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Homology
BLAST of mRNA_H-paniculata_contig18179.4414.1 vs. uniprot
Match: D8LLG9_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLG9_ECTSI) HSP 1 Score: 232 bits (591), Expect = 3.600e-64 Identity = 163/305 (53.44%), Postives = 192/305 (62.95%), Query Frame = 1
Query: 1 MTAVNEAGLVPDILMLSAAVEACSNAGDGEGAVHFYDQAIRLGFAPDEGMYQEGIIAYSNSGKWIEARDLALQWRERAGLASSPSPSXXXXXXXXXXXXXXXXXXXEIGLLAPCLPPPPAACNTALIKAMGKAGRPDEALAWIRDTAKCTLAATAAAXXXXXXXGSAVTVSETTVSRSGITLDHSSFLAALSACSRVGEWELALQVLHEMDVVGIKPETSAYNTALAGMYVCMYVCVESGGGGA---EAPRXXXXXXXXXXXXXXXXXXXXXXXNSIINVLRWGGQGELALDVLEGMKRASGGRG 906
M+AV +AGLV DI MLSAA++ACS A D EGAVHF DQAIRLG PD+ M++E I+AYS +GKW+EARDLALQWR +A PSP+ XXXXXXXXXXXXXXXXXX PPPP CNTA++KAMGKAG+ DEA+AW+ DT A AA G+ T E R + LDHSSF+A LSACS+ G W AL VL EMD G+ PET A+NT LA + S GGGA EAPR NS+INVLRWGGQ + AL++L+GM A GG G
Sbjct: 328 MSAVQQAGLVADIEMLSAAMDACSKARDTEGAVHFMDQAIRLGLKPDDTMFREAILAYSLAGKWVEARDLALQWRGQA-----PSPASXXXXXXXXXXXXXXXXXXS-------RPPPPTVCNTAILKAMGKAGKVDEAIAWLGDTYDAATATATAAS------GAGTTEDEQGSVRGFVCLDHSSFMAVLSACSKAGRWGSALSVLREMDRAGVTPETVAFNTVLAAFEHRAHSGGSSSGGGAAKREAPRWPMALELLADMERRGVEPDVVTYNSLINVLRWGGQRDRALEILDGMN-AKGGAG 613
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 236.1 |
| Seed ortholog evalue | 2.8e-59 |
| Seed eggNOG ortholog | 2880.D8LLG9 |
| KEGG ko | ko:K17710 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | endonuclease activity |
| EggNOG OGs | KOG4197@1,KOG4197@2759 |
| Ec32 ortholog description | Pentatricopeptide repeat |
| Ec32 ortholog | Ec-00_004560.1 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko03016,ko03029 |
| Exons | 5 |
| Model size | 1194 |
| Cds size | 1194 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18179.4414.1 >prot_H-paniculata_contig18179.4414.1 ID=prot_H-paniculata_contig18179.4414.1|Name=mRNA_H-paniculata_contig18179.4414.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=398bp
MTAVNEAGLVPDILMLSAAVEACSNAGDGEGAVHFYDQAIRLGFAPDEGM
YQEGIIAYSNSGKWIEARDLALQWRERAGLASSPSPSSSLSSSSNDTNTS
GGGGGGEIGLLAPCLPPPPAACNTALIKAMGKAGRPDEALAWIRDTAKCT
LAATAAAAEAEASAGSAVTVSETTVSRSGITLDHSSFLAALSACSRVGEW
ELALQVLHEMDVVGIKPETSAYNTALAGMYVCMYVCVESGGGGAEAPRWP
HALELLAQMEERGVRPDVVTFNSIINVLRWGGQGELALDVLEGMKRASGG
RGGARRQGGGMGEEGGEEGVVVRPDVITYNRAIAACAAVEEGSGAEWQKA
