mRNA_H-paniculata_contig1817.4412.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1817.4412.1
Unique NamemRNA_H-paniculata_contig1817.4412.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1817.4412.1 vs. uniprot
Match: A0A6H5K807_9PHAE (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K807_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 4.670e-42
Identity = 98/209 (46.89%), Postives = 121/209 (57.89%), Query Frame = 2 
Query:  338 MWCKFTKHHAQQGAVTAVVWGSPSCDVASGTDSAGREDAAGQIADASQAESXXXXXXXXXSAAGMRSCTGAWKYNAEELTRGRRAETPFIQQCDLVFPLPPPAGDEGSGQEVDVNGRHA---EEEKQIEVFVRKQLGEHCFYYRARGPLSALLTQPLLGTCVLQGNFCALAVNAPSDQGNSWAILPGGTLVLSLDRETFQARRNDNTLC 955
            MW  F+ H+ Q+G VTAVVWG+P    A+G                              S A +R  + A   +AE LTRGRRA+TPFIQQCDLVFPLP   G+       D   R     E E++ + FV + LG+  FYYRARGPLS LL +  L + VL+G F ALA+NAPSD GNS+AILPGG LVLSLDRE+FQA  +   +C
Sbjct:    1 MWQDFSAHNTQRGDVTAVVWGAPGARPATGE-----------------------------STATVRPSSAAGAVDAEALTRGRRADTPFIQQCDLVFPLPDQDGESDGHDHGDTQERQQKRLEMEERAKAFVVRALGK-TFYYRARGPLSVLLRERFLDSYVLKGGFSALALNAPSDHGNSFAILPGGVLVLSLDRESFQASISGFRIC 179
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BLAST of mRNA_H-paniculata_contig1817.4412.1 vs. uniprot
Match: A0A2K5DQC4_AOTNA (Ribonuclease P/MRP subunit p40 n=1 Tax=Aotus nancymaae TaxID=37293 RepID=A0A2K5DQC4_AOTNA)

HSP 1 Score: 55.5 bits (132), Expect = 4.980e-5
Identity = 23/60 (38.33%), Postives = 38/60 (63.33%), Query Frame = 2 
Query:  749 FYYRARGPLSALLTQPLLGTCVLQGNFCALAVNAPSDQGNSWAILPGGTLVLSLDRETFQ 928
            +Y+    PL   +T   + T + +G+ CAL  N   D+ N+ A+LP GTL+LSLD++T++
Sbjct:   56 YYFVKNLPLHEFITHEFISTFIKKGSCCALTYNTNIDEDNTVALLPNGTLILSLDKDTYE 115
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1817.4412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K807_9PHAE4.670e-4246.89Cyclic nucleotide-binding domain-containing protei... [more]
A0A2K5DQC4_AOTNA4.980e-538.33Ribonuclease P/MRP subunit p40 n=1 Tax=Aotus nancy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1817contigH-paniculata_contig1817:19274..21413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibonuclease P, Rpp40
Ec32 orthologEc-04_004570.1
Exons3
Model size958
Cds size621
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1817.4412.1prot_H-paniculata_contig1817.4412.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1817 19611..21413 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929412.7528038-UTR-H-paniculata_contig1817:19273..196101622929412.7528038-UTR-H-paniculata_contig1817:19273..19610Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1817 19274..19610 +
1691480850.3862808-UTR-H-paniculata_contig1817:19273..196101691480850.3862808-UTR-H-paniculata_contig1817:19273..19610Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1817 19274..19610 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929412.7658021-CDS-H-paniculata_contig1817:19610..198291622929412.7658021-CDS-H-paniculata_contig1817:19610..19829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1817 19611..19829 +
1691480850.3946228-CDS-H-paniculata_contig1817:19610..198291691480850.3946228-CDS-H-paniculata_contig1817:19610..19829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1817 19611..19829 +
1622929412.7849998-CDS-H-paniculata_contig1817:20126..202671622929412.7849998-CDS-H-paniculata_contig1817:20126..20267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1817 20127..20267 +
1691480850.4046001-CDS-H-paniculata_contig1817:20126..202671691480850.4046001-CDS-H-paniculata_contig1817:20126..20267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1817 20127..20267 +
1622929412.8020303-CDS-H-paniculata_contig1817:21152..214131622929412.8020303-CDS-H-paniculata_contig1817:21152..21413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1817 21153..21413 +
1691480850.414613-CDS-H-paniculata_contig1817:21152..214131691480850.414613-CDS-H-paniculata_contig1817:21152..21413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1817 21153..21413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1817.4412.1

>prot_H-paniculata_contig1817.4412.1 ID=prot_H-paniculata_contig1817.4412.1|Name=mRNA_H-paniculata_contig1817.4412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=207bp
MWCKFTKHHAQQGAVTAVVWGSPSCDVASGTDSAGREDAAGQIADASQAE
SSPAAATAASSAAGMRSCTGAWKYNAEELTRGRRAETPFIQQCDLVFPLP
PPAGDEGSGQEVDVNGRHAEEEKQIEVFVRKQLGEHCFYYRARGPLSALL
TQPLLGTCVLQGNFCALAVNAPSDQGNSWAILPGGTLVLSLDRETFQARR
NDNTLC*
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mRNA from alignment at H-paniculata_contig1817:19274..21413+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1817.4412.1 ID=mRNA_H-paniculata_contig1817.4412.1|Name=mRNA_H-paniculata_contig1817.4412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2140bp|location=Sequence derived from alignment at H-paniculata_contig1817:19274..21413+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGAGAACCTCCGACAAACCACGACATCAGGGTTGGCCACACTGAATCG
TAGGTCTCCAAGTTCCAAGCACAGTCCCAAGTTCCAAGCGCAAAAGTTGC
AAAGGCCAGATGATCAAACACTATTGTCAACCTATCAGTGTGGACTGTAG
CATCTCACTATTTTTCGCACGTGCTGGTACCCAGTAGAACCTCTGCTCTA
TCCGGTGTGCAAGAGGGAGCAACCTGTGAACTACCGCAAGCAGTCCACCA
CAGTCGAATTGAGTCGCATCTGCCCGTACGTGATATAAAGGACAACCACT
TAAGGCTTCATCCTATCTCCTTGCAGAGGAGGTTAGCATGTGGTGCAAAT
TCACCAAGCACCATGCCCAACAGGGCGCTGTCACGGCGGTCGTGTGGGGG
TCGCCGAGCTGCGATGTTGCTAGCGGCACTGATTCGGCGGGTCGAGAGGA
TGCCGCTGGGCAAATAGCCGACGCCTCTCAGGCTGAATCCTCTCCTGCTG
CTGCTACTGCTGCCTCTTCCGCTGCTGGCATGCGTTCCTGTACGGGTGCT
TGGAAGGTGTTGAGAAAAAAACAGCTCATTGGGAGACATCCGTCAGCTAT
AAGTACCTGAGTCTATGTTGCTGTGTGTTCTACAGGCAATGTATGTACAC
TGCTGTAACCTAATAACCGGATACGCAATAAGAGACTGTTATTTGCGTGT
TGCAGATACATGGCGAAGAAGACGTGCTAAAAGAATTCGTTACTCACAGC
GTAGTCAGTAGTAACGCATGCTTTGCACAAGGAAGTCTCTCGCGTACTGC
CTACCGTTTTCCCCGAACTCACAACTACCTGCCGTGTGTTCGGTCTTCGA
CAGTATAACGCAGAGGAGCTGACTCGTGGGAGGCGAGCTGAGACTCCTTT
TATTCAGCAATGCGACCTCGTATTTCCGTTGCCTCCGCCCGCTGGAGATG
