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Homology
BLAST of mRNA_H-paniculata_contig1822.4436.1 vs. uniprot
Match: A0A6H5KN23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN23_9PHAE) HSP 1 Score: 157 bits (396), Expect = 6.440e-41 Identity = 79/146 (54.11%), Postives = 91/146 (62.33%), Query Frame = 1
Query: 76 EVFFGDYNGHMRPLSRMYFSSDSRCLVADHPQSVQEEVESHFCPHCNSLWAWQEAQGIGNRCLQCFECPDCDCVLTPSPTSLESLAXXXXXXXXXSLKNLPPLSPAGKYASSTASTALEFCLRCLYCHWSSEDELAVVAPDLASLA 513
EV +GDYNG++RPLS MYFS DSRCLVADHP+SVQEEVESHFCPHC S + +A NRC CFECP C CVL PSP SL+ + ASS +S +CLRCLYC W+SED +VA D A LA
Sbjct: 3 EVLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFFRTPDAVSTENRCPHCFECPCCRCVLVPSPVSLD------------------------RSASSFSSAGTSYCLRCLYCQWTSEDS-GLVAQDPAGLA 123
BLAST of mRNA_H-paniculata_contig1822.4436.1 vs. uniprot
Match: D7FRF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF1_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 2.350e-20 Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 1
Query: 76 EVFFGDYNGHMRPLSRMYFSSDSRCLVADHPQSVQEEVESHFCPHCNSLWAWQEAQGIGN 255
EV +GDYNG++RPLS MYFS DSRCLVADHP+SVQEEVESHFCPHC S + +A N
Sbjct: 3 EVLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFFRTPDAMSAEN 62
BLAST of mRNA_H-paniculata_contig1822.4436.1 vs. uniprot
Match: W7T460_9STRA (Dynactin p62 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T460_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 4.990e-15 Identity = 45/138 (32.61%), Postives = 66/138 (47.83%), Query Frame = 1
Query: 76 EVFFGDYNGHMRPLSRMYFSSDSRCLVADHPQSVQEEVESHFCPHCNSLWAWQEAQGIGNRCLQCFECPDCDCVLTPSPTSLESLAXXXXXXXXXSLKNLPPLSPAGKYASSTASTALEFCLRCLYCHWSSEDELAVV 489
+V F DY G PL+ +++S+ S+CLV+ HP+S EEVES +C HC + +A EA +RC +CF+CP C L ES + + A + RC YC WSS D + ++
Sbjct: 37 KVVFTDYQGWWAPLTHLFYSNASQCLVSAHPESSIEEVESFYCSHCLNYFADAEAASSYHRCPRCFDCPQCTSALLIISVDEES-----------------------NHEENDAG----YTFRCGYCRWSSADSIGLI 147
BLAST of mRNA_H-paniculata_contig1822.4436.1 vs. uniprot
Match: A0A7S1ISB2_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1ISB2_9EUGL) HSP 1 Score: 52.4 bits (124), Expect = 3.580e-5 Identity = 25/85 (29.41%), Postives = 42/85 (49.41%), Query Frame = 1
Query: 70 PTEVFFGDYNGHMRPLSRMYFSSDSRCLVADHPQSVQEEVESHFCPHCNSLWAWQEAQGIGNRCLQCFECPDCDCVLTPSPTSLE 324
P ++G L ++ S + LV S+Q+E+E+++CP C + Q IG RCL C +CP C L+ S +++
Sbjct: 9 PVAAYYGTSGAQRLRLHDLFLSPVTWTLVTR--DSLQQEIETYYCPQCLQEFRTQTQLDIGGRCLDCCDCPVCGTGLSDSVRTVD 91
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Dynactin subunit 4 |
| Ec32 ortholog | Ec-21_002710.1 |
| Exons | 2 |
| Model size | 619 |
| Cds size | 615 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1822.4436.1 >prot_H-paniculata_contig1822.4436.1 ID=prot_H-paniculata_contig1822.4436.1|Name=mRNA_H-paniculata_contig1822.4436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=205bp
SVYAESNEARVPAATMTSSAQPHPTEVFFGDYNGHMRPLSRMYFSSDSRC LVADHPQSVQEEVESHFCPHCNSLWAWQEAQGIGNRCLQCFECPDCDCVL TPSPTSLESLALAFSPSPSPSLKNLPPLSPAGKYASSTASTALEFCLRCL YCHWSSEDELAVVAPDLASLAEAMSAGEKKRADGGAGVVGLVAAAKQREM LALRE back to topmRNA from alignment at H-paniculata_contig1822:3090..9744- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1822.4436.1 ID=mRNA_H-paniculata_contig1822.4436.1|Name=mRNA_H-paniculata_contig1822.4436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6655bp|location=Sequence derived from alignment at H-paniculata_contig1822:3090..9744- (Halopteris paniculata Hal_grac_a_UBK monoicous) TCAGTGTATGCCGAGAGCAACGAAGCTAGGGTCCCTGCAGCCACCATGAC
TAGTAGTGCTCAACCGCACCCAACAGAGGTTTTTTTTGGGGACTATAATG
GGCACATGCGTCCGCTTAGTCGTATGTATTTTTCGTCAGACAGCAGGTGT
CTCGTGGCCGACCATCCCCAGAGTGTGCAGGAAGAGGTGGAGTCGCATTT
CTGCCCACACTGCAATTCACTCTGGGCCTGGCAGGAAGCACAGGGTATTG
GCAATAGGTGCGTCATGTCATGCTCCTGAAAGTGTGTTGCGGATCATAGC
GACCTGAGCGCATATGCCGGAGTGCGCGCAGCAAGGATTGTGTCAATTTG
GTTCTTGCTATTTGCGAGAAAGAGTGTGCACAACACTAAAGCTGCTGCGG
CTGCAACAACTGAAATCTGCAACCGGACCACCAGACTGGACATCGCTGAC
CTTAGGTGGTGTCTGTACACCTCGTTCTTGGATACGAGTCAGATGCATCT
CTCTGTTGGCTAACTGTCCGATGAGCACTTATTGCCGTGTTGTCGTATGA
