mRNA_H-paniculata_contig18181.4416.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18181.4416.1
Unique NamemRNA_H-paniculata_contig18181.4416.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18181.4416.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 6.870e-41
Identity = 89/171 (52.05%), Postives = 105/171 (61.40%), Query Frame = 1
Query:    1 SNEVVLLNKSVYGLKQASRQ*YPLLVSSLQDFGSEQRLVDPCVLRLTVADLVVAMVVIHVDDIQIAGSKDVASVVVGSLND-------------------RDREGDTLEISQTQCIRNVLVRFNVTKTSLIPAPPCVELTEENEEGTLVDVPFQEVIGSLMWITNQTRLDI 456
            S +VV LNKS+YGLKQASR  Y  LVS L+  G EQ + DPCVLR  + D VV MV IHVDDI  AG+  +A VVV +L D                   RDRE  T+E+SQ   IR+VL RFNV +TS IPA P  +     E+    DVPF+EV+GSLMWI NQTR DI
Sbjct:  120 SGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTTSLAEVVVAALGDFLPTKSLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDI 290          
BLAST of mRNA_H-paniculata_contig18181.4416.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 6.730e-40
Identity = 90/171 (52.63%), Postives = 106/171 (61.99%), Query Frame = 1
Query:    1 SNEVVLLNKSVYGLKQASRQ*YPLLVSSLQDFGSEQRLVDPCVLRLTVADLVVAMVVIHVDDIQIAGSKDVASVVVGSLND-------------------RDREGDTLEISQTQCIRNVLVRFNVTKTSLIPAPPCVELTEENEEGTLVDVPFQEVIGSLMWITNQTRLDI 456
            S +VV LNKS+YGLKQASR  Y  LVS L+  G EQ + DPCVLR  + D VV MV IHVDDI  AG+K +A VVV +L D                   RDRE  T+E+SQ   IR+VL RFNV +TS IPA P  +     E+    DVPF+EV+GSLMWI NQTR DI
Sbjct:  586 SGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDI 756          
BLAST of mRNA_H-paniculata_contig18181.4416.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 6.990e-40
Identity = 90/171 (52.63%), Postives = 106/171 (61.99%), Query Frame = 1
Query:    1 SNEVVLLNKSVYGLKQASRQ*YPLLVSSLQDFGSEQRLVDPCVLRLTVADLVVAMVVIHVDDIQIAGSKDVASVVVGSLND-------------------RDREGDTLEISQTQCIRNVLVRFNVTKTSLIPAPPCVELTEENEEGTLVDVPFQEVIGSLMWITNQTRLDI 456
            S +VV LNKS+YGLKQASR  Y  LVS L+  G EQ + DPCVLR  + D VV MV IHVDDI  AG+K +A VVV +L D                   RDRE  T+E+SQ   IR+VL RFNV +TS IPA P  +     E+    DVPF+EV+GSLMWI NQTR DI
Sbjct:  853 SGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDI 1023          
BLAST of mRNA_H-paniculata_contig18181.4416.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 2.160e-38
Identity = 92/173 (53.18%), Postives = 105/173 (60.69%), Query Frame = 1
Query:    1 SNEVVLLNKSVYGLKQASRQ*YPLLVSSLQDFGSEQRLVDPCVLRLTVADLVVAMVVIHVDDIQIAGSKDVASVVVGSLND-------------------RDREGDTLEISQTQCIRNVLVRFNVTKTSLIPAPPCV--ELTEENEEGTLVDVPFQEVIGSLMWITNQTRLDI 456
            S +VV LNKS+YGLKQASR  Y  LVS L+  G EQ L DPCVLR  + D V+ MV IHVDDI  AGSK +A  VV +L D                   RDRE  T+EISQ   IR+VL RFNV +TS IPA P V      ENEE    DVPF+EV+G  MWI +QTR DI
Sbjct:  305 SGKVVRLNKSLYGLKQASRTFYMRLVSDLKRIGFEQSLSDPCVLRFMMGDEVMGMVAIHVDDILYAGSKSLAETVVAALGDSLPTKNLGEVKFFLGCAFRRDREAGTIEISQESYIRSVLERFNVVRTSSIPASPTVVNRSVMENEEAG--DVPFREVVGCAMWIASQTRPDI 475          
BLAST of mRNA_H-paniculata_contig18181.4416.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 1.370e-37
Identity = 88/171 (51.46%), Postives = 105/171 (61.40%), Query Frame = 1
Query:    1 SNEVVLLNKSVYGLKQASRQ*YPLLVSSLQDFGSEQRLVDPCVLRLTVADLVVAMVVIHVDDIQIAGSKDVASVVVGSLND-------------------RDREGDTLEISQTQCIRNVLVRFNVTKTSLIPAPPCVELTEENEEGTLVDVPFQEVIGSLMWITNQTRLDI 456
            S +VV LNKS+YGLKQASR  Y  LVS L+  G EQ + DPCVLR  + D VV MV IHVDDI  AG+K +A VVV +L D                   RDR+  T+EISQ   IR+VL RFN+ +TS IPA    +     EE    DVPF+EV+GSLMWI +QTR DI
Sbjct: 1027 SEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIPASLNNDDRSLMEEEGAGDVPFREVVGSLMWIASQTRADI 1197          
BLAST of mRNA_H-paniculata_contig18181.4416.1 vs. uniprot
Match: A0A6H5KS88_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS88_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.770e-37
Identity = 80/168 (47.62%), Postives = 99/168 (58.93%), Query Frame = 1
Query:    1 SNEVVLLNKSVYGLKQASRQ*YPLLVSSLQDFGSEQRLVDPCVLRLTVADLVVAMVVIHVDDIQIAGSKDVASVVVGSLND-------------------RDREGDTLEISQTQCIRNVLVRFNVTKTSLIPAPPCVELTEENEEGTLVDVPFQEVIGSLMWITNQTR 447
            S ++V LNKS+YGLKQASR  Y  LVS L   G EQ L DPCVLR  + D V+ ++ IHVDDI  AG+K +A V+  +L D                   RDRE  T+EISQ   I +VL RFN+ +TS IPA P  +     E+    DVPF+EV+G LMWI N TR
Sbjct:    2 SGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIAEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIWSVLERFNICRTSSIPASPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTR 169          
BLAST of mRNA_H-paniculata_contig18181.4416.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.880e-37
Identity = 83/168 (49.40%), Postives = 100/168 (59.52%), Query Frame = 1
Query:    1 SNEVVLLNKSVYGLKQASRQ*YPLLVSSLQDFGSEQRLVDPCVLRLTVADLVVAMVVIHVDDIQIAGSKDVASVVVGSLND-------------------RDREGDTLEISQTQCIRNVLVRFNVTKTSLIPAPPCVELTEENEEGTLVDVPFQEVIGSLMWITNQTR 447
            S ++V LNKS+YGLKQASR  Y  LVS L   G EQ L DPCVLR  + D V+ +  IHVDDI  AG+K +A V+V +L D                   RDRE  T+EISQ   IRNVL RFN+ +TS IPA P  +     E+    DVPF+EV+G LMWI N TR
Sbjct:   11 SGKIVRLNKSLYGLKQASRTSYKRLVSDLLWIGFEQSLSDPCVLRFMMGDEVMGIFAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCEISRDREAGTIEISQESYIRNVLERFNICRTSSIPASPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTR 178          
BLAST of mRNA_H-paniculata_contig18181.4416.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 2.510e-37
Identity = 87/171 (50.88%), Postives = 105/171 (61.40%), Query Frame = 1
Query:    1 SNEVVLLNKSVYGLKQASRQ*YPLLVSSLQDFGSEQRLVDPCVLRLTVADLVVAMVVIHVDDIQIAGSKDVASVVVGSLND-------------------RDREGDTLEISQTQCIRNVLVRFNVTKTSLIPAPPCVELTEENEEGTLVDVPFQEVIGSLMWITNQTRLDI 456
            S +VV LNKS+YGL+QASR  Y  LVS L+  G EQ + DPCVLR  + D VV MV IHVDDI  AG+K +A VVV +L D                   RDR+  T+EISQ   IR+VL RFN+ +TS IPA    +     EE    DVPF+EV+GSLMWI +QTR DI
Sbjct:  155 SEKVVRLNKSLYGLRQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIPASLYNDDRSLMEEEGAGDVPFREVVGSLMWIASQTRADI 325          
BLAST of mRNA_H-paniculata_contig18181.4416.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 3.490e-37
Identity = 86/171 (50.29%), Postives = 103/171 (60.23%), Query Frame = 1
Query:    1 SNEVVLLNKSVYGLKQASRQ*YPLLVSSLQDFGSEQRLVDPCVLRLTVADLVVAMVVIHVDDIQIAGSKDVASVVVGSLND-------------------RDREGDTLEISQTQCIRNVLVRFNVTKTSLIPAPPCVELTEENEEGTLVDVPFQEVIGSLMWITNQTRLDI 456
            S +VV LNKS+YGLKQASR  Y  LVS L+  G EQ L DPCVLR  + D V+ MV IHVDDI  AG+K +A VVV +L D                   RDRE  T+EISQ   IR+VL RF + +TS IPA P  +     E+    DVPF+EV+G LMW+ N TR DI
Sbjct:  918 SGKVVRLNKSLYGLKQASRTFYKRLVSDLKRIGFEQSLSDPCVLRFMMGDEVLGMVAIHVDDILYAGTKSLAKVVVEALGDSLPTKNLGEVKFFLGCAFIRDREAGTIEISQESYIRSVLERFKICRTSSIPASPANDNRSVMEDEEAGDVPFREVVGCLMWVANGTRPDI 1088          
BLAST of mRNA_H-paniculata_contig18181.4416.1 vs. uniprot
Match: A0A6H5JNA7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNA7_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 1.380e-36
Identity = 80/171 (46.78%), Postives = 102/171 (59.65%), Query Frame = 1
Query:    1 SNEVVLLNKSVYGLKQASRQ*YPLLVSSLQDFGSEQRLVDPCVLRLTVADLVVAMVVIHVDDIQIAGSKDVASVVVGSLND-------------------RDREGDTLEISQTQCIRNVLVRFNVTKTSLIPAPPCVELTEENEEGTLVDVPFQEVIGSLMWITNQTRLDI 456
            S + V L+KS+YGL+QASR  +  LVS L+  G EQ L DPCVLR  + D ++ M+ IHVDDI   G + +A+ VV +L D                   RDRE  T+E+SQ  C+R VL RFN+ +TS IPA P  +     EE    D+PF+EV GSLMWI NQTR DI
Sbjct:  199 SGKAVRLDKSLYGLRQASRTFHKRLVSDLKTIGFEQSLSDPCVLRFIMGDEMMDMIAIHVDDILYGGIESLATTVVQALGDSFRTKNLGEVKFFLGCAFNRDREARTIEMSQVSCVRRVLERFNICRTSPIPASPASDYRSVTEEEKAGDLPFREVAGSLMWIANQTRPDI 369          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18181.4416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQD0_9PHAE6.870e-4152.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKK1_9PHAE6.730e-4052.63Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE6.990e-4052.63Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KPV1_9PHAE2.160e-3853.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KZH7_9PHAE1.370e-3751.46Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KS88_9PHAE1.770e-3747.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRE7_9PHAE1.880e-3749.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L3I1_9PHAE2.510e-3750.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB16_9PHAE3.490e-3750.29Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JNA7_9PHAE1.380e-3646.78Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18181contigH-paniculata_contig18181:543..1048 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size456
Cds size294
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18181.4416.1prot_H-paniculata_contig18181.4416.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18181 543..886 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929413.1461148-CDS-H-paniculata_contig18181:542..7531622929413.1461148-CDS-H-paniculata_contig18181:542..753Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18181 543..753 -
1691480850.5186653-CDS-H-paniculata_contig18181:542..7531691480850.5186653-CDS-H-paniculata_contig18181:542..753Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18181 543..753 -
