mRNA_H-paniculata_contig1817.4413.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1817.4413.1
Unique NamemRNA_H-paniculata_contig1817.4413.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1817.4413.1 vs. uniprot
Match: A0A6H5JPK1_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK1_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.850e-23
Identity = 48/100 (48.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:    1 RLLANQLEHHPQRLSPAKMSDCNTRLEVLGWTIDTAALTLAYPPHKLAKLKQPMHEWPLSRKQATITEVQKLIGKLLHVSQVVRPGKFFVKRMSQLLGLP 300
            RL   +    P   +  K +  +TR+E+LGW IDT ALT++    K+AK++  + EWP+ R+ AT+TEV+ L+GKLLH+ +VVRPGKFFV+R+   LGLP
Sbjct:  670 RLFGTRNSGEPPLFAREKTTSWDTRMEMLGWVIDTVALTISVSQEKVAKMRAMLAEWPVERRVATVTEVRSLLGKLLHLCEVVRPGKFFVRRILNQLGLP 769          
BLAST of mRNA_H-paniculata_contig1817.4413.1 vs. uniprot
Match: V4B2J2_LOTGI (Uncharacterized protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4B2J2_LOTGI)

HSP 1 Score: 55.1 bits (131), Expect = 9.090e-7
Identity = 34/102 (33.33%), Postives = 59/102 (57.84%), Query Frame = 1
Query:    1 RLLANQLEHHPQRLSPAKMSDCNTRLEVLGWTIDTAALTLAYPPHKLAKLKQPMHEWPLSRKQATITEVQKLIGKLLHVSQVVRPGKFFVKRMSQLLGLPST 306
            R+L + L+      +P K     TR+  L  ++DT + T+   P +++++   +  W L+RK+AT+ ++Q L+GKL  +   VRPG+ FV R+  L  LP+T
Sbjct:   49 RVLGDLLKSCGIEEAPDKAVFPTTRMVFLCVSVDTQSTTMEVTPERVSEILALVESW-LTRKRATLKDLQSLLGKLHFICNCVRPGRIFVSRL--LNWLPTT 147          
BLAST of mRNA_H-paniculata_contig1817.4413.1 vs. uniprot
Match: A0A8H5HJ33_9AGAR (Uncharacterized protein n=1 Tax=Tricholomella constricta TaxID=117010 RepID=A0A8H5HJ33_9AGAR)

HSP 1 Score: 55.5 bits (132), Expect = 1.190e-6
Identity = 30/83 (36.14%), Postives = 49/83 (59.04%), Query Frame = 1
Query:   46 PAKMSDCNTRLEVLGWTIDTAALTLAYPPHKLAKLKQPMHEWPLSRKQATITEVQKLIGKLLHVSQVVRPGKFFVKRMSQLLG 294
            P+K  D ++ ++ LG+  D    T++ P  K  K  Q + +W  ++   T+ EVQKL GKLLHVS +V  G+ ++ R+  +LG
Sbjct:  498 PSKTVDFDSNVQYLGFIWDLQERTVSVPTVKKEKYLQAIRDWQ-AQPTHTLAEVQKLHGKLLHVSLIVPAGRAYLTRLEAMLG 579          
BLAST of mRNA_H-paniculata_contig1817.4413.1 vs. uniprot
Match: UPI00145864D0 (uncharacterized protein LOC117320473 n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI00145864D0)

HSP 1 Score: 55.1 bits (131), Expect = 1.530e-6
Identity = 29/79 (36.71%), Postives = 47/79 (59.49%), Query Frame = 1
Query:   43 SPAKMSDCNTRLEVLGWTIDTAALTLAYPPHKLAKLKQPMHEWPLSRKQATITEVQKLIGKLLHVSQVVRPGKFFVKRM 279
            S +K    +TR+  LG   DT +LTL  PP +L ++   +  W L + QAT+ ++Q L+GKL+ V+  VR  + F+ R+
Sbjct:  260 SQSKAVPPSTRMVFLGVLFDTESLTLEVPPFRLQEITDLVVVW-LEKDQATLQQLQSLLGKLMFVASCVRQSRIFISRL 337          
BLAST of mRNA_H-paniculata_contig1817.4413.1 vs. uniprot
Match: UPI001458F266 (uncharacterized protein LOC117326419 n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458F266)

HSP 1 Score: 55.1 bits (131), Expect = 1.580e-6
Identity = 29/79 (36.71%), Postives = 47/79 (59.49%), Query Frame = 1
Query:   43 SPAKMSDCNTRLEVLGWTIDTAALTLAYPPHKLAKLKQPMHEWPLSRKQATITEVQKLIGKLLHVSQVVRPGKFFVKRM 279
            S +K    +TR+  LG   DT +LTL  PP +L ++   +  W L + QAT+ ++Q L+GKL+ V+  VR  + F+ R+
Sbjct:  485 SQSKAVPPSTRMVFLGVLFDTESLTLEVPPFRLQEITDLVVVW-LEKDQATLQQLQSLLGKLMFVASCVRQSRIFISRL 562          
BLAST of mRNA_H-paniculata_contig1817.4413.1 vs. uniprot
Match: A0A8H5M436_9AGAR (Uncharacterized protein n=1 Tax=Tricholomella constricta TaxID=117010 RepID=A0A8H5M436_9AGAR)