CDLLAEMRRKGLKPDLYSYTSAIHACAKAGQSSEAVRLLRAMENNQVL back to topmRNA from alignment at H-paniculata_contig18179:836..4622+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig18179.4414.1 ID=mRNA_H-paniculata_contig18179.4414.1|Name=mRNA_H-paniculata_contig18179.4414.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3787bp|location=Sequence derived from alignment at H-paniculata_contig18179:836..4622+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAGCTGTGAACGAGGCAGGGCTCGTACCGGATATTCTTATGCTCTC
GGCCGCCGTGGAGGCGTGCTCGAATGCGGGTGACGGGGAAGGAGCAGTGC
ACTTCTATGACCAGGCGATTAGGCTGGGGTTTGCTCCGGATGAAGGCATG
TATCAAGAGGTGCGTAAAAAACAGAAGCGCATTGCGCATTGCGGCTTCGT
TGGACAGCCTTATATTGTCATGGTTTGTGAGGCTACTGTTTGCAACGGAG
AGAACTTCGTAAGGTGGACCTGACCGAGGGTGAACAGGGTGAAATCAAGT
CGCCTTTCTTTTAGGTGGGGGCAAGTGGGGAGGGGGGGGGGGGGGGTTAC
GTTTGCCCATCAAACGCTACCGTTAGCTACACGTCAAGCCAGAGAACAAT
TCAAGAGTTCTCGTGGCTTGTTTTCCAAGGACACCGTGGTTGAAAAGTTT
GCTGCAGCTTTTGGAGGTGAATAGTGCCTTCGGCTGCACTCTCTGTGTCT
CGCTCTCTTGCTTTATATATATATATATATTATATATGTCTACATGAGCG
CTTGGACCAAGAAAGTGAAGTGCACGTCGACAGGGTGTAGCGTACCAGGA
GAACCCCGAAAGACATGTCAACAAGCCGCGATCGATGCATGAAAGTGTGT
CGAACGACCAGTCAAAAAACAAGACTGCCGTGAAAGTTAACCCTGCAACG
GTGTAACAGCTATCACGAGGCAGACGTTATTATAACTTTTTTGTGCTTGT
AAGATATAGTTTGTGCTCATATACTTGTCTATTTTTGATGTCTTTTATGT
TTACTCTTTGCAGGGCATCATAGCGTACAGCAACTCGGGCAAATGGATCG
AGGCCCGCGATCTCGCTCTGCAGTGGCGCGAGCGAGCGTCAGCGTTATCA
GATACTTCTTCTCCTCGGCTCAGTGGTCTGGCATCATCACCATCACCATC
ATCATCGTTATCGTCATCATCCAATGACACGAATACTTCTGGTGGTGGTG
GGGGTGGTGAGATTGGCTTGTTGGCGCCCTGTTTGCCCCCTCCCCCCGCA
GCGTGCAACACGGCCCTGATTAAGGCAATGGGGAAGGCCGGAAGGCCGGA
CGAGGCGCTAGCTTGGATTAGAGATACAGCGAAATGCACGCTTGCCGCGA
CCGCGGCCGCGGCAGAGGCGGAGGCCTCGGCAGGGTCGGCCGTGACGGTT
TCAGAAACGACGGTTTCAAGATCGGGAATTACCTTGGATCACTCTTCATT
TTTGGCGGCCTTGTCTGCGTGCTCGAGGGTCGGGGAGTGGGAGTTGGCTT
TGCAAGTGCTGCACGAGATGGATGTCGTTGGGATTAAGCCGGAAACTAGC
GCCTACAATACTGCACTCGCCGGTATGTATGTATGTATGTATGTATGTGT
GTCCGGTGAAAATCGGCGATTGAAGGGTCGGATTAAGCACGCGTTAAATC
CGTTCATGGTGATTAACTGATCTTTGGAATTGATGAAGGCGCCGACAGCC
GAAGCTGTAAGCATAGCTCTAGAGGTGCTGTATGTATTGAATAAAACCTT
TAAAAAACGCCGCTGAAGGTGGACGGCTGGCTCGCGTAGCGTTGCAAGCT
AACTGTGTATGTATGTATGTATGTATGTATGTATGCATGCATACCATTAA
GTAGCACTGTACTGTACTGTACTGTACTGTACTACGTCTCATTTTTCGTG
GCGACAAGTAAGGGTCATTAGTAGCGAGAACGAACGTTAAGAGACCCAAC
AACTCCATAATAATTCAAAATCCAAAATTGGGTCGAACGGAAAATTTAGG
CCATATTAATCAACCGAATTGACCGCTTAGGACTTTTGAACCGAGGAATT
TCGACTCTTATCACAGTCCACCTAAATTTTTCATTATTTCCGCCCTATAA
GTGCTTAGTCGCTGGTCATGAACCAAAAAGGGCAGGTTGACCGGTGGACG
AGGATTCGCAAACATCAGGTATCCCTTTTGATACCCCCCCCCCCCTTCCC
CTAGTTGCTTAATTTTTGCCGATTAGTATATATCTCTATCCATATCTAGG
TCAGATTTATTTTGTTTTTTTGTGTTTATCATGTTCTACGCTAAACAAGT
TCCACATGTATACATACAGTGCGCATGATTTAATACAGAGTACTATCAAA
AGCAGGTGAAGTAACAAGTGCGTGTCCGTCCCTCCCGCCCCTCTCCCCTC
CCCTCCCCTCCCTGCCGCGGATCCCAATGCAATGCAACGCAACGCAACGC
AACGCGCGTGCGCCCTTGAAACAAAAATAAATAATAATAATAATAATAAT
AATACGTCCAGCGTTCGAGCACCGGCGCTACGCCCGCACAGCAGATAATT
CTTCCCCCCTCGGCGCCGAAACCGCCGCGGCACGGACACGGATATCAACA
CCGACATCGACATTGACAACCCCTTTAACCGGCAGCGAGAGCGGTGGCGG
TGGCGCGGAAGCTCCCCGTTGGCCGCACGCGCTAGAGCTTCTGGCGCAGA
TGGAGGAGCGAGGCGTGCGGCCAGACGTGGTGACATTCAACAGCATCATC
AACGTTCTGCGATGGGGGGGGCAGGGCGAGCTGGCGCTTGACGTTTTGGA
AGGGATGAAGAGGGCGAGCGGCGGGAGGGGGGGGGCGCGGCGGCAGGGCG
GTGGGATGGGGGAGGAGGGTGGGGAGGAAGGCGTCGTTGTTCGGCCAGAT
GTGATTACGTACAATCGGGCGATTGCTGCGTGCGCTGCGGTCGAGGAGGG
CTCTGGGTGAGCGGAGCTTAGTAGGTCATGTTGTATGGTGTATGTATGTA
TACATGTATAGATGTATGTATACATGTATTATTAGCAGTCGTGGATGATG
GTCCGGGGCACATAGAATACACGACCTCATTCTGAAACTCAGTCGAATAC
TTTCAAATTTTTTTGTGGCGAATACGTCAATTATTCGTATTTGTCCGGGG
GGGCGAATATTTTACACAGACACAGACATGCATACCCACACTTATATATG
TATTGTTTTTTGGGTTTAACTGTGTGATAACGACGACGACGACGACGACG
ATGATGATTATGATGTTGGCACGTTGCGGATGGGTAGTGTAGTCACATAT
ATATATATATATGGTGAATCGTTCGGCGTCTTGTTGGAGCTATCAAACCA
CGCATATTTAGTTTACTTGTATGATATGATATATTATGATATGATATGGT
GGGGTGATGATTGATTTTTTTTTTTTAGTGTGTTATTTCTGGAGACGCGT
AAACCTCGCTCAGCGCGCCGTGTCGGAGATAGCATGTCTTATATAATGAC
ATTTCTCGACGGACGAGAGCTATCGTCTCAAAACCGAAGCAAGAAGCTTT
GGCGTTACGAGCGCCGCCGGCGCTGAAGTAGTTGGATCTCAGGTATAGGG
TGATCTTATCTTATGTTTTGTTTTGTACGGCCTTCTCTCTCGCTCGCCGG
CTTTTTTGTTGTTGAATGTTAGTGTGCTCTCGTCTCGGGGTCATGTGTTA
TTAATACTTGATATATATATATTTCTCCTTTCGGGCGTATCGCTATCCAT
GATGGACGTTTCCGGCATCGCGGTCGGTCCGTCGGTCGGGGTGAAACGAA
ACGGCATTTGTTCTGACGAATCAGGGCCGAGTGGCAGAAGGCGTGTGATC
TGCTCGCCGAGATGCGACGCAAGGGTCTGAAGCCGGATCTGTACAGCTAC
ACTTCCGCGATACATGCGTGTGCCAAGGCGGGACAATCTTCAGAGGCTGT
GCGTCTGCTGAGGGCCATGGAGAATAACCAGGTACTG back to topCoding sequence (CDS) from alignment at H-paniculata_contig18179:836..4622+ >mRNA_H-paniculata_contig18179.4414.1 ID=mRNA_H-paniculata_contig18179.4414.1|Name=mRNA_H-paniculata_contig18179.4414.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2388bp|location=Sequence derived from alignment at H-paniculata_contig18179:836..4622+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAGCTGTGAACGAGGCAGGGCTCGTACCGGATATTCTTATGCTCTC
GGCCGCCGTGGAGGCGTGCTCGAATGCGGGTGACGGGGAAGGAGCAGTGC
ACTTCTATGACCAGGCGATTAGGCTGGGGTTTGCTCCGGATGAAGGCATG
TATCAAGAGATGACAGCTGTGAACGAGGCAGGGCTCGTACCGGATATTCT
TATGCTCTCGGCCGCCGTGGAGGCGTGCTCGAATGCGGGTGACGGGGAAG
GAGCAGTGCACTTCTATGACCAGGCGATTAGGCTGGGGTTTGCTCCGGAT
GAAGGCATGTATCAAGAGGGCATCATAGCGTACAGCAACTCGGGCAAATG
GATCGAGGCCCGCGATCTCGCTCTGCAGTGGCGCGAGCGAGCGGCATCAT
AGCGTACAGCAACTCGGGCAAATGGATCGAGGCCCGCGATCTCGCTCTGC
AGTGGCGCGAGCGAGCTGGTCTGGCATCATCACCATCACCATCATCATCG
TTATCGTCATCATCCAATGACACGAATACTTCTGGTGGTGGTGGGGGTGG
TGAGATTGGCTTGTTGGCGCCCTGTTTGCCCCCTCCCCCCGCAGCGTGCA
ACACGGCCCTGATTAAGGCAATGGGGAAGGCCGGAAGGCCGGACGAGGCG
CTAGCTTGGATTAGAGATACAGCGAAATGCACGCTTGCCGCGACCGCGGC
CGCGGCAGAGGCGGAGGCCTCGGCAGGGTCGGCCGTGACGGTTTCAGAAA
CGACGGTTTCAAGATCGGGAATTACCTTGGATCACTCTTCATTTTTGGCG
GCCTTGTCTGCGTGCTCGAGGGTCGGGGAGTGGGAGTTGGCTTTGCAAGT
GCTGCACGAGATGGATGTCGTTGGGATTAAGCCGGAAACTAGCGCCTACA
ATACTGCACTCGCCGGTATGTATGTATGTATGTATGTATGTGTTGGTCTG
GCATCATCACCATCACCATCATCATCGTTATCGTCATCATCCAATGACAC
GAATACTTCTGGTGGTGGTGGGGGTGGTGAGATTGGCTTGTTGGCGCCCT
GTTTGCCCCCTCCCCCCGCAGCGTGCAACACGGCCCTGATTAAGGCAATG
GGGAAGGCCGGAAGGCCGGACGAGGCGCTAGCTTGGATTAGAGATACAGC
GAAATGCACGCTTGCCGCGACCGCGGCCGCGGCAGAGGCGGAGGCCTCGG
CAGGGTCGGCCGTGACGGTTTCAGAAACGACGGTTTCAAGATCGGGAATT
ACCTTGGATCACTCTTCATTTTTGGCGGCCTTGTCTGCGTGCTCGAGGGT
CGGGGAGTGGGAGTTGGCTTTGCAAGTGCTGCACGAGATGGATGTCGTTG
GGATTAAGCCGGAAACTAGCGCCTACAATACTGCACTCGCCGGTATGTAT
GTATGTATGTATGTATGTGTCGAGAGCGGTGGCGGTGGCGCGGAAGCTCC
CCGTTGGCCGCACGCGCTAGAGCTTCTGGCGCAGATGGAGGAGCGAGGCG
TGCGGCCAGACGTGGTGACATTCAACAGCATCATCAACGTTCTGCGATGG
GGGGGGCAGGGCGAGCTGGCGCTTGACGTTTTGGAAGGGATGAAGAGGGC
GAGCGGCGGGAGGGGGGGGGCGCGGCGGCAGGGCGGTGGGATGGGGGAGG
AGGGTGGGGAGGAAGGCGTCGTTGTTCGGCCAGATGTGATTACGTACAAT
CGGGCGATTGCTGCGTGCGCTGCGGTCGAGGAGGGCTCTGGCGAGAGCGG
TGGCGGTGGCGCGGAAGCTCCCCGTTGGCCGCACGCGCTAGAGCTTCTGG
CGCAGATGGAGGAGCGAGGCGTGCGGCCAGACGTGGTGACATTCAACAGC
ATCATCAACGTTCTGCGATGGGGGGGGCAGGGCGAGCTGGCGCTTGACGT
TTTGGAAGGGATGAAGAGGGCGAGCGGCGGGAGGGGGGGGGCGCGGCGGC
AGGGCGGTGGGATGGGGGAGGAGGGTGGGGAGGAAGGCGTCGTTGTTCGG
CCAGATGTGATTACGTACAATCGGGCGATTGCTGCGTGCGCTGCGGTCGA
GGAGGGCTCTGGGGCCGAGTGGCAGAAGGCGTGTGATCTGCTCGCCGAGA
TGCGACGCAAGGGTCTGAAGCCGGATCTGTACAGCTACACTTCCGCGATA
CATGCGTGTGCCAAGGCGGGACAATCTTCAGAGGCTGTGCGTCTGCTGAG
GGCCATGGAGAATAACCAGGTACTGGGCCGAGTGGCAGAAGGCGTGTGAT
CTGCTCGCCGAGATGCGACGCAAGGGTCTGAAGCCGGATCTGTACAGCTA
CACTTCCGCGATACATGCGTGTGCCAAGGCGGGACAATCTTCAGAGGCTG
TGCGTCTGCTGAGGGCCATGGAGAATAACCAGGTACTG back to top
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