mRNA_H-paniculata_contig1818.4415.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1818.4415.1
Unique NamemRNA_H-paniculata_contig1818.4415.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1818.4415.1 vs. uniprot
Match: D8LNR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNR7_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 8.490e-12
Identity = 52/113 (46.02%), Postives = 64/113 (56.64%), Query Frame = 3 
Query:   81 MRRGVATATXXXXXRALGFANRGARRARRPCMVEGTREGATIPPRGSLRAGPRISSA----EGRMLEDFLLFRSQAGAVAILAMQVRTAGSAAGA---CLELLEGDWDDDDGT 398
            MR G+ATA      RALGF  R ARR R PC   G          G   AGPR +S+    +GRM+E+F++ RSQ GA  +LA Q+R A  + G     LE+ EGD DDDDGT
Sbjct:    1 MRVGLATA------RALGFVTRRARRGRGPCSQSGLHRTPNAAA-GPQAAGPRTASSSAASQGRMVEEFVMSRSQLGAATVLATQIRGAVCSVGGGDFSLEV-EGDGDDDDGT 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1818.4415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNR7_ECTSI8.490e-1246.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1818contigH-paniculata_contig1818:18027..21554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons4
Model size1265
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1818.4415.1prot_H-paniculata_contig1818.4415.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1818 18107..20374 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929413.0181506-UTR-H-paniculata_contig1818:18026..181061622929413.0181506-UTR-H-paniculata_contig1818:18026..18106Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1818 18027..18106 +
1691480850.4718258-UTR-H-paniculata_contig1818:18026..181061691480850.4718258-UTR-H-paniculata_contig1818:18026..18106Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1818 18027..18106 +
1622929413.086309-UTR-H-paniculata_contig1818:20374..203851622929413.086309-UTR-H-paniculata_contig1818:20374..20385Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1818 20375..20385 +
1691480850.5025907-UTR-H-paniculata_contig1818:20374..203851691480850.5025907-UTR-H-paniculata_contig1818:20374..20385Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1818 20375..20385 +
1622929413.1010218-UTR-H-paniculata_contig1818:20701..215541622929413.1010218-UTR-H-paniculata_contig1818:20701..21554Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1818 20702..21554 +
1691480850.5102692-UTR-H-paniculata_contig1818:20701..215541691480850.5102692-UTR-H-paniculata_contig1818:20701..21554Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1818 20702..21554 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929413.0381725-CDS-H-paniculata_contig1818:18106..181921622929413.0381725-CDS-H-paniculata_contig1818:18106..18192Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1818 18107..18192 +
1691480850.480146-CDS-H-paniculata_contig1818:18106..181921691480850.480146-CDS-H-paniculata_contig1818:18106..18192Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1818 18107..18192 +
1622929413.051556-CDS-H-paniculata_contig1818:18535..186501622929413.051556-CDS-H-paniculata_contig1818:18535..18650Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1818 18536..18650 +