TGTTGGTATGCACGCTCGTTCGAGGAGTCTGTCAGCGCGCGGGACTTTCA
CAATCACTTCCGCAAGAAAGGTCTCCTATGAATAGGAAAAAGGTTCTCGC
CAGCCCTTCACCACATTCCTTCTGATGTTGCAGTACTGCAATTCTGTCTG
TAACTTTCGACGTCGGTTTATTAGAGTTCATATTTTATCATGCATCCATT
TTCCAGCGCTACGATATATGCCGTGAGAATGTTTGCGACACGGTGTATGG
TCATGAGTGGCATCAGCGTTAAAACAGTGTTTTTTTAACTGCTGTCTAAA
CATCTGCACCCCTGAGGAGACATTTCGGAACAGAAATAAGCGGAGCATCG
GAGTTTGAGTCTGCTGCTGTAGAGCAACTATCTGTGGATATTAAACAAAA
TGTATATCGACCGCACTTTTAGCTAACCGGAGGAAGCTTCAAGGTGAAAG
TGTGGTAGTGGTCATAGCTTGGCCTTTTTTTTTTTTTTCAAAGATTAGAG
TTGTCCCATGGGAATCTCAGGTCCAAACCTTAAAGTGTAGTACCTCGGTT
GCCTTGTATTATCCGGCGATGGGGACATCAGTCCCACCAGCTCGTTAACG
TTGAAGTTGACAGCGTTATACGCTTGAGATTTTTATCATCTCTTCCGCAG
CAATGTTTTGCCGCGTACCTTGCGGCTACTACTACGGAGGACGATAGTAA
ATGATTTCTCTACGTATCTCACAAACTATGGGGTTTCAGAAAACAAATGA
TGCAAATCGATCGCGGGAAGAGATAAATTCGACGAGAAAAATTGACAAGT
AAAAACAAAAGTGAGATGTAATCAATATTGTACATTTTTAGGGGGTTTGT
TCGTCAAATCCCGGAATTTTTTTCACCTCAGTGAGCTTTGAGGGTTCATA
ACTGGATCAATTTTTTGGATTTGCTCTACGAAATATAGTGCAAACAAACT
CTAACGTTCATGCCAACATCCTGCAAAAGGTGATTCGGACATGTTTTGGT
CGAGTTACGCCCTGTCGATGCCTTACCAGGCGTTCGGGGGGTAAGGGAGG
GGTGTCACGTTTAGTCCGGTGGTTTGTTGAGCAACGGAAGCTTGTGCACG
ATAGCCGTTGAAGTCGAGTTTCTACATTATGCAATGCGTGACTCGGGAAT
TTAAACGGAAAAGTGTAAAATTCGGAACCTTAGAACCTTTGACACTCGAG
GATAACGCTAAGACAGCGCCGCTGCACATGGTTGCAAGTCACCGTTGGCC
GACCGCGCTTCGCGTGAGAAACTATGTCGAGTTTTGTTGGGCGAGCGATT
TACACTGTACAGCAGGTGTATGGTAGAACCTGCGTTGAAATAAAACGGCA
GCATAGCAAAGCACGCTGCGGTACAGAGAAATACGGCACATGCCGACCGG
TACAGACAACTGCACCGCTCAGGCTGACCGTGGTGTACAGTGCAGTAATG
AATAGTACTACAAATGAAGTATACTGCAACACACGGCACCGCTGCAGCAC
GATGCAGTGAGGCGATGTCACGGCAAACACTCTGCTGTACAAAACAGAAG
CCTACCGCGCGCAGTGTAGTAGACCAACAACGCGGCGACAACACGCAGCC
CGGCACGCATCGAAGATCCAATTAGCGGCACCGTGCTGTGCTGTTTTCAC
TTGACTTTAGTATTCCAACTGTAGCGCGCGCAACGCACAAAAGCAATCTT
GTACTGTACAGACAGTATGCTATTAACACTGGGGCAAAGTTATTCAAAAC
ACCGAGAAAAAGAGCACACAAGAGGATACAACAATACCACACCGTCTGCT
GCAGAACTGTACGCTGTGCATTCAATGCGCGCTGTGCACCTGGAGCGTAC
CACGTCGTCTTTGGGTGTTCATATCTCGTCAACGGCAGCGAAGTTCTAAA
TTTCGGAATGACCAAAATTCGCGTCATATTCTAAAGTTCTCACAGGAACT
