mRNA_H-paniculata_contig18210.4431.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18210.4431.1
Unique NamemRNA_H-paniculata_contig18210.4431.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18210.4431.1 vs. uniprot
Match: A0A6H5L9W7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9W7_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 9.400e-20
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = -3 
Query:  463 SGMPPFMAAWAGQQLRKINGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEVCMY 630
            SGM P MA+WA QQL+K++GKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEV  +
Sbjct:  556 SGMSPAMASWASQQLKKMSGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEVSSF 611
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BLAST of mRNA_H-paniculata_contig18210.4431.1 vs. uniprot
Match: A0A835ZDV0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDV0_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.060e-16
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = -3 
Query:  463 GMPPFMAAWAGQQLRKINGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEVCMY 627
            GMPP MAAWA  +L+K+ G +D+TLL+FCMS TDASE+R+ LAAYLGSTP+V  +
Sbjct:    2 GMPPDMAAWAQAELKKLGGGEDITLLDFCMSSTDASEVREVLAAYLGSTPQVSSF 56
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BLAST of mRNA_H-paniculata_contig18210.4431.1 vs. uniprot
Match: A0A7S2LIW4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LIW4_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.270e-13
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = -3 
Query:  472 MPPFMAAWAGQQLRKINGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEV 624
            M P M  W   Q++K+NG DDLTL+ FCM+LTD+ EIRQYL+AYLGSTP+V
Sbjct:  108 MTPTMEKWCKDQMQKLNGSDDLTLVTFCMTLTDSDEIRQYLSAYLGSTPQV 158
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BLAST of mRNA_H-paniculata_contig18210.4431.1 vs. uniprot
Match: A0A7S2RY64_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RY64_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 7.660e-13
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = -3 
Query:  472 MPPFMAAWAGQQLRKINGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEV 624
            M P + AW  +Q+RK+NG DDLTL+ FCM+LTD  EIRQYL AYLGSTP+V
Sbjct:  585 MTPALEAWCREQMRKLNGSDDLTLVAFCMTLTDTVEIRQYLTAYLGSTPQV 635
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BLAST of mRNA_H-paniculata_contig18210.4431.1 vs. uniprot
Match: A0A7S1CZA9_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CZA9_CYCTE)

HSP 1 Score: 73.2 bits (178), Expect = 7.850e-12
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = -3 
Query:  472 MPPFMAAWAGQQLRKINGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEV 624
            M P + +W  +Q+ K+NG DDLTL+ FCM+LTD  EIRQYL AYLGSTP+V
Sbjct:  228 MSPALESWCKEQMTKLNGSDDLTLVAFCMTLTDPVEIRQYLTAYLGSTPQV 278
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BLAST of mRNA_H-paniculata_contig18210.4431.1 vs. uniprot
Match: A0A7S0APC6_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0APC6_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 8.590e-12
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = -3 
Query:  472 MPPFMAAWAGQQLRKINGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEV 624
            M P + AW  +Q++KI+G +DLTL+ FCM+L D  EI+QYL AYLGSTP+V
Sbjct:   72 MSPQLEAWCREQMKKISGSEDLTLVSFCMTLNDPGEIKQYLTAYLGSTPQV 122
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BLAST of mRNA_H-paniculata_contig18210.4431.1 vs. uniprot
Match: A0A7S1CYS2_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CYS2_CYCTE)

HSP 1 Score: 73.2 bits (178), Expect = 1.580e-11
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = -3 
Query:  472 MPPFMAAWAGQQLRKINGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEV 624
            M P + +W  +Q+ K+NG DDLTL+ FCM+LTD  EIRQYL AYLGSTP+V
Sbjct:  539 MSPALESWCKEQMTKLNGSDDLTLVAFCMTLTDPVEIRQYLTAYLGSTPQV 589
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BLAST of mRNA_H-paniculata_contig18210.4431.1 vs. uniprot
Match: A0A7S1H1V4_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H1V4_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.990e-11
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = -3 
Query:  472 SGMPPFMAAWAGQQLRKINGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEV 630
            + M   + +W   Q+RK+NG DDLTL+ FCM+L D +EI+QYL AYLGSTP+V
Sbjct:  117 ASMSTTLESWCKDQMRKLNGSDDLTLVSFCMTLNDPAEIKQYLTAYLGSTPQV 169
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BLAST of mRNA_H-paniculata_contig18210.4431.1 vs. uniprot
Match: A0A7S2EIP2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EIP2_TRICV)