AGGGTAGCGGCCAAGAGGTGGATGTGAATGGGCGCCACGCGGAGGTACAC
CGTTCTGTCTGACCCACTAATACATTTCGAGTTTAACTAATTTTGTCATA
TCGTTTTCGTTATTTAGGTTGCTTATGCAGTCAAATTGCGCCAGAGCTTG
TTCACCCACACCATTGTGCCATGCTCGTACTGTCGAGGGTAATCTTATGG
TATGTTCACCACGAAACGCTACTGTAAGCATGGTGTTTGCTCAAATCAAG
ATGGATTCTCAAAACAAAACGCTCTATCGATTCTGGTTTCCCCCGATTTT
GACATCTAAGATACGTGATGTAGATAATGCACCTCGATGATTAACTAATG
TCATGGGTCGTGGGAACAACACACCGTTTTCATTTTTTTCGAATTGGATA
ATTGATATCCGGCCGGATACAATGAATTGACCGATGCTTGCAATTTTACT
GACCTACGTCCCACTAAAAAACTGAAAACTTCATGGTGTTCCTACGACCA
AGGACTTTGACTCATGTTCGAGGTGCGTTGTCTGAATCGCCTGTCTTGCA
GCTCAAAGTTGGGAGGAACTGAAAATAGGTGATTGAAGGCTCGTTCTGAT
TTGATCGAACACCGTGTATACCACGGGTTTCCGAACAATTCAATGAAACA
AAGTGATCACATCCCCAGTGCCAGCAGACCTCTCGGGCCGTGCCTACCTC
CTTGGTACCTTGTCGTTACATGATGTCACCAAACATCAACAAGCCAGAAC
AATCGTGGCGGGGGTGGCCGTTTGTACTACAACAAAACAAGTTGTTTATT
TGTCCAGATTCATGTGGCGTTTGCTAGAAGATGCACAACGTTGTGATGCT
TCTTCCTTCGAACAGCGAACCTTTCACTGCTTTCTATCGCCCCCCACCTC
ATCTCCCCGGTCTGCCCGCCCTTGGACAGGAGGAGAAACAGATAGAAGTT
TTTGTGAGAAAGCAACTTGGTGAACATTGCTTCTACTATCGTGCGCGAGG
GCCGCTGTCTGCGCTTTTAACCCAACCGCTTCTCGGAACTTGCGTGCTCC
AAGGAAATTTCTGTGCGTTGGCTGTTAACGCTCCCAGCGACCAGGGCAAT
TCGTGGGCAATCCTTCCCGGCGGGACTCTGGTGCTGTCGCTGGACCGCGA
GACATTTCAGGCAAGAAGAAATGATAATACGTTATGTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1817:19274..21413+

>mRNA_H-paniculata_contig1817.4412.1 ID=mRNA_H-paniculata_contig1817.4412.1|Name=mRNA_H-paniculata_contig1817.4412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1242bp|location=Sequence derived from alignment at H-paniculata_contig1817:19274..21413+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGTGCAAATTCACCAAGCACCATGCCCAACAGGGCGCTGTCACGGC
GGTCGTGTGGGGGTCGCCGAGCTGCGATGTTGCTAGCGGCACTGATTCGG
CGGGTCGAGAGGATGCCGCTGGGCAAATAGCCGACGCCTCTCAGGCTGAA
TCCTCTCCTGCTGCTGCTACTGCTGCCTCTTCCGCTGCTGGCATGCGTTC
CTGTACGGGTGCTTGGAAGATGTGGTGCAAATTCACCAAGCACCATGCCC
AACAGGGCGCTGTCACGGCGGTCGTGTGGGGGTCGCCGAGCTGCGATGTT
GCTAGCGGCACTGATTCGGCGGGTCGAGAGGATGCCGCTGGGCAAATAGC
CGACGCCTCTCAGGCTGAATCCTCTCCTGCTGCTGCTACTGCTGCCTCTT
CCGCTGCTGGCATGCGTTCCTGTACGGGTGCTTGGAAGTATAACGCAGAG
GAGCTGACTCGTGGGAGGCGAGCTGAGACTCCTTTTATTCAGCAATGCGA
CCTCGTATTTCCGTTGCCTCCGCCCGCTGGAGATGAGGGTAGCGGCCAAG
AGGTGGATGTGAATGGGCGCCACGCGGAGTATAACGCAGAGGAGCTGACT
CGTGGGAGGCGAGCTGAGACTCCTTTTATTCAGCAATGCGACCTCGTATT
TCCGTTGCCTCCGCCCGCTGGAGATGAGGGTAGCGGCCAAGAGGTGGATG
TGAATGGGCGCCACGCGGAGGAGGAGAAACAGATAGAAGTTTTTGTGAGA
AAGCAACTTGGTGAACATTGCTTCTACTATCGTGCGCGAGGGCCGCTGTC
TGCGCTTTTAACCCAACCGCTTCTCGGAACTTGCGTGCTCCAAGGAAATT
TCTGTGCGTTGGCTGTTAACGCTCCCAGCGACCAGGGCAATTCGTGGGCA
ATCCTTCCCGGCGGGACTCTGGTGCTGTCGCTGGACCGCGAGACATTTCA
GGCAAGAAGAAATGATAATACGTTATGTTAAGAGGAGAAACAGATAGAAG
TTTTTGTGAGAAAGCAACTTGGTGAACATTGCTTCTACTATCGTGCGCGA
GGGCCGCTGTCTGCGCTTTTAACCCAACCGCTTCTCGGAACTTGCGTGCT
CCAAGGAAATTTCTGTGCGTTGGCTGTTAACGCTCCCAGCGACCAGGGCA
ATTCGTGGGCAATCCTTCCCGGCGGGACTCTGGTGCTGTCGCTGGACCGC
GAGACATTTCAGGCAAGAAGAAATGATAATACGTTATGTTAA
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