HSP 1 Score: 54.3 bits (129), Expect = 3.090e-6
Identity = 31/83 (37.35%), Postives = 47/83 (56.63%), Query Frame = 1
Query:   46 PAKMSDCNTRLEVLGWTIDTAALTLAYPPHKLAKLKQPMHEWPLSRKQATITEVQKLIGKLLHVSQVVRPGKFFVKRMSQLLG 294
            P+K  D    ++ LG+  D    T++ P  K  K  Q + +W  +R   T+ +VQKL GKLLHVS VV  G+ ++ R+  +LG
Sbjct: 1022 PSKTVDFGFSVQYLGFIWDLQERTVSVPATKKEKYLQAIQDWN-TRTTHTLEDVQKLHGKLLHVSLVVAAGRAYLTRLEAMLG 1103          
BLAST of mRNA_H-paniculata_contig1817.4413.1 vs. uniprot
Match: UPI001E1D996C (uncharacterized protein LOC123556597 isoform X1 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D996C)

HSP 1 Score: 53.1 bits (126), Expect = 7.360e-6
Identity = 31/94 (32.98%), Postives = 49/94 (52.13%), Query Frame = 1
Query:   43 SPAKMSDCNTRLEVLGWTIDTAALTLAYPPHKLAKLKQPMHEWPLSRKQATITEVQKLIGKLLHVSQVVRPGKFFVKRM----SQLLGLPSTST 312
            SP K     T +  LG   DT  +T+   P +L +++  +H W L + QA+I EVQ L+GKL  +   V+  + F+ R+     QL  + ST +
Sbjct:  323 SPNKSCPPTTTMSFLGVLFDTIKMTMEITPERLTEIRYLVHSW-LFKDQASIKEVQSLLGKLNFIGACVKSSRVFISRLLNWLKQLYVMDSTDS 415          
BLAST of mRNA_H-paniculata_contig1817.4413.1 vs. uniprot
Match: A0A8H5HF92_9AGAR (Peptidase_M43 domain-containing protein n=1 Tax=Tricholomella constricta TaxID=117010 RepID=A0A8H5HF92_9AGAR)

HSP 1 Score: 53.1 bits (126), Expect = 7.820e-6
Identity = 31/83 (37.35%), Postives = 47/83 (56.63%), Query Frame = 1
Query:   46 PAKMSDCNTRLEVLGWTIDTAALTLAYPPHKLAKLKQPMHEWPLSRKQATITEVQKLIGKLLHVSQVVRPGKFFVKRMSQLLG 294
            P+K  D    ++ LG+  D    T++ P  K  K  Q + +W  +R   T+ EVQKL GKLLHVS +V  G+ ++ R+  +LG
Sbjct:  868 PSKTVDFAFSVQYLGFIWDLQERTVSVPTVKKEKYLQAIWDWK-ARTTHTLEEVQKLHGKLLHVSLIVPAGRAYLTRLEAMLG 949          
BLAST of mRNA_H-paniculata_contig1817.4413.1 vs. uniprot
Match: A0A1C7M7Y0_GRIFR (Uncharacterized protein n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7M7Y0_GRIFR)

HSP 1 Score: 52.4 bits (124), Expect = 1.420e-5
Identity = 27/70 (38.57%), Postives = 42/70 (60.00%), Query Frame = 1
Query:   88 GWTIDTAALTLAYPPHKLAKLKQPMHEWPLSRKQATITEVQKLIGKLLHVSQVVRPGKFFVKRMSQLLGL 297
            G+  + +  T++ PP K +K    + EW  SR   T+ EVQKL GKLLH + VVR G+ ++  +  +LG+
Sbjct:  526 GFRWNISEQTVSIPPEKKSKYLAAIQEWRTSRTH-TLREVQKLYGKLLHTTLVVREGRAYLTSLESMLGI 594          
BLAST of mRNA_H-paniculata_contig1817.4413.1 vs. uniprot
Match: K0RUC8_THAOC (Uncharacterized protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RUC8_THAOC)

HSP 1 Score: 51.2 bits (121), Expect = 3.650e-5
Identity = 27/95 (28.42%), Postives = 48/95 (50.53%), Query Frame = 1
Query:   13 NQLEHHPQRLSPAKMSDCN--TRLEVLGWTIDTAALTLAYPPHKLAKLKQPMHEWPLSRKQATITEVQKLIGKLLHVSQVVRPGKFFVKRMSQLL 291
            N     P  L   +  DC+  T   +LGW IDT A+T+  PPH+L +L + +   P ++K+ ++ +  K++G+L  +S  +   +     M   L
Sbjct:  798 NVHRREPVSLKKLRQGDCSWSTVKLILGWVIDTVAMTIHLPPHRLERLGEILASIPATQKRTSVKKWHKVLGELRSMSLALPGARNLFSHMQHAL 892          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1817.4413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JPK1_9PHAE2.850e-2348.00Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
V4B2J2_LOTGI9.090e-733.33Uncharacterized protein n=1 Tax=Lottia gigantea Ta... [more]
A0A8H5HJ33_9AGAR1.190e-636.14Uncharacterized protein n=1 Tax=Tricholomella cons... [more]
UPI00145864D01.530e-636.71uncharacterized protein LOC117320473 n=1 Tax=Pecte... [more]
UPI001458F2661.580e-636.71uncharacterized protein LOC117326419 n=1 Tax=Pecte... [more]
A0A8H5M436_9AGAR3.090e-637.35Uncharacterized protein n=1 Tax=Tricholomella cons... [more]
UPI001E1D996C7.360e-632.98uncharacterized protein LOC123556597 isoform X1 n=... [more]
A0A8H5HF92_9AGAR7.820e-637.35Peptidase_M43 domain-containing protein n=1 Tax=Tr... [more]
A0A1C7M7Y0_GRIFR1.420e-538.57Uncharacterized protein n=1 Tax=Grifola frondosa T... [more]
K0RUC8_THAOC3.650e-528.42Uncharacterized protein n=2 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1817contigH-paniculata_contig1817:23889..24206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929412.856667-CDS-H-paniculata_contig1817:23888..242061622929412.856667-CDS-H-paniculata_contig1817:23888..24206Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1817 23889..24206 -
1691480850.4223573-CDS-H-paniculata_contig1817:23888..242061691480850.4223573-CDS-H-paniculata_contig1817:23888..24206Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1817 23889..24206 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1817.4413.1prot_H-paniculata_contig1817.4413.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1817 23889..24206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1817.4413.1

>prot_H-paniculata_contig1817.4413.1 ID=prot_H-paniculata_contig1817.4413.1|Name=mRNA_H-paniculata_contig1817.4413.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
RLLANQLEHHPQRLSPAKMSDCNTRLEVLGWTIDTAALTLAYPPHKLAKL
KQPMHEWPLSRKQATITEVQKLIGKLLHVSQVVRPGKFFVKRMSQLLGLP
STSTWS
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mRNA from alignment at H-paniculata_contig1817:23889..24206-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1817.4413.1 ID=mRNA_H-paniculata_contig1817.4413.1|Name=mRNA_H-paniculata_contig1817.4413.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=318bp|location=Sequence derived from alignment at H-paniculata_contig1817:23889..24206- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGATTGCTTGCTAATCAATTAGAACACCACCCACAACGCTTGTCCCCAGC TAAGATGTCAGACTGTAACACACGCCTAGAAGTCCTCGGATGGACGATCG ACACGGCAGCGTTAACCCTCGCATATCCGCCACACAAATTAGCAAAACTC AAGCAGCCCATGCATGAATGGCCGCTGTCACGAAAACAAGCCACAATCAC TGAAGTGCAGAAATTGATCGGCAAGCTACTTCACGTATCTCAAGTGGTAC GCCCGGGAAAATTTTTCGTAAAGCGGATGTCGCAGCTACTAGGACTACCT TCTACTTCGACATGGAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1817:23889..24206-

>mRNA_H-paniculata_contig1817.4413.1 ID=mRNA_H-paniculata_contig1817.4413.1|Name=mRNA_H-paniculata_contig1817.4413.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig1817:23889..24206- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGATTGCTTGCTAATCAATTAGAACACCACCCACAACGCTTGTCCCCAGC
TAAGATGTCAGACTGTAACACACGCCTAGAAGTCCTCGGATGGACGATCG
ACACGGCAGCGTTAACCCTCGCATATCCGCCACACAAATTAGCAAAACTC
AAGCAGCCCATGCATGAATGGCCGCTGTCACGAAAACAAGCCACAATCAC
TGAAGTGCAGAAATTGATCGGCAAGCTACTTCACGTATCTCAAGTGGTAC
GCCCGGGAAAATTTTTCGTAAAGCGGATGTCGCAGCTACTAGGACTACCT
TCTACTTCGACATGGAGCCGATTGCTTGCTAATCAATTAGAACACCACCC
ACAACGCTTGTCCCCAGCTAAGATGTCAGACTGTAACACACGCCTAGAAG
TCCTCGGATGGACGATCGACACGGCAGCGTTAACCCTCGCATATCCGCCA
CACAAATTAGCAAAACTCAAGCAGCCCATGCATGAATGGCCGCTGTCACG
AAAACAAGCCACAATCACTGAAGTGCAGAAATTGATCGGCAAGCTACTTC
ACGTATCTCAAGTGGTACGCCCGGGAAAATTTTTCGTAAAGCGGATGTCG
CAGCTACTAGGACTACCTTCTACTTCGACATGGAGC
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