1691480850.487449-CDS-H-paniculata_contig1818:18535..186501691480850.487449-CDS-H-paniculata_contig1818:18535..18650Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1818 18536..18650 +
1622929413.071704-CDS-H-paniculata_contig1818:20254..203741622929413.071704-CDS-H-paniculata_contig1818:20254..20374Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1818 20255..20374 +
1691480850.494901-CDS-H-paniculata_contig1818:20254..203741691480850.494901-CDS-H-paniculata_contig1818:20254..20374Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1818 20255..20374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1818.4415.1

>prot_H-paniculata_contig1818.4415.1 ID=prot_H-paniculata_contig1818.4415.1|Name=mRNA_H-paniculata_contig1818.4415.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MRRGVATATATATARALGFANRGARRARRPCMVEGTREGATIPPRGSLRA
GPRISSAEGRMLEDFLLFRSQAGAVAILAMQVRTAGSAAGACLELLEGDW
DDDDGT*
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mRNA from alignment at H-paniculata_contig1818:18027..21554+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1818.4415.1 ID=mRNA_H-paniculata_contig1818.4415.1|Name=mRNA_H-paniculata_contig1818.4415.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3528bp|location=Sequence derived from alignment at H-paniculata_contig1818:18027..21554+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTAACATTATCAGTCATCATTCATGATTCGTTATGTGTCCCCTTTTTGC
CTTCGGTGAAAGGAACCCTGCACTATCAACATGAGAAGAGGAGTAGCAAC
AGCAACAGCAACAGCAACAGCAAGAGCACTTGGTTTTGCTAATCGTGGGG
CACGCCGGGCGCGGAGGTGTAGAATTTTGTATTGTTTGCTCTTGCTACTC
ACCGAAATATACCTCTCAAAATGGTGTGTTGGTGTCCGCACACGAGACCA
ACGATGCACTGACTAACTGTATTGCACACCATGACCATCAGTAGTCCTAA
CGGGTTTCCCCGACGACATACCATGTACTAATGCTCGTGCTTTGATATAT
GGGAGTTCCTTTACCAGGTACTTTCTCATTGTTGGAGTTCTCAACGTCGG
TCGGTCTCTTGTTCCCCATGCACTTGGTCATACTCACCTTACATGGATCT
GTACTGTAATATATTGTATTGTACTGCACTGCTCTGTACCGTACTGCACG
ACACGAAAGACCATGCATGGTGGAGGGAACAAGAGAAGGGGCAACAATTC
CCCCGAGAGGATCTTTGCGTGCCGGGCCACGAATATCGTCTGCCGAGGGG
CGCATGCTGGAAGATTTTCTTTTGGTAAGCACGTCGCGTGGACCAGCGAC
TGGGGTTCATGGGTAGGATGACAACTTCTCCTCTGACTAAATCACCATTC
ATTCTGAACTATGATGTAAATTTACTTTACACGACAGCAGTCTCTTGAGG
CCGCCGCAAGTCATCTTGAGGGTCAACAACGAATCGAGCACTGTGCACGG
GGCAACTGCAATCTGTTTTCCCTGTACCTTTCAAGTAATTAAGCACCGTT
GGGGTCAATTTTAGTCCATTTTTTGGGCCCTGTAAACATTTAGATCTACG
AGGCTTTTTCGGAATAGAAAAATGTAATCTGACAAATTTAAATTTCGAGA
GAGCGCTGCAGTCATTCGTTGTAGGGAGAACTATGTGAGCCATGTATCAC
TCCTGACTGTACGGGATTGTTTGTCTGAATAGCGTCGACTTCGACTCCCT
GTTTCAGTGATGATGTCGTTAGATGAATGATCTTATTAGATAGATGGCGG
TGAAACTTAGTTGACAACTCAGCTATCGATGCCATAAGCAATCGGGGGTC
CAATATTCATTTTTTCGCAGTCAGCGTGATGAGCCGTCAATTTGACTGTG
GAGAGTTGAATTGGTGCGGGATGGGCAGATGATGCCGTAAGCTTTCTAGA
GATTCCGCCAACTTTGGCCAACGTATTGTGGGTGTGGAGGCATCCACTAT
CCCGCAGCAAAGGTTCTAATTTGCTTATCGTCGAACAAGGACAACGGCTA
GTTGACTCCCTAGGTGCTTGGCATGCATCCTGTACTGCCTTGACAATTTG
TGGACACGCACACTACATCCAGTATCCCAAGCATCCCACTCTTGAGTAGA
CCTTTTCCACGTTCCATGTGAACGTAGCACGGAAACTAGTACGAGACAGA
TGGCTACAGTTGGTGTCATGACCTTCTGTGTATCCTCCATGCGTGAAAAA
CCGATGTTCCCGCACCCCTGCACTGCTCACTTGTACCGACCTCTGTTACA
TCTGTATCATGTGTCCCCAGATGAGCGTTGTGCGGCGCTCGCAGTAATTC
TGGAACTATATTTTACCCAGGTTGTCTGACGCGACAGCCTTGAGGATATT
AATCTTCGCTATTGTGACTGTCTGATGAGACCCATGGTCGGTCTTCTACT
CATTTCAGAGTGCTCACTCTACCTGGCATAGACTCTCCAACCCAAACTTG
AACTTCAAGTCGAATCAGCGGCTGCAGTGCCGTCTATTTTCAGTGGCCGT
CGGTTCCCGGAAGGCCTAAAATCGACCGAGCACCGAAGTGCCGGCATTGC
CTTCCTCCTTCCATCCATGTTGCCGTGCGATGCTGTCGTCGTTTTGCCAA
CAAATTGCGCAACGATGTTATATGGGCTGTCGCAAGTATTGCGTGTGCAT
TAGCCTGCAAGAGGTGGAATTTACGGCGTGCACGAACGTCAAGAGGCCAC
CTCACTACTGTAAATGTATCTGTCAGCCAGCTCGACCCTCGCTTCTTCTG
CGTATTTAGTAAGTACCTCTGCGCAAGAAATTGCCTTACGATTGCTCGTG
TATACTGTAGCGATTCGCGTGCTGAACGCGTAGCGTGTGCCTGCTGTTTC
CGAAACCCGCGCGCATCTGCCGGCACAGTTTCGTAGTCAAGCAGGTGCTG
TGGCGATACTAGCAATGCAAGTACGAACTGCAGGGTCCGCGGCGGGTGCG
TGCTTGGAGCTTTTGGAGGGAGATTGGGACGACGACGATGGAACGTAGGT
TGGCGCTCGGTGCGTGCATTATTGTGCCGATCATCATCATGAACGGGTTT
GAGCTACAGTCACGTTCTTGAATCCGTCGTTATAGCAATCGGAATCCTTG
TTGCCCTCGGTGGTGTGCCTTCCTCTCTCCCTGCCTACACACCAACCAGA
TTCGTTTGTCGAATTTTTTGTTGCCAGTAAGGTTTCTCTTTTTCCGCCAC
TTGTTATCAAAAAAAGAGAATGCGTCCCCATGACTGTACTTTGTTAGCGG
AGTTTTCTGTTATCAATTCTTTCGACCACTGCACTTGCTCATACTCCCAT
CATCACTCGACTGACTACCCCACAGTTGACAGCGGCCACTTCGCGCCTCC
ATCAGATGACGGATGCTGCCTTGCGAAGAAGATTAAGGGATGGTAACAAC
GCCGAGCGAGGAGCCGAGCCGGAGGCCAGGTCAAGATAATAGCCTTGGAT
GTCCTCTGCATCGCGGAGTGCTGGAATTGCGGAGCAGCAAGCTGACGGCA
TGGACCTAATCTAGGGTACATGTTGGAGGAATCTGCATGTGTAGTAGATG
ATGCCAGTATTTGTACCTCGGAGGAACCAAGGGTGCGGTAGGACAATCTT
AAAGGCTTATTTGTGTCGTTGTGCTGACCCTTTTTGATCTTGTCTCGGTC
TCACATAGAACCATGCTCTCTTTCGGTTGAGGTGTAGGTCATATGTCAAC
AGGGATTTGTGTGAGCATCTCGTGTAGCTAGCTCTAAACAGTAGGTTTCG
TCCAATCTTCCTCGTGCTATCTTCTACTGAAGGCAGATTTCTTGCTTGAA
ATGTCGCTTACAAGGTTTAACGGACGTCCATTAAGGTATTTTTGACACTG
GTAGCTTTGTTGTGGGCATGATTTGTTTTTTGCGGTAAAACCTGAGTTAA
GTAAAATACTGTCATGTATCTGGACACAAGTCATGAGTCCTTCTGGACAG
AGGATATGCGATTGATGTGTCACGTACCAATCCATGACCAAAATTTTAAT
TGGTGCAGTACCTGCTGTACAGAGGCACACGTAGAGTACATGTCGGCCAC
AGATTGAAATTAATGCCCTTGTGTCTTACGATTACCTAGTAGGCAGGCGA
AGGCTAGGGTATTTGTGGCAGCGATGTAAATGATTTAACTGATAACTCGT
CAAACTGCTGACGCCTCGTCGCACTTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig1818:18027..21554+

>mRNA_H-paniculata_contig1818.4415.1 ID=mRNA_H-paniculata_contig1818.4415.1|Name=mRNA_H-paniculata_contig1818.4415.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig1818:18027..21554+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAAGAGGAGTAGCAACAGCAACAGCAACAGCAACAGCAAGAGCACT
TGGTTTTGCTAATCGTGGGGCACGCCGGGCGCGGAGATGAGAAGAGGAGT
AGCAACAGCAACAGCAACAGCAACAGCAAGAGCACTTGGTTTTGCTAATC
GTGGGGCACGCCGGGCGCGGAGACCATGCATGGTGGAGGGAACAAGAGAA
GGGGCAACAATTCCCCCGAGAGGATCTTTGCGTGCCGGGCCACGAATATC
GTCTGCCGAGGGGCGCATGCTGGAAGATTTTCTTTTGACCATGCATGGTG
GAGGGAACAAGAGAAGGGGCAACAATTCCCCCGAGAGGATCTTTGCGTGC
CGGGCCACGAATATCGTCTGCCGAGGGGCGCATGCTGGAAGATTTTCTTT
TGTTTCGTAGTCAAGCAGGTGCTGTGGCGATACTAGCAATGCAAGTACGA
ACTGCAGGGTCCGCGGCGGGTGCGTGCTTGGAGCTTTTGGAGGGAGATTG
GGACGACGACGATGGAACGTAGTTTCGTAGTCAAGCAGGTGCTGTGGCGA
TACTAGCAATGCAAGTACGAACTGCAGGGTCCGCGGCGGGTGCGTGCTTG
GAGCTTTTGGAGGGAGATTGGGACGACGACGATGGAACGTAG
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