1843.48RNase H type-1 domain-containing protein n=1 Tax=F... [more]
A0A2N9GV19_FAGSY2.860e-1843.48Integrase catalytic domain-containing protein n=6 ... [more]
A0A369JJ40_HYPMA2.970e-1845.05Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9GYL9_FAGSY3.920e-1843.48Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1822contigH-paniculata_contig1822:23603..23947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue5.5e-16
Seed eggNOG ortholog325452.fgenesh_scip_prom.46568.8151
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3QHW0@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size345
Cds size345
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929416.7520938-CDS-H-paniculata_contig1822:23602..239471622929416.7520938-CDS-H-paniculata_contig1822:23602..23947Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1822 23603..23947 -
1691480852.2310562-CDS-H-paniculata_contig1822:23602..239471691480852.2310562-CDS-H-paniculata_contig1822:23602..23947Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1822 23603..23947 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1822.4438.1prot_H-paniculata_contig1822.4438.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1822 23603..23947 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1822.4438.1

>prot_H-paniculata_contig1822.4438.1 ID=prot_H-paniculata_contig1822.4438.1|Name=mRNA_H-paniculata_contig1822.4438.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MGAFPYREAVGALMRATTMTGPDIAHAVRTTAEFCENPGVPYKRAVVKIL
QYVLRTADLGITYGGQDCGIEMLSYADSDYATCLVSHRSVSGGAVLLEGR
AISWHSRTQEVTTYS
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mRNA from alignment at H-paniculata_contig1822:23603..23947-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1822.4438.1 ID=mRNA_H-paniculata_contig1822.4438.1|Name=mRNA_H-paniculata_contig1822.4438.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at H-paniculata_contig1822:23603..23947- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGGCGTTCCCATACAGGGAGGCAGTGGGAGCGCTCATGCGGGCGAC GACAATGACAGGACCCGACATCGCACACGCCGTACGCACTACGGCAGAGT TCTGTGAGAACCCAGGAGTGCCGTACAAGAGAGCTGTGGTGAAGATTCTG CAGTACGTACTGAGGACCGCGGACCTGGGAATCACCTACGGGGGACAGGA CTGCGGGATCGAAATGTTGTCTTACGCTGACTCGGATTACGCGACGTGCC TAGTCAGCCATCGGTCGGTCTCCGGCGGAGCGGTCCTGCTGGAGGGGCGC GCGATCAGTTGGCACTCGAGGACTCAGGAGGTGACGACCTACAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1822:23603..23947-

>mRNA_H-paniculata_contig1822.4438.1 ID=mRNA_H-paniculata_contig1822.4438.1|Name=mRNA_H-paniculata_contig1822.4438.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig1822:23603..23947- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGGCGTTCCCATACAGGGAGGCAGTGGGAGCGCTCATGCGGGCGAC
GACAATGACAGGACCCGACATCGCACACGCCGTACGCACTACGGCAGAGT
TCTGTGAGAACCCAGGAGTGCCGTACAAGAGAGCTGTGGTGAAGATTCTG
CAGTACGTACTGAGGACCGCGGACCTGGGAATCACCTACGGGGGACAGGA
CTGCGGGATCGAAATGTTGTCTTACGCTGACTCGGATTACGCGACGTGCC
TAGTCAGCCATCGGTCGGTCTCCGGCGGAGCGGTCCTGCTGGAGGGGCGC
GCGATCAGTTGGCACTCGAGGACTCAGGAGGTGACGACCTACAGCATGGG
GGCGTTCCCATACAGGGAGGCAGTGGGAGCGCTCATGCGGGCGACGACAA
TGACAGGACCCGACATCGCACACGCCGTACGCACTACGGCAGAGTTCTGT
GAGAACCCAGGAGTGCCGTACAAGAGAGCTGTGGTGAAGATTCTGCAGTA
CGTACTGAGGACCGCGGACCTGGGAATCACCTACGGGGGACAGGACTGCG
GGATCGAAATGTTGTCTTACGCTGACTCGGATTACGCGACGTGCCTAGTC
AGCCATCGGTCGGTCTCCGGCGGAGCGGTCCTGCTGGAGGGGCGCGCGAT
CAGTTGGCACTCGAGGACTCAGGAGGTGACGACCTACAGC
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