prot_H-paniculata_contig18179.4414.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig18179.4414.1
Unique Nameprot_H-paniculata_contig18179.4414.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length398
Homology
[Close]
BLAST of mRNA_H-paniculata_contig18179.4414.1 vs. uniprot
Match: D8LLG9_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLG9_ECTSI)

HSP 1 Score: 232 bits (591), Expect = 3.600e-64
Identity = 163/305 (53.44%), Postives = 192/305 (62.95%), Query Frame = 0 
Query:    1 MTAVNEAGLVPDILMLSAAVEACSNAGDGEGAVHFYDQAIRLGFAPDEGMYQEGIIAYSNSGKWIEARDLALQWRERAGLASSPSPSXXXXXXXXXXXXXXXXXXXEIGLLAPCLPPPPAACNTALIKAMGKAGRPDEALAWIRDTAKCTLAATAAAXXXXXXXGSAVTVSETTVSRSGITLDHSSFLAALSACSRVGEWELALQVLHEMDVVGIKPETSAYNTALAGMYVCMYVCVESGGGGA---EAPRXXXXXXXXXXXXXXXXXXXXXXXNSIINVLRWGGQGELALDVLEGMKRASGGRG 302
            M+AV +AGLV DI MLSAA++ACS A D EGAVHF DQAIRLG  PD+ M++E I+AYS +GKW+EARDLALQWR +A     PSP+ XXXXXXXXXXXXXXXXXX         PPPP  CNTA++KAMGKAG+ DEA+AW+ DT     A   AA       G+  T  E    R  + LDHSSF+A LSACS+ G W  AL VL EMD  G+ PET A+NT LA      +    S GGGA   EAPR                       NS+INVLRWGGQ + AL++L+GM  A GG G
Sbjct:  328 MSAVQQAGLVADIEMLSAAMDACSKARDTEGAVHFMDQAIRLGLKPDDTMFREAILAYSLAGKWVEARDLALQWRGQA-----PSPASXXXXXXXXXXXXXXXXXXS-------RPPPPTVCNTAILKAMGKAGKVDEAIAWLGDTYDAATATATAAS------GAGTTEDEQGSVRGFVCLDHSSFMAVLSACSKAGRWGSALSVLREMDRAGVTPETVAFNTVLAAFEHRAHSGGSSSGGGAAKREAPRWPMALELLADMERRGVEPDVVTYNSLINVLRWGGQRDRALEILDGMN-AKGGAG 613
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18179.4414.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLG9_ECTSI3.600e-6453.44PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 115..231
e-value: 7.7E-14
score: 53.4
coord: 2..92
e-value: 5.2E-8
score: 34.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 232..397
e-value: 1.5E-32
score: 115.4
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 124..144
e-value: 0.074
score: 13.3
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 255..296
e-value: 1.5E-5
score: 24.9
coord: 175..226
e-value: 3.3E-6
score: 27.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 189..217
e-value: 1.1E-4
score: 20.1
coord: 367..395
e-value: 1.5E-4
score: 19.7
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 324..378
e-value: 2.7E-10
score: 40.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 325..364
score: 9.372
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 230..266
score: 5.842
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 47..82
score: 6.149
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 365..398
score: 10.194
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 12..46
score: 8.396
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 183..217
score: 10.282
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 267..297
score: 7.958
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 119..153
score: 6.248
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 125..396

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18179contigH-paniculata_contig18179:836..4622 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18179.4414.1mRNA_H-paniculata_contig18179.4414.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig18179 836..4622 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig18179.4414.1 ID=prot_H-paniculata_contig18179.4414.1|Name=mRNA_H-paniculata_contig18179.4414.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=398bp
MTAVNEAGLVPDILMLSAAVEACSNAGDGEGAVHFYDQAIRLGFAPDEGM
YQEGIIAYSNSGKWIEARDLALQWRERAGLASSPSPSSSLSSSSNDTNTS
GGGGGGEIGLLAPCLPPPPAACNTALIKAMGKAGRPDEALAWIRDTAKCT
LAATAAAAEAEASAGSAVTVSETTVSRSGITLDHSSFLAALSACSRVGEW
ELALQVLHEMDVVGIKPETSAYNTALAGMYVCMYVCVESGGGGAEAPRWP
HALELLAQMEERGVRPDVVTFNSIINVLRWGGQGELALDVLEGMKRASGG
RGGARRQGGGMGEEGGEEGVVVRPDVITYNRAIAACAAVEEGSGAEWQKA
CDLLAEMRRKGLKPDLYSYTSAIHACAKAGQSSEAVRLLRAMENNQVL
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat