mRNA_H-paniculata_contig18181.4416.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig18181.4416.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE) HSP 1 Score: 150 bits (378), Expect = 6.870e-41 Identity = 89/171 (52.05%), Postives = 105/171 (61.40%), Query Frame = 1
Query: 1 SNEVVLLNKSVYGLKQASRQ*YPLLVSSLQDFGSEQRLVDPCVLRLTVADLVVAMVVIHVDDIQIAGSKDVASVVVGSLND-------------------RDREGDTLEISQTQCIRNVLVRFNVTKTSLIPAPPCVELTEENEEGTLVDVPFQEVIGSLMWITNQTRLDI 456
S +VV LNKS+YGLKQASR Y LVS L+ G EQ + DPCVLR + D VV MV IHVDDI AG+ +A VVV +L D RDRE T+E+SQ IR+VL RFNV +TS IPA P + E+ DVPF+EV+GSLMWI NQTR DI
Sbjct: 120 SGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTTSLAEVVVAALGDFLPTKSLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDI 290
BLAST of mRNA_H-paniculata_contig18181.4416.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE) HSP 1 Score: 152 bits (384), Expect = 6.730e-40 Identity = 90/171 (52.63%), Postives = 106/171 (61.99%), Query Frame = 1
Query: 1 SNEVVLLNKSVYGLKQASRQ*YPLLVSSLQDFGSEQRLVDPCVLRLTVADLVVAMVVIHVDDIQIAGSKDVASVVVGSLND-------------------RDREGDTLEISQTQCIRNVLVRFNVTKTSLIPAPPCVELTEENEEGTLVDVPFQEVIGSLMWITNQTRLDI 456
S +VV LNKS+YGLKQASR Y LVS L+ G EQ + DPCVLR + D VV MV IHVDDI AG+K +A VVV +L D RDRE T+E+SQ IR+VL RFNV +TS IPA P + E+ DVPF+EV+GSLMWI NQTR DI
Sbjct: 586 SGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDI 756
BLAST of mRNA_H-paniculata_contig18181.4416.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 152 bits (384), Expect = 6.990e-40 Identity = 90/171 (52.63%), Postives = 106/171 (61.99%), Query Frame = 1
Query: 1 SNEVVLLNKSVYGLKQASRQ*YPLLVSSLQDFGSEQRLVDPCVLRLTVADLVVAMVVIHVDDIQIAGSKDVASVVVGSLND-------------------RDREGDTLEISQTQCIRNVLVRFNVTKTSLIPAPPCVELTEENEEGTLVDVPFQEVIGSLMWITNQTRLDI 456
S +VV LNKS+YGLKQASR Y LVS L+ G EQ + DPCVLR + D VV MV IHVDDI AG+K +A VVV +L D RDRE T+E+SQ IR+VL RFNV +TS IPA P + E+ DVPF+EV+GSLMWI NQTR DI
Sbjct: 853 SGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDI 1023
BLAST of mRNA_H-paniculata_contig18181.4416.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE) HSP 1 Score: 147 bits (371), Expect = 2.160e-38 Identity = 92/173 (53.18%), Postives = 105/173 (60.69%), Query Frame = 1
Query: 1 SNEVVLLNKSVYGLKQASRQ*YPLLVSSLQDFGSEQRLVDPCVLRLTVADLVVAMVVIHVDDIQIAGSKDVASVVVGSLND-------------------RDREGDTLEISQTQCIRNVLVRFNVTKTSLIPAPPCV--ELTEENEEGTLVDVPFQEVIGSLMWITNQTRLDI 456
S +VV LNKS+YGLKQASR Y LVS L+ G EQ L DPCVLR + D V+ MV IHVDDI AGSK +A VV +L D RDRE T+EISQ IR+VL RFNV +TS IPA P V ENEE DVPF+EV+G MWI +QTR DI
Sbjct: 305 SGKVVRLNKSLYGLKQASRTFYMRLVSDLKRIGFEQSLSDPCVLRFMMGDEVMGMVAIHVDDILYAGSKSLAETVVAALGDSLPTKNLGEVKFFLGCAFRRDREAGTIEISQESYIRSVLERFNVVRTSSIPASPTVVNRSVMENEEAG--DVPFREVVGCAMWIASQTRPDI 475
BLAST of mRNA_H-paniculata_contig18181.4416.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 145 bits (367), Expect = 1.370e-37 Identity = 88/171 (51.46%), Postives = 105/171 (61.40%), Query Frame = 1
Query: 1 SNEVVLLNKSVYGLKQASRQ*YPLLVSSLQDFGSEQRLVDPCVLRLTVADLVVAMVVIHVDDIQIAGSKDVASVVVGSLND-------------------RDREGDTLEISQTQCIRNVLVRFNVTKTSLIPAPPCVELTEENEEGTLVDVPFQEVIGSLMWITNQTRLDI 456
S +VV LNKS+YGLKQASR Y LVS L+ G EQ + DPCVLR + D VV MV IHVDDI AG+K +A VVV +L D RDR+ T+EISQ IR+VL RFN+ +TS IPA + EE DVPF+EV+GSLMWI +QTR DI
Sbjct: 1027 SEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIPASLNNDDRSLMEEEGAGDVPFREVVGSLMWIASQTRADI 1197
BLAST of mRNA_H-paniculata_contig18181.4416.1 vs. uniprot
Match: A0A6H5KS88_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS88_9PHAE) HSP 1 Score: 136 bits (343), Expect = 1.770e-37 Identity = 80/168 (47.62%), Postives = 99/168 (58.93%), Query Frame = 1
Query: 1 SNEVVLLNKSVYGLKQASRQ*YPLLVSSLQDFGSEQRLVDPCVLRLTVADLVVAMVVIHVDDIQIAGSKDVASVVVGSLND-------------------RDREGDTLEISQTQCIRNVLVRFNVTKTSLIPAPPCVELTEENEEGTLVDVPFQEVIGSLMWITNQTR 447
S ++V LNKS+YGLKQASR Y LVS L G EQ L DPCVLR + D V+ ++ IHVDDI AG+K +A V+ +L D RDRE T+EISQ I +VL RFN+ +TS IPA P + E+ DVPF+EV+G LMWI N TR
Sbjct: 2 SGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIAEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIWSVLERFNICRTSSIPASPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTR 169
BLAST of mRNA_H-paniculata_contig18181.4416.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE) HSP 1 Score: 140 bits (354), Expect = 1.880e-37 Identity = 83/168 (49.40%), Postives = 100/168 (59.52%), Query Frame = 1
Query: 1 SNEVVLLNKSVYGLKQASRQ*YPLLVSSLQDFGSEQRLVDPCVLRLTVADLVVAMVVIHVDDIQIAGSKDVASVVVGSLND-------------------RDREGDTLEISQTQCIRNVLVRFNVTKTSLIPAPPCVELTEENEEGTLVDVPFQEVIGSLMWITNQTR 447
S ++V LNKS+YGLKQASR Y LVS L G EQ L DPCVLR + D V+ + IHVDDI AG+K +A V+V +L D RDRE T+EISQ IRNVL RFN+ +TS IPA P + E+ DVPF+EV+G LMWI N TR
Sbjct: 11 SGKIVRLNKSLYGLKQASRTSYKRLVSDLLWIGFEQSLSDPCVLRFMMGDEVMGIFAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCEISRDREAGTIEISQESYIRNVLERFNICRTSSIPASPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTR 178
BLAST of mRNA_H-paniculata_contig18181.4416.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE) HSP 1 Score: 145 bits (365), Expect = 2.510e-37 Identity = 87/171 (50.88%), Postives = 105/171 (61.40%), Query Frame = 1
Query: 1 SNEVVLLNKSVYGLKQASRQ*YPLLVSSLQDFGSEQRLVDPCVLRLTVADLVVAMVVIHVDDIQIAGSKDVASVVVGSLND-------------------RDREGDTLEISQTQCIRNVLVRFNVTKTSLIPAPPCVELTEENEEGTLVDVPFQEVIGSLMWITNQTRLDI 456
S +VV LNKS+YGL+QASR Y LVS L+ G EQ + DPCVLR + D VV MV IHVDDI AG+K +A VVV +L D RDR+ T+EISQ IR+VL RFN+ +TS IPA + EE DVPF+EV+GSLMWI +QTR DI