GATTCTACAATTTGGTTGTAAAAAATCGTTGCGAAAAAACTGTAAACTCC
GAAAAAAACATGTTGTAGTTCTTGTTTGTACGCGCTTGCAATGTGCACTG
CACAAGGTCGTAGAAGGTAAAGCTGGTATCATGGGAGATATTGTATTCTC
AGCATTACTCACACGTATTTCTGTGATTGAAGACGATCATGCATGTCGAC
GTGTACGAGAAAGTGTGGTGTGTTGTGTAAAAAAACGTGCTTTTCGGTAA
GAAAAACGCTGAAATCTAGTTATTTATTATGGTCTTTGGTGGTAAAATAT
TTTCGGTGTATGTCTTGAGAAGAAAAATTGTGTTGAAGTTACAGGAAAGT
GAAAACACCATCTACCGTATGTCATCCGTGTTCGTTTTGGGTGTATGACG
TTGATACGGGTAATGTGACGGGAGAAGAAATCAAGCGCAGCAGCAAAGTC
TTATCTCATTTAAAACTGAGAATCTTCGATTCATTTTTTTTTCAAACCCC
CGGAAGGCTCGGGCAAAACCCTCTATCCGATGCTTCCATACCGAAGTACG
CCTACATTTCCTTTTACAGAACAGTTATTTATTCCTCTGTGGGGTAGGCG
CCACCCCGGTTCGGCCGAACCAGGTATGCAGTGTGGGGGTTGCACCCACT
AACAGATCTCTGACTAGACTTCCAGTCATGCTCAGTTGACGAGCTACCCT
ACCCGTTTGGGCGTAGGTCCGTGGGGGGGTGAGGATGATAGGGTATCTGT
CGTAACCCAGGAAGATGTTCAACCCGAAAGACAATGCAACCAACCTCTTA
CTCAACTTACTCTGAGACCTGCGGTGATTTTTGAGCGCGTTTGAGTATGG
TAGCACGTAGTGTGTGCTGCACTTTTGAGCGGCTCGTGGGTGGTTCCATC
ATCTTGGAAGTGTCCTAATGTTTGCGGAAAGTTGTCATCTACTCTCACCA
TGGCAAAAGTACCCTGTGTTCAAAAGTTGTCATTGATACGCAAAACTCGG
CCTGTACAACAAACACTATAGAGCACGAAGCCAACCGTCGCGAGCACGAT
GGGATGCAAGAGACGGGGCCTCATGCTGATGGCCAAATTCTGCAAGAATG
GACAACGCGTGTGCGAGGGCGCGCAAAAGAGGCATGTGATGCCGGAAAAA
TCGCTCTTGGGATAATTGCAGTTACTCTGTTAGGCTTCTACTCCAAAATC
CACAATAACCCTGTGTTGCAAAATCAGAGGATGACGTCGATGCTGAGAGA
TATTGACAAGATTCCTCGAATCAAAGAACGTGTCCTGTTATTATTCATTT
TTCTCATGGGAGAGTCACTAGTGGGACAGCTGCACACTCGAAAACAGCAC
ATCCAAATGTGTAATAGCACTAGTCACCGTACAACACGCTTGCAGCCACT
TTTCCGACCGTTCACCCGACGAATTGGTGTAATCTAGGGCGATCGCTTGG
GAGTCAAATTTTCTAGGGTTGACAAAATAGCACTATTCCACAGACAAAGA
CGAATGAAGCATTCGCAACTATCTCGAACTATCATTATTTGTCTTGGGGT
AAACACGTATTTATTCGTTTACAAGTCTACAGATGGCCGCGAAGCGGTTG
TATACCCTGCGAACAGTCACACATGCAGGCCTTGTTGTTTTCCGGTTCGT
ACTGTATAGACTGAGTTCTCTATTTGCCCGAGCTTTTCGATGCTCTATGG
TATATCGAGTGCACTGCATATTATTCGCGTCACATGGACATCTGCGGCAG
CTCAAACAGGTACAATATTCGTCACAAGTTTCTCGTGTTTATTCGTGGCT
TGTATTCGTATTTGTCGAGGGCGTGCAATAGTGCTGATTTACGGGTAAAG
TAGAGCCAATTTTTAGGAGCACCTCTGTTCTGTTGGAACTGCACGTCAAT
ACAAACAAAAAAATGCCGTCAGTGCTGTGTACAAACAGTTGGTACGTGGC