HSP 1 Score: 69.3 bits (168), Expect = 2.920e-11
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = -3 
Query:  472 MPPFMAAWAGQQLRKINGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEV 624
            M P +  W  +Q+RKI+G +DLTL+ FCM+L+D  EIRQYL AYLG+TP+V
Sbjct:   85 MSPALENWCKEQMRKISGSEDLTLVSFCMTLSDPVEIRQYLTAYLGTTPQV 135
[Close]
BLAST of mRNA_H-paniculata_contig18210.4431.1 vs. uniprot
Match: A0A7S1GGJ9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1GGJ9_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.250e-11
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = -3 
Query:  472 MPPFMAAWAGQQLRKINGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEV 624
            M   M  W   Q++K+NG DDLTL+ FCM+LTD+ EIRQYL+AYLGSTP+V
Sbjct: 1016 MTSTMEKWCKDQMQKLNGSDDLTLVTFCMTLTDSDEIRQYLSAYLGSTPQV 1066
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18210.4431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9W7_9PHAE9.400e-2082.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZDV0_9STRA3.060e-1665.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2LIW4_9STRA1.270e-1364.71Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S2RY64_9STRA7.660e-1366.67Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S1CZA9_CYCTE7.850e-1262.75Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S0APC6_9STRA8.590e-1258.82Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S1CYS2_CYCTE1.580e-1162.75Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S1H1V4_9STRA1.990e-1156.60Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S2EIP2_TRICV2.920e-1158.82Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1GGJ9_9STRA3.250e-1162.75Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18210contigH-paniculata_contig18210:4012..4643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size634
Cds size378
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929415.9205163-CDS-H-paniculata_contig18210:4011..43891622929415.9205163-CDS-H-paniculata_contig18210:4011..4389Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18210 4012..4389 +
1691480851.9312804-CDS-H-paniculata_contig18210:4011..43891691480851.9312804-CDS-H-paniculata_contig18210:4011..4389Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18210 4012..4389 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929415.9328852-UTR-H-paniculata_contig18210:4389..46431622929415.9328852-UTR-H-paniculata_contig18210:4389..4643Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18210 4390..4643 +
1691480851.9450946-UTR-H-paniculata_contig18210:4389..46431691480851.9450946-UTR-H-paniculata_contig18210:4389..4643Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18210 4390..4643 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18210.4431.1prot_H-paniculata_contig18210.4431.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18210 4012..4389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18210.4431.1

>prot_H-paniculata_contig18210.4431.1 ID=prot_H-paniculata_contig18210.4431.1|Name=mRNA_H-paniculata_contig18210.4431.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
IAYAGGTQWRKRTPPAQKNESRNNRKRARYNNDDLRCLLRADWRRRELPQ
TNFVVLLFWGGGKRVIPAFHAQIARYLSKINKLTRHLETSFDCENLPWKT
KFSLFDPFTPCGTAEHDRGCMHSVI*
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mRNA from alignment at H-paniculata_contig18210:4012..4643+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18210.4431.1 ID=mRNA_H-paniculata_contig18210.4431.1|Name=mRNA_H-paniculata_contig18210.4431.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=632bp|location=Sequence derived from alignment at H-paniculata_contig18210:4012..4643+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGCTTACGCTGGAGGAACTCAGTGGCGAAAGAGGACACCTCCAGCACA
AAAAAACGAATCACGAAATAATAGAAAAAGAGCGAGATACAACAACGATG
ACCTCAGATGTTTATTACGTGCTGACTGGCGCAGGCGGGAATTACCGCAA
ACTAACTTTGTAGTGTTGCTCTTTTGGGGGGGGGGGAAGCGTGTTATTCC
TGCCTTTCACGCACAAATCGCTCGATACCTCAGCAAGATCAACAAGTTGA
CGAGACATCTAGAGACATCGTTTGACTGTGAAAACTTGCCTTGGAAAACA
AAATTTTCACTGTTCGACCCGTTCACTCCTTGCGGAACCGCAGAACACGA
CCGTGGTTGTATGCACTCCGTAATTTAGACCCGATAGTTGAAGCAGTTGA
GACAAACAAGTTATGAGAAGACAGCTGACATACCTTGCTCGAATCATATT
ACCAGCTACCAAGTACATGCACACCTCAGGGGTGGACCCCAGATATGCCG
CGAGATATTGGCGGATCTCGGATGCGTCCGTGAGGGACATGCAAAACTCC
AGCAACGTCAGGTCATCCTTCCCGTTGATCTTGCGGAGCTGCTGGCCGGC
CCAGGCTGCCATGAATGGGGGCATCCCCGACC
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Coding sequence (CDS) from alignment at H-paniculata_contig18210:4012..4643+

>mRNA_H-paniculata_contig18210.4431.1 ID=mRNA_H-paniculata_contig18210.4431.1|Name=mRNA_H-paniculata_contig18210.4431.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig18210:4012..4643+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGCTTACGCTGGAGGAACTCAGTGGCGAAAGAGGACACCTCCAGCACA
AAAAAACGAATCACGAAATAATAGAAAAAGAGCGAGATACAACAACGATG
ACCTCAGATGTTTATTACGTGCTGACTGGCGCAGGCGGGAATTACCGCAA
ACTAACTTTGTAGTGTTGCTCTTTTGGGGGGGGGGGAAGCGTGTTATTCC
TGCCTTTCACGCACAAATCGCTCGATACCTCAGCAAGATCAACAAGTTGA
CGAGACATCTAGAGACATCGTTTGACTGTGAAAACTTGCCTTGGAAAACA
AAATTTTCACTGTTCGACCCGTTCACTCCTTGCGGAACCGCAGAACACGA
CCGTGGTTGTATGCACTCCGTAATTTAGATTGCTTACGCTGGAGGAACTC
AGTGGCGAAAGAGGACACCTCCAGCACAAAAAAACGAATCACGAAATAAT
AGAAAAAGAGCGAGATACAACAACGATGACCTCAGATGTTTATTACGTGC
TGACTGGCGCAGGCGGGAATTACCGCAAACTAACTTTGTAGTGTTGCTCT
TTTGGGGGGGGGGGAAGCGTGTTATTCCTGCCTTTCACGCACAAATCGCT
CGATACCTCAGCAAGATCAACAAGTTGACGAGACATCTAGAGACATCGTT
TGACTGTGAAAACTTGCCTTGGAAAACAAAATTTTCACTGTTCGACCCGT
TCACTCCTTGCGGAACCGCAGAACACGACCGTGGTTGTATGCACTCCGTA
ATTTAG
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