prot_H-paniculata_contig1817.4412.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1817.4412.1
Unique Nameprot_H-paniculata_contig1817.4412.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length207
Homology
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BLAST of mRNA_H-paniculata_contig1817.4412.1 vs. uniprot
Match: A0A6H5K807_9PHAE (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K807_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 1.350e-43
Identity = 98/209 (46.89%), Postives = 121/209 (57.89%), Query Frame = 0 
Query:    1 MWCKFTKHHAQQGAVTAVVWGSPSCDVASGTDSAGREDAAGQIADASQAESXXXXXXXXXSAAGMRSCTGAWKYNAEELTRGRRAETPFIQQCDLVFPLPPPAGDEGSGQEVDVNGRHA---EEEKQIEVFVRKQLGEHCFYYRARGPLSALLTQPLLGTCVLQGNFCALAVNAPSDQGNSWAILPGGTLVLSLDRETFQARRNDNTLC 206
            MW  F+ H+ Q+G VTAVVWG+P    A+G                              S A +R  + A   +AE LTRGRRA+TPFIQQCDLVFPLP   G+       D   R     E E++ + FV + LG+  FYYRARGPLS LL +  L + VL+G F ALA+NAPSD GNS+AILPGG LVLSLDRE+FQA  +   +C
Sbjct:    1 MWQDFSAHNTQRGDVTAVVWGAPGARPATGE-----------------------------STATVRPSSAAGAVDAEALTRGRRADTPFIQQCDLVFPLPDQDGESDGHDHGDTQERQQKRLEMEERAKAFVVRALGK-TFYYRARGPLSVLLRERFLDSYVLKGGFSALALNAPSDHGNSFAILPGGVLVLSLDRESFQASISGFRIC 179
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BLAST of mRNA_H-paniculata_contig1817.4412.1 vs. uniprot
Match: A0A2K5DQC4_AOTNA (Ribonuclease P/MRP subunit p40 n=1 Tax=Aotus nancymaae TaxID=37293 RepID=A0A2K5DQC4_AOTNA)

HSP 1 Score: 55.5 bits (132), Expect = 1.300e-5
Identity = 23/60 (38.33%), Postives = 38/60 (63.33%), Query Frame = 0 
Query:  138 FYYRARGPLSALLTQPLLGTCVLQGNFCALAVNAPSDQGNSWAILPGGTLVLSLDRETFQ 197
            +Y+    PL   +T   + T + +G+ CAL  N   D+ N+ A+LP GTL+LSLD++T++
Sbjct:   56 YYFVKNLPLHEFITHEFISTFIKKGSCCALTYNTNIDEDNTVALLPNGTLILSLDKDTYE 115
[Close]
BLAST of mRNA_H-paniculata_contig1817.4412.1 vs. uniprot
Match: A0A8C4PW73_EPTBU (Ribonuclease P/MRP 40 subunit n=2 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4PW73_EPTBU)

HSP 1 Score: 53.9 bits (128), Expect = 4.400e-5
Identity = 26/60 (43.33%), Postives = 42/60 (70.00%), Query Frame = 0 
Query:  139 YYRARG-PLSALLTQPLLGTCVLQGNFCALAVNAPSDQGNSWAILPGGTLVLSLDRETFQ 197
            YY  RG PL+ALL +  +   V +G+ CAL+ +   DQ +S+A+LP G+L+LSL ++T++
Sbjct:   63 YYLVRGLPLTALLQEDFIERFVRRGSVCALSYDTRIDQDDSFALLPPGSLLLSLQKDTYE 122
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1817.4412.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K807_9PHAE1.350e-4346.89Cyclic nucleotide-binding domain-containing protei... [more]
A0A2K5DQC4_AOTNA1.300e-538.33Ribonuclease P/MRP subunit p40 n=1 Tax=Aotus nancy... [more]
A0A8C4PW73_EPTBU4.400e-543.33Ribonuclease P/MRP 40 subunit n=2 Tax=Eptatretus b... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013893Ribonuclease P, Rpp40PFAMPF08584Ribonuc_P_40coord: 148..197
e-value: 2.1E-9
score: 37.1
IPR013893Ribonuclease P, Rpp40PANTHERPTHR15396FAMILY NOT NAMEDcoord: 128..197

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1817contigH-paniculata_contig1817:19611..21413 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1817.4412.1mRNA_H-paniculata_contig1817.4412.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1817 19274..21413 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1817.4412.1 ID=prot_H-paniculata_contig1817.4412.1|Name=mRNA_H-paniculata_contig1817.4412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=207bp
MWCKFTKHHAQQGAVTAVVWGSPSCDVASGTDSAGREDAAGQIADASQAE
SSPAAATAASSAAGMRSCTGAWKYNAEELTRGRRAETPFIQQCDLVFPLP
PPAGDEGSGQEVDVNGRHAEEEKQIEVFVRKQLGEHCFYYRARGPLSALL
TQPLLGTCVLQGNFCALAVNAPSDQGNSWAILPGGTLVLSLDRETFQARR
NDNTLC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013893RNase_P_Rpp40