Sbjct: 155 SEKVVRLNKSLYGLRQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIPASLYNDDRSLMEEEGAGDVPFREVVGSLMWIASQTRADI 325
BLAST of mRNA_H-paniculata_contig18181.4416.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE) HSP 1 Score: 144 bits (364), Expect = 3.490e-37 Identity = 86/171 (50.29%), Postives = 103/171 (60.23%), Query Frame = 1
Query: 1 SNEVVLLNKSVYGLKQASRQ*YPLLVSSLQDFGSEQRLVDPCVLRLTVADLVVAMVVIHVDDIQIAGSKDVASVVVGSLND-------------------RDREGDTLEISQTQCIRNVLVRFNVTKTSLIPAPPCVELTEENEEGTLVDVPFQEVIGSLMWITNQTRLDI 456
S +VV LNKS+YGLKQASR Y LVS L+ G EQ L DPCVLR + D V+ MV IHVDDI AG+K +A VVV +L D RDRE T+EISQ IR+VL RF + +TS IPA P + E+ DVPF+EV+G LMW+ N TR DI
Sbjct: 918 SGKVVRLNKSLYGLKQASRTFYKRLVSDLKRIGFEQSLSDPCVLRFMMGDEVLGMVAIHVDDILYAGTKSLAKVVVEALGDSLPTKNLGEVKFFLGCAFIRDREAGTIEISQESYIRSVLERFKICRTSSIPASPANDNRSVMEDEEAGDVPFREVVGCLMWVANGTRPDI 1088
BLAST of mRNA_H-paniculata_contig18181.4416.1 vs. uniprot
Match: A0A6H5JNA7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNA7_9PHAE) HSP 1 Score: 140 bits (353), Expect = 1.380e-36 Identity = 80/171 (46.78%), Postives = 102/171 (59.65%), Query Frame = 1
Query: 1 SNEVVLLNKSVYGLKQASRQ*YPLLVSSLQDFGSEQRLVDPCVLRLTVADLVVAMVVIHVDDIQIAGSKDVASVVVGSLND-------------------RDREGDTLEISQTQCIRNVLVRFNVTKTSLIPAPPCVELTEENEEGTLVDVPFQEVIGSLMWITNQTRLDI 456
S + V L+KS+YGL+QASR + LVS L+ G EQ L DPCVLR + D ++ M+ IHVDDI G + +A+ VV +L D RDRE T+E+SQ C+R VL RFN+ +TS IPA P + EE D+PF+EV GSLMWI NQTR DI
Sbjct: 199 SGKAVRLDKSLYGLRQASRTFHKRLVSDLKTIGFEQSLSDPCVLRFIMGDEMMDMIAIHVDDILYGGIESLATTVVQALGDSFRTKNLGEVKFFLGCAFNRDREARTIEMSQVSCVRRVLERFNICRTSPIPASPASDYRSVTEEEKAGDLPFREVAGSLMWIANQTRPDI 369 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18181.4416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18181.4416.1 >prot_H-paniculata_contig18181.4416.1 ID=prot_H-paniculata_contig18181.4416.1|Name=mRNA_H-paniculata_contig18181.4416.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp MVVIHVDDIQIAGSKDVASVVVGSLNDRDREGDTLEISQTQCIRNVLVRFback to top mRNA from alignment at H-paniculata_contig18181:543..1048- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18181.4416.1 ID=mRNA_H-paniculata_contig18181.4416.1|Name=mRNA_H-paniculata_contig18181.4416.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=506bp|location=Sequence derived from alignment at H-paniculata_contig18181:543..1048- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18181:543..1048- >mRNA_H-paniculata_contig18181.4416.1 ID=mRNA_H-paniculata_contig18181.4416.1|Name=mRNA_H-paniculata_contig18181.4416.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig18181:543..1048- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |