mRNA_H-paniculata_contig182.4425.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig182.4425.1
Unique NamemRNA_H-paniculata_contig182.4425.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig182.4425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig182contigH-paniculata_contig182:35381..36875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size590
Cds size588
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig182.4425.1prot_H-paniculata_contig182.4425.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig182 35381..36874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929414.028426-CDS-H-paniculata_contig182:35380..354371622929414.028426-CDS-H-paniculata_contig182:35380..35437Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig182 35381..35437 +
1691480850.964661-CDS-H-paniculata_contig182:35380..354371691480850.964661-CDS-H-paniculata_contig182:35380..35437Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig182 35381..35437 +
1622929414.0439165-CDS-H-paniculata_contig182:36301..366171622929414.0439165-CDS-H-paniculata_contig182:36301..36617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig182 36302..36617 +
1691480850.9740827-CDS-H-paniculata_contig182:36301..366171691480850.9740827-CDS-H-paniculata_contig182:36301..36617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig182 36302..36617 +
1622929414.0634894-CDS-H-paniculata_contig182:36659..368741622929414.0634894-CDS-H-paniculata_contig182:36659..36874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig182 36660..36874 +
1691480850.98314-CDS-H-paniculata_contig182:36659..368741691480850.98314-CDS-H-paniculata_contig182:36659..36874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig182 36660..36874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig182.4425.1

>prot_H-paniculata_contig182.4425.1 ID=prot_H-paniculata_contig182.4425.1|Name=mRNA_H-paniculata_contig182.4425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=196bp
LDIESQDKLKESHLEAPNQVKVIFIGHEHAEKSEVIEGLQAGGKGPNLAL
VPAAAPVTGIATPARQGTPRVGNTVSSIASSPVCGIGTSKPSKLSYAETA
RGWSSARPSSSRAPVTPGSLSSNKTPPANSAATQGGGSFRGNSPGKSNAV
GHGGRSAVAVGGAKKIKDEVEMKIKTWTPTVKLRKTLPEGWEKEGG
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mRNA from alignment at H-paniculata_contig182:35381..36875+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig182.4425.1 ID=mRNA_H-paniculata_contig182.4425.1|Name=mRNA_H-paniculata_contig182.4425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1495bp|location=Sequence derived from alignment at H-paniculata_contig182:35381..36875+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGACATCGAGTCCCAGGATAAACTCAAGGAGAGTCATCTCGAAGCACC
GAACCAGGTACGCTATACACCTACCTATATCCTCTTGTGTGCTGTACCTT
ATTTTTTTGTATCGGACATTTTACGGGAATTTGTTAGAAAGGAAGGTCAT
GATGACTATTGTCATGACCGCATTGTATAGTAAATTATGTTATTCGTCAT
TTTTTATCACCGTGGGTATGTGCGAGGTGCATGATGCCTTTCGTCACAGT
GGTGTGCCGGAAGAAGTCAAAGCCGTTAAGGCTAGGGTAGGCTAGGCTAA
GCTAGGCTATAATGCGGTGATCTCTGGTGAGGCAAAAGGGGGTACAATCA
CTTGTCTCAAGTTTCGATCTTGGCTCTGCGACACCAACTTACCGCGAGCA
GCTTTTTCCTTTCGTCCTTGGATTTCGGACAAGAATGACTTGAACATACG
TACGTACGTGCAAGATGGAAACCCCACGCCACAGACAACATATGATGGTC
GCCCATGTTATCGGCCTTGCCCTCTCCAACTTTAGGCTTGCTTACTCTGT
GTCGTAGATGAAGATAGTTCAGATCACAGAGGTATTTCAACATCTCCAAT
TATTTCTTGGATATTTTTGGAGAGAAACCCGCGGGAAAGTTCGAGGAAAA
TTCTGGTGCGCGCGCGGTATTAAAATAAATACTCGAATGAAAAAAGGGCC
ATATTTCTCCAAAATTATTAGCCCAACCCTTGAGCGGCAAATTAATCCCG
CGGAATAGCTCGTATGAGCCTTATCATATTTTAGCTGTCCGTCGATATCA
ACAGTGTTCAAGTGAGCATCCGTAGAGGGTGAGGTGTGAGATACGGGTCT
GCAAAACATAGCAGCTTTACTTGTAAGACAGAGGAGCCATAACCACACCG
GATTATCGCCCGGCAACACAGGTGAAGGTGATATTCATCGGGCACGAACA
TGCGGAAAAGTCCGAGGTGATCGAGGGACTGCAGGCCGGGGGGAAAGGAC
CAAATCTGGCGTTAGTCCCAGCAGCAGCACCGGTGACAGGGATAGCGACG
CCTGCTCGACAAGGAACACCTCGCGTCGGCAATACAGTAAGCAGTATCGC
GTCCTCACCTGTCTGCGGCATCGGCACCTCCAAGCCCAGCAAGCTTTCTT
ACGCCGAAACAGCTCGCGGGTGGAGCTCGGCAAGGCCGTCTTCCAGCAGA
GCTCCCGTTACCCCAGGCTCATTGTCCAGCAACAAGAGCCAGACAAGATG
GTCGTCCAGCGGTGGGTACTCGGGAGCAGCTCCTCCCGCGAATTCTGCCG
CTACCCAAGGTGGTGGTAGCTTCAGGGGGAACAGCCCGGGCAAATCGAAT
GCTGTTGGTCACGGCGGCAGGTCGGCTGTTGCTGTAGGTGGTGCCAAGAA
GATTAAGGATGAGGTGGAAATGAAGATCAAGACGTGGACGCCTACGGTGA
AGTTGAGGAAAACGTTGCCGGAGGGTTGGGAGAAGGAAGGCGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig182:35381..36875+

>mRNA_H-paniculata_contig182.4425.1 ID=mRNA_H-paniculata_contig182.4425.1|Name=mRNA_H-paniculata_contig182.4425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at H-paniculata_contig182:35381..36875+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGACATCGAGTCCCAGGATAAACTCAAGGAGAGTCATCTCGAAGCACC
GAACCAGCTGGACATCGAGTCCCAGGATAAACTCAAGGAGAGTCATCTCG
AAGCACCGAACCAGGTGAAGGTGATATTCATCGGGCACGAACATGCGGAA
AAGTCCGAGGTGATCGAGGGACTGCAGGCCGGGGGGAAAGGACCAAATCT
GGCGTTAGTCCCAGCAGCAGCACCGGTGACAGGGATAGCGACGCCTGCTC
GACAAGGAACACCTCGCGTCGGCAATACAGTAAGCAGTATCGCGTCCTCA
CCTGTCTGCGGCATCGGCACCTCCAAGCCCAGCAAGCTTTCTTACGCCGA
AACAGCTCGCGGGTGGAGCTCGGCAAGGCCGTCTTCCAGCAGAGCTCCCG
TTACCCCAGGCTCATTGTCCAGCAACAAGAGTGAAGGTGATATTCATCGG
GCACGAACATGCGGAAAAGTCCGAGGTGATCGAGGGACTGCAGGCCGGGG
GGAAAGGACCAAATCTGGCGTTAGTCCCAGCAGCAGCACCGGTGACAGGG
ATAGCGACGCCTGCTCGACAAGGAACACCTCGCGTCGGCAATACAGTAAG
CAGTATCGCGTCCTCACCTGTCTGCGGCATCGGCACCTCCAAGCCCAGCA
AGCTTTCTTACGCCGAAACAGCTCGCGGGTGGAGCTCGGCAAGGCCGTCT
TCCAGCAGAGCTCCCGTTACCCCAGGCTCATTGTCCAGCAACAAGACTCC
TCCCGCGAATTCTGCCGCTACCCAAGGTGGTGGTAGCTTCAGGGGGAACA
GCCCGGGCAAATCGAATGCTGTTGGTCACGGCGGCAGGTCGGCTGTTGCT
GTAGGTGGTGCCAAGAAGATTAAGGATGAGGTGGAAATGAAGATCAAGAC
GTGGACGCCTACGGTGAAGTTGAGGAAAACGTTGCCGGAGGGTTGGGAGA
AGGAAGGCGGGCTCCTCCCGCGAATTCTGCCGCTACCCAAGGTGGTGGTA
GCTTCAGGGGGAACAGCCCGGGCAAATCGAATGCTGTTGGTCACGGCGGC
AGGTCGGCTGTTGCTGTAGGTGGTGCCAAGAAGATTAAGGATGAGGTGGA
AATGAAGATCAAGACGTGGACGCCTACGGTGAAGTTGAGGAAAACGTTGC
CGGAGGGTTGGGAGAAGGAAGGCGGG
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