prot_H-paniculata_contig18164.4410.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig18164.4410.1
Unique Nameprot_H-paniculata_contig18164.4410.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length414
Homology
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BLAST of mRNA_H-paniculata_contig18164.4410.1 vs. uniprot
Match: D7FT47_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT47_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 1.710e-58
Identity = 180/435 (41.38%), Postives = 230/435 (52.87%), Query Frame = 0 
Query:    1 RLRQGKHDEASFDLRDAVASGLGNVEEAKALLVEAEAGSSLAGCQDPEAKGRELLRAGDSRQAAKYFREAVSRARRCLRLQRPMSDSSPDDGDQALST---LARNLRMEAITVARAGDAASAENLLRGGLRELQAEGRIAADGGVRPRGEGGVLKAEGEGLVIAALGGLMAQQGKHREAVESLRAAASVLEEGIAAAD-DKNGNGNDGSATPAATSGATNTNSTGIASTSTRISSLKNALGGVLSSLGTSLLALEE----------SGTTAGLGSAVTAAVPAGGQTE-----PHGKDNNSSDXXXXXXXXXXXXXXXXXXXVLD--DHVXXXXXXXXXXXXXXXXXXXXHEVEAVGQXXXXXXXXXQSAKILDALSEAHARAGRWELARSSAEQSLTAWRSLGDAGRTGAAASMLSLGHLVLQLHGVGAGLEEA 414
            R R G  D A  DLR ++A+G  + +EA+ALL+EAEAG++++ C DPEA+GRE LR G  R+AAK FR+A SRARR          +  + G+ A++T   L+RNLR+E I VA AGD  SAE LLR  LR+L+  G                   E EGL +AALG L+AQ+GKH +A+E LR A +VL+E IA    ++ G  N  + T A +S  T + + G      RI++L   L G L+ LGTSLLA E           S TT      VT  V  GG  +     P    ++                      VL     +                        AVG+         Q+AK+LD LSEA+ R  RWE AR +AEQSLTAWRSLG AGR GAAAS+LSLGHL+LQLHGVGAG EEA
Sbjct:  147 RFRLGLFDGACSDLRSSLAAGTSSGDEARALLLEAEAGAAMSSCPDPEAEGREHLRQGRGREAAKSFRDAASRARR------RKDAAGAEAGEGAVATTVALSRNLRLEGIAVAMAGDPPSAEMLLRTALRDLRVGGXXXXXXXXXX------XXXEEEGLTLAALGSLLAQRGKHADALEPLREAVAVLDEAIAGVSANEGGVANSSAGTNARSSPPTPSITEG------RITALTRTLTGTLAFLGTSLLAPEVQPSANYGSNGSSTTTTSSGGVTPGVMKGGAEKVTVPAPGFSCDDKGPIVADSGEAGSSKEADEAIDVLKRAHEMLKAETVAMATAGPGQKGGLAGVYSAVGESRGEADVRKQTAKVLDTLSEAYGREKRWERARLAAEQSLTAWRSLGVAGRVGAAASLLSLGHLLLQLHGVGAGFEEA 563
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18164.4410.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT47_ECTSI1.710e-5841.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..197
e-value: 9.9E-7
score: 30.0
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 50..384

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18164contigH-paniculata_contig18164:170..3347 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18164.4410.1mRNA_H-paniculata_contig18164.4410.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig18164 170..3347 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig18164.4410.1 ID=prot_H-paniculata_contig18164.4410.1|Name=mRNA_H-paniculata_contig18164.4410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=414bp
RLRQGKHDEASFDLRDAVASGLGNVEEAKALLVEAEAGSSLAGCQDPEAK
GRELLRAGDSRQAAKYFREAVSRARRCLRLQRPMSDSSPDDGDQALSTLA
RNLRMEAITVARAGDAASAENLLRGGLRELQAEGRIAADGGVRPRGEGGV
LKAEGEGLVIAALGGLMAQQGKHREAVESLRAAASVLEEGIAAADDKNGN
GNDGSATPAATSGATNTNSTGIASTSTRISSLKNALGGVLSSLGTSLLAL
EESGTTAGLGSAVTAAVPAGGQTEPHGKDNNSSDNKSHDAASGSTGNGNG
NGEVLDDHVVDSVATGATTAAAATAAATVHEVEAVGQQRQQQRQQQQSAK
ILDALSEAHARAGRWELARSSAEQSLTAWRSLGDAGRTGAAASMLSLGHL
VLQLHGVGAGLEEA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf