mRNA_H-paniculata_contig18210.4430.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18210.4430.1
Unique NamemRNA_H-paniculata_contig18210.4430.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18210.4430.1 vs. uniprot
Match: A0A6H5L9W7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9W7_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 6.270e-30
Identity = 59/68 (86.76%), Postives = 63/68 (92.65%), Query Frame = 1
Query:    1 SGMPPFMAAWAGQQLRKINGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEVSSFATEFLQRKQSLR 204
            SGM P MA+WA QQL+K++GKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEVSSFATEFLQRKQ  R
Sbjct:  556 SGMSPAMASWASQQLKKMSGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEVSSFATEFLQRKQQGR 623          
BLAST of mRNA_H-paniculata_contig18210.4430.1 vs. uniprot
Match: A0A835ZDV0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDV0_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.990e-26
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 1
Query:    4 GMPPFMAAWAGQQLRKINGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEVSSFATEFLQRKQS 198
            GMPP MAAWA  +L+K+ G +D+TLL+FCMS TDASE+R+ LAAYLGSTP+VSSFAT FLQRKQ+
Sbjct:    2 GMPPDMAAWAQAELKKLGGGEDITLLDFCMSSTDASEVREVLAAYLGSTPQVSSFATNFLQRKQA 66          
BLAST of mRNA_H-paniculata_contig18210.4430.1 vs. uniprot
Match: A0A2D4BK92_PYTIN (GYF domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BK92_PYTIN)

HSP 1 Score: 92.8 bits (229), Expect = 1.970e-20
Identity = 43/67 (64.18%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    1 SGMPPFMAAWAGQQLRKINGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEVSSFATEFLQRKQSL 201
            S MP    AW  + L+ ING DDLTL+E+C +L D  EIR+YLAAYLGSTP VS+FATEF+QRK+SL
Sbjct:  780 SSMPSEFMAWCAKNLKAINGSDDLTLVEYCATLEDPGEIREYLAAYLGSTPRVSAFATEFIQRKKSL 846          
BLAST of mRNA_H-paniculata_contig18210.4430.1 vs. uniprot
Match: A0A7S2LIW4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LIW4_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.280e-20
Identity = 38/59 (64.41%), Postives = 49/59 (83.05%), Query Frame = 1
Query:    7 MPPFMAAWAGQQLRKINGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEVSSFATEFL 183
            M P M  W   Q++K+NG DDLTL+ FCM+LTD+ EIRQYL+AYLGSTP+V++FATEF+
Sbjct:  108 MTPTMEKWCKDQMQKLNGSDDLTLVTFCMTLTDSDEIRQYLSAYLGSTPQVNNFATEFI 166          
BLAST of mRNA_H-paniculata_contig18210.4430.1 vs. uniprot
Match: A0A7S2RY64_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RY64_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 3.650e-20
Identity = 41/62 (66.13%), Postives = 50/62 (80.65%), Query Frame = 1
Query:    7 MPPFMAAWAGQQLRKINGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEVSSFATEFLQRK 192
            M P + AW  +Q+RK+NG DDLTL+ FCM+LTD  EIRQYL AYLGSTP+V+SFATEF+  K
Sbjct:  585 MTPALEAWCREQMRKLNGSDDLTLVAFCMTLTDTVEIRQYLTAYLGSTPQVNSFATEFINHK 646          
BLAST of mRNA_H-paniculata_contig18210.4430.1 vs. uniprot
Match: A0A7S1GGJ9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1GGJ9_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 6.080e-19
Identity = 39/62 (62.90%), Postives = 51/62 (82.26%), Query Frame = 1
Query:    7 MPPFMAAWAGQQLRKINGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEVSSFATEFLQRK 192
            M   M  W   Q++K+NG DDLTL+ FCM+LTD+ EIRQYL+AYLGSTP+V++FATEF++RK
Sbjct: 1016 MTSTMEKWCKDQMQKLNGSDDLTLVTFCMTLTDSDEIRQYLSAYLGSTPQVNNFATEFIKRK 1077          
BLAST of mRNA_H-paniculata_contig18210.4430.1 vs. uniprot
Match: A0A8K1C681_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C681_PYTOL)

HSP 1 Score: 88.2 bits (217), Expect = 8.290e-19
Identity = 41/61 (67.21%), Postives = 52/61 (85.25%), Query Frame = 1
Query:   16 FMAAWAGQQLRKINGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEVSSFATEFLQRKQS 198
            FM+ W  +QL+ ING DDLTL+E+C +L D  EIR+YLAAYLGSTP+VS+FATEF+QRK+S
Sbjct:  936 FMS-WCAKQLKSINGSDDLTLVEYCATLEDPGEIREYLAAYLGSTPKVSAFATEFIQRKKS 995          
BLAST of mRNA_H-paniculata_contig18210.4430.1 vs. uniprot
Match: A0A5D6Y3L8_9STRA (GYF domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3L8_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.130e-18
Identity = 40/65 (61.54%), Postives = 53/65 (81.54%), Query Frame = 1
Query:    1 SGMPPFMAAWAGQQLRKINGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEVSSFATEFLQRKQ 195
            +G+     AWA +Q + I+G+DDLTL+E+C+SL D  EIR+YLAAYLGSTP VS+FATEF+QRK+
Sbjct:  766 AGVSSEFMAWAAKQYQLISGRDDLTLVEYCVSLEDPGEIREYLAAYLGSTPRVSAFATEFIQRKK 830          
BLAST of mRNA_H-paniculata_contig18210.4430.1 vs. uniprot
Match: A0A7S1CZA9_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CZA9_CYCTE)

HSP 1 Score: 86.3 bits (212), Expect = 1.280e-18
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 1
Query:    7 MPPFMAAWAGQQLRKINGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEVSSFATEFLQRK 192
            M P + +W  +Q+ K+NG DDLTL+ FCM+LTD  EIRQYL AYLGSTP+V +FATEF+ ++
Sbjct:  228 MSPALESWCKEQMTKLNGSDDLTLVAFCMTLTDPVEIRQYLTAYLGSTPQVGNFATEFISKR 289          
BLAST of mRNA_H-paniculata_contig18210.4430.1 vs. uniprot
Match: A0A7S2EIP2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EIP2_TRICV)

HSP 1 Score: 83.2 bits (204), Expect = 1.670e-18
Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = 1
Query:    7 MPPFMAAWAGQQLRKINGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEVSSFATEFLQRK 192
            M P +  W  +Q+RKI+G +DLTL+ FCM+L+D  EIRQYL AYLG+TP+V++FA EF+ RK
Sbjct:   85 MSPALENWCKEQMRKISGSEDLTLVSFCMTLSDPVEIRQYLTAYLGTTPQVNNFAAEFINRK 146          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18210.4430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9W7_9PHAE6.270e-3086.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZDV0_9STRA1.990e-2672.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2D4BK92_PYTIN1.970e-2064.18GYF domain-containing protein (Fragment) n=1 Tax=P... [more]
A0A7S2LIW4_9STRA3.280e-2064.41Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S2RY64_9STRA3.650e-2066.13Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S1GGJ9_9STRA6.080e-1962.90Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A8K1C681_PYTOL8.290e-1967.21Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6Y3L8_9STRA1.130e-1861.54GYF domain-containing protein n=1 Tax=Pythium bras... [more]
A0A7S1CZA9_CYCTE1.280e-1859.68Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2EIP2_TRICV1.670e-1858.06Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18210contigH-paniculata_contig18210:4004..4641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue5.9e-15
Seed eggNOG ortholog36331.EPrPI00000019455
KEGG rclassRC00002
KEGG koko:K01520,ko:K18730
KEGG ReactionR02100,R11896
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
KEGG ModuleM00053
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Source PGD
EggNOG OGs1MC9U@121069,KOG1862@1,KOG1862@2759
EC3.6.1.23
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03400
Exons2
Model size206
Cds size198
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18210.4430.1prot_H-paniculata_contig18210.4430.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18210 4004..4635 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929415.9762695-CDS-H-paniculata_contig18210:4003..40511622929415.9762695-CDS-H-paniculata_contig18210:4003..4051Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18210 4004..4051 -
1691480851.9546137-CDS-H-paniculata_contig18210:4003..40511691480851.9546137-CDS-H-paniculata_contig18210:4003..4051Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18210 4004..4051 -
1622929415.9944515-CDS-H-paniculata_contig18210:4485..46351622929415.9944515-CDS-H-paniculata_contig18210:4485..4635Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18210 4486..4635 -
1691480851.9668908-CDS-H-paniculata_contig18210:4485..46351691480851.9668908-CDS-H-paniculata_contig18210:4485..4635Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18210 4486..4635 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929416.0073705-UTR-H-paniculata_contig18210:4635..46411622929416.0073705-UTR-H-paniculata_contig18210:4635..4641Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18210 4636..4641 -
1691480851.9767756-UTR-H-paniculata_contig18210:4635..46411691480851.9767756-UTR-H-paniculata_contig18210:4635..4641Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18210 4636..4641 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18210.4430.1

>prot_H-paniculata_contig18210.4430.1 ID=prot_H-paniculata_contig18210.4430.1|Name=mRNA_H-paniculata_contig18210.4430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MPPFMAAWAGQQLRKINGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPE
VSSFATEFLQRKQSLR
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mRNA from alignment at H-paniculata_contig18210:4004..4641-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18210.4430.1 ID=mRNA_H-paniculata_contig18210.4430.1|Name=mRNA_H-paniculata_contig18210.4430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=638bp|location=Sequence derived from alignment at H-paniculata_contig18210:4004..4641- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGGGATGCCCCCATTCATGGCAGCCTGGGCCGGCCAGCAGCTCCGCAA GATCAACGGGAAGGATGACCTGACGTTGCTGGAGTTTTGCATGTCCCTCA CGGACGCATCCGAGATCCGCCAATATCTCGCGGCATATCTGGGGTCCACC CCTGAGGTGTGCATGTACTTGGTAGCTGGTAATATGATTCGAGCAAGGTA TGTCAGCTGTCTTCTCATAACTTGTTTGTCTCAACTGCTTCAACTATCGG GTCTAAATTACGGAGTGCATACAACCACGGTCGTGTTCTGCGGTTCCGCA AGGAGTGAACGGGTCGAACAGTGAAAATTTTGTTTTCCAAGGCAAGTTTT CACAGTCAAACGATGTCTCTAGATGTCTCGTCAACTTGTTGATCTTGCTG AGGTATCGAGCGATTTGTGCGTGAAAGGCAGGAATAACACGCTTCCCCCC CCCCCAAAAGAGCAACACTACAAAGTTAGTTTGCGGTAATTCCCGCCTGC GCCAGTCAGCACGTAATAAACATCTGAGGTCATCGTTGTTGTATCTCGCT CTTTTTCTATTATTTCGTGATTCGTTTTTTTGTGCTGGAGGTGTCCTCTT TCGCCACTGAGTTCCTCCAGCGTAAGCAATCCCTGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig18210:4004..4641-

>mRNA_H-paniculata_contig18210.4430.1 ID=mRNA_H-paniculata_contig18210.4430.1|Name=mRNA_H-paniculata_contig18210.4430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig18210:4004..4641- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCCCATTCATGGCAGCCTGGGCCGGCCAGCAGCTCCGCAAGATCAA
CGGGAAGGATGACCTGACGTTGCTGGAGTTTTGCATGTCCCTCACGGACG
CATCCGAGATCCGCCAATATCTCGCGGCATATCTGGGGTCCACCCCTGAG
ATGCCCCCATTCATGGCAGCCTGGGCCGGCCAGCAGCTCCGCAAGATCAA
CGGGAAGGATGACCTGACGTTGCTGGAGTTTTGCATGTCCCTCACGGACG
CATCCGAGATCCGCCAATATCTCGCGGCATATCTGGGGTCCACCCCTGAG
GTGTCCTCTTTCGCCACTGAGTTCCTCCAGCGTAAGCAATCCCTGCGGGT
GTCCTCTTTCGCCACTGAGTTCCTCCAGCGTAAGCAATCCCTGCGG
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