ACAAACTTTTGTTTACATTTTGGAGGATGCAGATCATCTGCGAAGACACA
ATCTGCATGGGCAAGTAGTGCTCAGGTTCACGTAAATGTCGACTCCATTT
TTTAAGCTGATTCAACATTCCTAATAACCGTAGTCGCTTGGACATAACTT
GGGCTATCGTCCAGTACAGTCGTTGAGCAAATCCATCAAGTTTTCAGCGA
TGGTCCTTGGCGGAAATAGTGATTAGGCCTGTAGCAACATCTACGCGCTC
CTGCGCAGCTGGACTTCAAGCCTCGCCCACAGGATGCCTGATGTCTTCTC
GCCCGTCTAGTCTCCTGTACCAATTCCCAATCAAACGATCGGAATGGGAA
CTCATGGCGTACCTGTTGTTCGCGCCGCTAACTTAGGGGACAACCGAACC
GGGGTGGCGCTTACCCCGCAGAGGAATAAATATATCTGTTCTGTTAAAGG
AAATGTAGACATACTTTGGTGAAATACTCGAGTAGGGAAGCATGGGTAAA
GGTTTTTGCCTCAGCCTTCCGGGGGTTGAAAAGAAAAGAAAAATCTATTG
GTATGCCGGAACCACCACACCCAAATATCCGTGAGGTCCAATTGAAAGAC
AGTCAAAAGTCAGTTCACGCGGTGGCCTCAACCCCCCCTCCCCTCTCCCC
CCTCTCTCATATTGATCTATATTTGGTGACAAGGGGTATACCCCCTCTGT
CCGATGAGTCTGTGGGATGGGAACTGTAAGTTTTGTACGAGACATGAAGT
GAAGAAACGGTTGCTCTCGTTGGATTCCTTGGTGTTTTTTGGATGTGGGA
TGGCCCCTTGCGTCATACTTTTCAACAGCCATCATGTCCGCGGGCAGCTT
GAGATGGGCTTCTCGGTCGAAACATGCATAAAAACGGCGAAAATGCGCAA
AGGCGCACGCAACAACAAAAAGGTGCCACAATAGCCTGCCCTTCGCGTTC
GCACGAGTCTCCGGGCCCCAGCCACACCTCCAAACATACATCAGGATAGG
TGTAATATGAACGCACGAAGTCTCAGCGTTCGACGAAGCCCATCCACATC
AGTTGTGTGATGCTGGTGCTCAAGCCGAATACACATCGGAGTTGTCCCTG
CGATAGCTCAAATGAACGTGCAGGCTCCCAGTTTTCGATCGATGACACTC
ACAACCCTTGAAAACCGCAGTAGAGCCCCGAGAAACAGTACGCCAAAGTT
GGACAATGGAGTCATTTAGTGACTCCAGATGTTTTTCGCAAGAAAACAAT
CGACATATAGCCGAAGAACCAACCGGGGCAGCGCCTACCCCGCAGAGGAA
CAAATAACTCTATTCTGTAAAAGGAAACGTAGACGTACTTCGGTATGGAA
GCATCGGATAGAGGTTTTTGCCTTAGCCTTTTCGGGGGTTAAAGAAAAGA
AAAAAAGCCGAAGAACCGAGCTTTACTTGAAGCCTTCGTGGCTTTCTCCA
ACTATGCATCTGACCAACATCCGGCATGCTCATTTCAATGCTGAGAGCCC
CAGCTTTTAGCCAAATCCCACTATCAACCAATATACATATATCTCAAAAT
TGGGTGCGCTGTGCTCGCCAAAAGAATGCCCCAGAGTTATGGGACAGAGG
GAGTACAGGAGAATATTTAGATCAGCTGCACATACCATCAAGATGGGTAT
AATGGATGTAGTTATTATATAAGGTTCAGAGTTATAGTCCCTCTAGCTGT
GGTAGGGTTAACTGGTGCATGTTTCCTTGTGTTCGGCTCGTCACCGCCGC
TTCAGCCGTCTCTTCCAAAACAAAAGTCACATACCACTTCAACACCTCTC
TCGCCGCACACTGATATCTGCCCTTCAAAACAACACTCTGCGCAGGTGCC
TCCAGTGCTTCGAGTGCCCAGACTGTGACTGTGTCCTGACGCCCAGTCCC
ACCAGCCTCGAGTCGCTAGCCTTGGCGTTCTCTCCGTCTCCGTCCCCGTC
TCTCAAAAACCTGCCTCCCCTATCCCCGGCCGGAAAATATGCCTCCTCCA
CTGCATCGACGGCGCTGGAATTTTGCCTGCGCTGCCTCTACTGTCATTGG
TCGAGCGAGGACGAGCTAGCGGTGGTCGCACCCGATCTCGCTTCGCTCGC
GGAGGCCATGTCTGCCGGGGAGAAGAAGAGGGCGGATGGGGGGGCTGGCG
TTGTGGGGCTGGTGGCGGCGGCGAAGCAGCGTGAGATGCTTGCGCTTCGT
GAGGC back to topCoding sequence (CDS) from alignment at H-paniculata_contig1822:3090..9744- >mRNA_H-paniculata_contig1822.4436.1 ID=mRNA_H-paniculata_contig1822.4436.1|Name=mRNA_H-paniculata_contig1822.4436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1230bp|location=Sequence derived from alignment at H-paniculata_contig1822:3090..9744- (Halopteris paniculata Hal_grac_a_UBK monoicous) TCAGTGTATGCCGAGAGCAACGAAGCTAGGGTCCCTGCAGCCACCATGAC TAGTAGTGCTCAACCGCACCCAACAGAGGTTTTTTTTGGGGACTATAATG GGCACATGCGTCCGCTTAGTCGTATGTATTTTTCGTCAGACAGCAGGTGT CTCGTGGCCGACCATCCCCAGAGTGTGCAGGAAGAGGTGGAGTCGCATTT CTGCCCACACTGCAATTCACTCTGGGCCTGGCAGGAAGCACAGGGTATTG GCAATAGTCAGTGTATGCCGAGAGCAACGAAGCTAGGGTCCCTGCAGCCA CCATGACTAGTAGTGCTCAACCGCACCCAACAGAGGTTTTTTTTGGGGAC TATAATGGGCACATGCGTCCGCTTAGTCGTATGTATTTTTCGTCAGACAG CAGGTGTCTCGTGGCCGACCATCCCCAGAGTGTGCAGGAAGAGGTGGAGT CGCATTTCTGCCCACACTGCAATTCACTCTGGGCCTGGCAGGAAGCACAG GGTATTGGCAATAGGTGCCTCCAGTGCTTCGAGTGCCCAGACTGTGACTG TGTCCTGACGCCCAGTCCCACCAGCCTCGAGTCGCTAGCCTTGGCGTTCT CTCCGTCTCCGTCCCCGTCTCTCAAAAACCTGCCTCCCCTATCCCCGGCC GGAAAATATGCCTCCTCCACTGCATCGACGGCGCTGGAATTTTGCCTGCG CTGCCTCTACTGTCATTGGTCGAGCGAGGACGAGCTAGCGGTGGTCGCAC CCGATCTCGCTTCGCTCGCGGAGGCCATGTCTGCCGGGGAGAAGAAGAGG GCGGATGGGGGGGCTGGCGTTGTGGGGCTGGTGGCGGCGGCGAAGCAGCG TGAGATGCTTGCGCTTCGTGAGGTGCCTCCAGTGCTTCGAGTGCCCAGAC TGTGACTGTGTCCTGACGCCCAGTCCCACCAGCCTCGAGTCGCTAGCCTT GGCGTTCTCTCCGTCTCCGTCCCCGTCTCTCAAAAACCTGCCTCCCCTAT CCCCGGCCGGAAAATATGCCTCCTCCACTGCATCGACGGCGCTGGAATTT TGCCTGCGCTGCCTCTACTGTCATTGGTCGAGCGAGGACGAGCTAGCGGT GGTCGCACCCGATCTCGCTTCGCTCGCGGAGGCCATGTCTGCCGGGGAGA AGAAGAGGGCGGATGGGGGGGCTGGCGTTGTGGGGCTGGTGGCGGCGGCG AAGCAGCGTGAGATGCTTGCGCTTCGTGAG back to top
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