mRNA_H-paniculata_contig18192.4422.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18192.4422.1
Unique NamemRNA_H-paniculata_contig18192.4422.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18192.4422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18192contigH-paniculata_contig18192:1615..3172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size262
Cds size261
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929413.9167166-CDS-H-paniculata_contig18192:1614..16771622929413.9167166-CDS-H-paniculata_contig18192:1614..1677Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18192 1615..1677 +
1691480850.937825-CDS-H-paniculata_contig18192:1614..16771691480850.937825-CDS-H-paniculata_contig18192:1614..1677Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18192 1615..1677 +
1622929413.9338944-CDS-H-paniculata_contig18192:2974..31721622929413.9338944-CDS-H-paniculata_contig18192:2974..3172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18192 2975..3172 +
1691480850.94737-CDS-H-paniculata_contig18192:2974..31721691480850.94737-CDS-H-paniculata_contig18192:2974..3172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18192 2975..3172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18192.4422.1prot_H-paniculata_contig18192.4422.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18192 1615..3172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18192.4422.1

>prot_H-paniculata_contig18192.4422.1 ID=prot_H-paniculata_contig18192.4422.1|Name=mRNA_H-paniculata_contig18192.4422.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
MQPVQRWIDFLLSQPWPPLLTENHDEDIHRGCTSRGVRHAATGTASAGHK
GHVGVLEHRELSFNHHLRLHSDPSPEEGLDLSLEQLG
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mRNA from alignment at H-paniculata_contig18192:1615..3172+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18192.4422.1 ID=mRNA_H-paniculata_contig18192.4422.1|Name=mRNA_H-paniculata_contig18192.4422.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1558bp|location=Sequence derived from alignment at H-paniculata_contig18192:1615..3172+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCCTGTTCAGAGATGGATTGATTTCCTGCTATCACAGCCCTGGCC
CCCACTGCTAACGGTTAGTTGCGAATGGTATTTCAAACGTTTAGTTGATG
GTGTAGTGCTTGTATGTGTTTATGTTATCGACCCAAAAGGCTGTTGCATG
TAAACCGCCCTGTGTTGCGATCCGAGGCCCCTTTCGGAAAAACCTCTCTC
TCTGTTTGCAAACAGAATTTACATGGTGCGTAGTAATTCGCCGCGTCCCA
GCACCGGCTCATACCCGGCAGAAGTCCGTGTGCGTCACAGTGTGTTGGTG
ACTCGCGTGGGCGAGTTACAACTTTTTGGGGATTCGAGCGCGCCGGAGAA
AAATCTAATATTATACCCCAAGTTTGACAGCGAACCAAACGTTGATTTGT
TCCATAAAATGCCCCGTGCGTTCTGTCTCTGCGTTATCCTTGTAGGACAT
GAGCGTGGACCCTGGAATGAAGTCCTTCTACGACGCGCAGCAAAGAAACA
AGAAGGAGCTCGAGGAAGAGGTGCAAGTGGCCACCGGAGTGTTCAAGCAG
AAGATCAGCGAACGTGCTGCGCCGGGTTTGGCCGCTGCAGCAACCGCCGC
CGCATCAACGCAACGCCGCCGTCAGCAGGAGGAGCTTCCGCTGCTTCGAC
ACCATCTCGTCAGGCTGGGAGCGGTGCTGCATTACAGGGTACGCTGACGG
CGGCAGACCCAGGAGTTTCGGGGCAAGGTAAAGGTGGGTCGTGACGAGGG
TTGGGTGGTTAGGTAGTGCGTTGTGTACTTCCTTGTTGCATATGGGCGGT
TACGAGTTGGGTGTGTCTTATTTTTCGTCCGTTTCATGTGGTTCTATGAT
AGCAATGCCCAGCTGGAGTTTGCTTGGCATCTGTATCGTGACCAAATGTT
AACGAAGACGCCGTTAAACGAAAACCTCTGCAGTAGGACCATCGCGAACG
ACGCGCAGAACAGTGGCCCCGCCCGCGGAAGATGGCAAGATGGCGAGCGC
CAGGTACGAAACACTTGGCTTTGTACTTGCATTGCCAGAGTGGGCAAAAG
AGAGAATGTACGACGGATGGATATACATTGATGATGCCGTTTTGGTTTTG
GCAAGTTGTAGTATCGGTATTGGTGTTGATGTGACATTTCGCGAAGGTGT
GTGTGACTGGCTACTACTGTATGTACCAATATGTCCATGGAAGTATGCGT
GTAATAAACAAACTATAGATTGAACGACGACACCACCTATATACGTCTAT
ATTGACGTGTCATTACCGTCATTAATGTTCAAATATGTAACGTCTACTTG
TCGTAGTTCTGCATGATGTACGCAAGCCTAACAGTTCCGCGCGTGACGTC
TGTTCGCCAGGAAAATCATGACGAAGATATTCACCGCGGATGTACTTCAA
GAGGGGTTCGACATGCAGCAACAGGTACTGCATCCGCCGGGCACAAAGGT
CATGTTGGCGTTCTTGAACATCGCGAGCTGTCCTTCAATCACCACCTACG
GCTCCACTCTGACCCCAGTCCTGAAGAAGGCCTTGATCTTTCTCTCGAAC
AACTTGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig18192:1615..3172+

>mRNA_H-paniculata_contig18192.4422.1 ID=mRNA_H-paniculata_contig18192.4422.1|Name=mRNA_H-paniculata_contig18192.4422.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig18192:1615..3172+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCCTGTTCAGAGATGGATTGATTTCCTGCTATCACAGCCCTGGCC
CCCACTGCTAACGATGCAGCCTGTTCAGAGATGGATTGATTTCCTGCTAT
CACAGCCCTGGCCCCCACTGCTAACGGAAAATCATGACGAAGATATTCAC
CGCGGATGTACTTCAAGAGGGGTTCGACATGCAGCAACAGGTACTGCATC
CGCCGGGCACAAAGGTCATGTTGGCGTTCTTGAACATCGCGAGCTGTCCT
TCAATCACCACCTACGGCTCCACTCTGACCCCAGTCCTGAAGAAGGCCTT
GATCTTTCTCTCGAACAACTTGGAGAAAATCATGACGAAGATATTCACCG
CGGATGTACTTCAAGAGGGGTTCGACATGCAGCAACAGGTACTGCATCCG
CCGGGCACAAAGGTCATGTTGGCGTTCTTGAACATCGCGAGCTGTCCTTC
AATCACCACCTACGGCTCCACTCTGACCCCAGTCCTGAAGAAGGCCTTGA
TCTTTCTCTCGAACAACTTGGA
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