1622929413.1602302-CDS-H-paniculata_contig18181:803..8861622929413.1602302-CDS-H-paniculata_contig18181:803..886Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18181 804..886 -
1691480850.5274925-CDS-H-paniculata_contig18181:803..8861691480850.5274925-CDS-H-paniculata_contig18181:803..886Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18181 804..886 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929413.1789272-UTR-H-paniculata_contig18181:886..10481622929413.1789272-UTR-H-paniculata_contig18181:886..1048Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18181 887..1048 -
1691480850.5351324-UTR-H-paniculata_contig18181:886..10481691480850.5351324-UTR-H-paniculata_contig18181:886..1048Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18181 887..1048 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18181.4416.1

>prot_H-paniculata_contig18181.4416.1 ID=prot_H-paniculata_contig18181.4416.1|Name=mRNA_H-paniculata_contig18181.4416.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp
MVVIHVDDIQIAGSKDVASVVVGSLNDRDREGDTLEISQTQCIRNVLVRF
NVTKTSLIPAPPCVELTEENEEGTLVDVPFQEVIGSLMWITNQTRLDI
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mRNA from alignment at H-paniculata_contig18181:543..1048-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18181.4416.1 ID=mRNA_H-paniculata_contig18181.4416.1|Name=mRNA_H-paniculata_contig18181.4416.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=506bp|location=Sequence derived from alignment at H-paniculata_contig18181:543..1048- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGAATGAGGTGGTACTGCTGAATAAGTCGGTGTACGGTCTCAAGCAGGC TTCGAGACAATGATATCCGTTGTTGGTATCGTCTCTTCAGGATTTCGGTT CTGAGCAACGCTTGGTGGACCCATGCGTGTTGAGACTTACTGTGGCTGAT CTGGTGGTTGCGATGGTGGTCATACATGTTGACGATATCCAGATTGCAGG ATCCAAAGACGTTGCGAGTGTGGTGGTTGGTTCTCTTAATGACAGGTGAA GGATCTTGGTGAGCTATCGTGGTACATGGAGAGTGATTACAGAAGGGACA GAGAAGGGGATACTCTAGAAATATCACAAACGCAATGTATTCGAAACGTC CTCGTTCGTTTCAACGTCACAAAAACAAGCTTAATCCCTGCCCCCCCATG TGTGGAACTTACGGAAGAGAACGAAGAGGGGACCCTGGTGGATGTGCCGT TCCAAGAGGTGATCGGGAGCCTTATGTGGATCACCAATCAGACCCGACTC GACATA
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Coding sequence (CDS) from alignment at H-paniculata_contig18181:543..1048-

>mRNA_H-paniculata_contig18181.4416.1 ID=mRNA_H-paniculata_contig18181.4416.1|Name=mRNA_H-paniculata_contig18181.4416.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig18181:543..1048- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGTCATACATGTTGACGATATCCAGATTGCAGGATCCAAAGACGT
TGCGAGTGTGGTGGTTGGTTCTCTTAATGACAGATGGTGGTCATACATGT
TGACGATATCCAGATTGCAGGATCCAAAGACGTTGCGAGTGTGGTGGTTG
GTTCTCTTAATGACAGGGACAGAGAAGGGGATACTCTAGAAATATCACAA
ACGCAATGTATTCGAAACGTCCTCGTTCGTTTCAACGTCACAAAAACAAG
CTTAATCCCTGCCCCCCCATGTGTGGAACTTACGGAAGAGAACGAAGAGG
GGACCCTGGTGGATGTGCCGTTCCAAGAGGTGATCGGGAGCCTTATGTGG
ATCACCAATCAGACCCGACTCGACATAGGACAGAGAAGGGGATACTCTAG
AAATATCACAAACGCAATGTATTCGAAACGTCCTCGTTCGTTTCAACGTC
ACAAAAACAAGCTTAATCCCTGCCCCCCCATGTGTGGAACTTACGGAAGA
GAACGAAGAGGGGACCCTGGTGGATGTGCCGTTCCAAGAGGTGATCGGGA
GCCTTATGTGGATCACCAATCAGACCCGACTCGACATA
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