mRNA_H-paniculata_contig1815.4405.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1815.4405.1
Unique NamemRNA_H-paniculata_contig1815.4405.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1815.4405.1 vs. uniprot
Match: A0A6H5JVR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVR9_9PHAE)

HSP 1 Score: 367 bits (943), Expect = 1.150e-109
Identity = 256/580 (44.14%), Postives = 324/580 (55.86%), Query Frame = 2 
Query:  515 DTMRTVGDDVLAMVATYCDCKILCRLGAVSRRFRHIPYNDMLWKLRALDIMP-LAQVEAAKVALGFACYRHLIETLTRIGIPHGVLGFWRGDGRSTTADKTPLE--GLESTVGETSEGADGTDGRGELLRICFSSGGLLGESISPAGTSQAVFTIRISMVGQS-VKIGYFSLEDPNASPANLGGDG-GWIPGQTIPEAFLASAVPLPTPTERAPPVRISGENGFFLERYDGRKSRFTYLVPPPATAAVVDDHGHQYSAAEMATLDLCGLWCAPYGSHGLEIIQLSMDYPKSLASSKVAAVPAAVGPNLSSREEQSATAAAVMAGAQARRTMEEEPEPAGAR------FECTASHKTASSSSSVCTSAPADDGSVDDLVXXXXXXXXXXXXXXXXXXXXXXXXAAESQQGSDTAFGDKE-----ARERCNS-----NLNVRSEESEGKYNYPC-LCGIKVTGDANVPTGELSFVI-MGNSCDVEEKVEADRRPVVLFTSNGAVMANLSNRRSWITSWRKGRGQINRTPGQWSPEWVDVDFITYQPGGRCAFSVVFRQLSEAVRVILDFERVLGTREAWPEW 2185
            D  R + DD + +VA++  C  LC L  V RRF  +P+ D LW+LRALDI+P + QV +A   L    +R L+E  T IGIP GVLGFW+ +  +   D    +  GL+ T  +  E       RGELLRI   +GG L ESI+P+GT + +FTIR+S      +KIG+F LE  +A    +GGD   W+PG ++ EA       +P  T R P +R SG   FFLER DGR  R+  L  PPA++           AA  A  +LCGLWCAPYGSHGLEIIQLS D                  P+ S  EE   TAAA +  A   +        AG R         +++ +    S SVCTS PA D    +         XXXXXXXXXXXXXXXXX +    G   +  D       AR + NS          S    G  + P  L G KVTGD NVP G+ SFVI +    DV+E++ +D RPVV F   GAVMANL+NRR  I+ WRKGRGQINR PG+WSPEWVDV+F+ Y+ G RCAFSV+FRQ ++AVRV++DFER LG  E WP+W
Sbjct:   55 DKTRLLDDDTINVVASFASCHDLCVLAEVCRRFSPLPFCDDLWELRALDILPSVPQVHSAMSQLKLTSFRQLVEAFTLIGIPGGVLGFWQAEAPTLAWDVQQQQQGGLDGTTVQQPEA------RGELLRITLEAGGFLCESIAPSGTRRRIFTIRVSKTPTGRIKIGFFCLEKESA--LTIGGDNDSWVPGDSMAEALARYTFAIPGSTRRTP-IRASGTKAFFLERNDGRTCRYVKLTAPPASSPG--------GAAAGAVKNLCGLWCAPYGSHGLEIIQLSTD------------------PSCSPNEE---TAAAAVKAATVVKLSSLSQSWAGGRGGRRGSVSGSSTSRVTDGSESVCTSTPATDADGSEADSCDEAGGXXXXXXXXXXXXXXXXXXSSDGHGDIESVLDDGCLASIARRKGNSLHHADTATAGSGAGAGDASVPSQLFGFKVTGDDNVPAGKTSFVIDLSTDFDVDEELRSDSRPVVTFLPTGAVMANLANRRQQISCWRKGRGQINRVPGRWSPEWVDVEFVEYRAGSRCAFSVIFRQPNQAVRVVMDFERALGCEEEWPQW 596
[Close]
BLAST of mRNA_H-paniculata_contig1815.4405.1 vs. uniprot
Match: D7FWS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS5_ECTSI)

HSP 1 Score: 309 bits (791), Expect = 2.240e-89
Identity = 222/512 (43.36%), Postives = 279/512 (54.49%), Query Frame = 2 
Query:  701 LGFACYRHLIETLTRIGIPHGVLGFWRGDGRSTTADKTPLE--GLESTVGETSEGADGTDGRGELLRICFSSGGLLGESISPAGTSQAVFTIRISMVGQS-VKIGYFSLEDPNASPANLGGDG-GWIPGQTIPEAFLASAVPLPTPTERAPPVRISGENGFFLERYDGRKSRFTYLVPPPATAAVVDDHGHQYSAAEMATLDLCGLWCAPYGSHGLEIIQLSMDYPKSLASSKVAAVPAAVGPNLSSREEQSATAAAVMAGAQARRTMEEEPEPAGARFECTASHKTASSSSSVCTSAPADD------GSVDDLVXXXXXXXXXXXXXXXXXXXXXXXXAAESQQGSDTAFGDKEARERCNS-----NLNVRSEESEGKYNYPC-LCGIKVTGDANVPTGELSFVI-MGNSCDVEEKVEADRRPVVLFTSNGAVMANLSNRRSWITSWRKGRGQINRTPGQWSPEWVDVDFITYQPGGRCAFSVVFRQLSEAVRVILDFERVLGTREAWPEW 2185
            L    +R L+E  T IGIP GVLGFW+ +  + + D    +  GL+    +  E       RGELLRI   +GG L ESI+P GT + +FTIR+S      + IG+F LE    S   +GGD   W+PG ++ EA       +P  T+R P +R SG   FFLER DGR  R+  L  PPA++  V        AA  A  +LCGLWCAPYGSHGLEIIQLS D P      + AA         ++  + S+ + +   G            P G+   C+ S  T   S SVCTS PA D      GS D+      XXXXXXXXXXXXX               D       AR + NS          S    G  + P  L G KVTGD NVP G+ SFVI +    DV+E++ +D RPVV F   GAVMANL+NRR  I+ WR GRGQINR PG+WSPEWVDV+F+ Y+ G RCAFSV+FRQ ++AVRV++DFER LG  E WP+W
Sbjct:    4 LKLTSFRQLVEAFTLIGIPGGVLGFWQAEAPTLSWDVQQQQQGGLDGATVQEREA------RGELLRITLEAGGFLCESIAPNGTRRRIFTIRVSKTPTDRINIGFFCLE--KESSLTIGGDDDSWVPGDSMAEALARYTFAVPGSTKRTP-MRASGTKAFFLERNDGRTCRYVKLTAPPASSPGV-------VAAAGAVKNLCGLWCAPYGSHGLEIIQLSTD-PSCSPDEETAAAXXXXXXKAATVAKLSSLSQSWAGGRGG---------PRGSVSGCSTSRMT-DGSESVCTSTPATDADGSEAGSCDEAGGSSEXXXXXXXXXXXXXSSDGDGDGDVESVLDDVCLASI-ARRKGNSLHHADTGTAGSGAGAGDASVPSQLFGFKVTGDDNVPAGKTSFVIDLSTDFDVDEELRSDSRPVVTFLPTGAVMANLANRRQQISCWRNGRGQINRVPGRWSPEWVDVEFVEYRAGSRCAFSVIFRQPNQAVRVVMDFERALGCEEEWPQW 487
[Close]
BLAST of mRNA_H-paniculata_contig1815.4405.1 vs. uniprot
Match: A0A7S2F4S0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F4S0_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.070e-23
Identity = 54/120 (45.00%), Postives = 80/120 (66.67%), Query Frame = 2 
Query: 1799 YPCLCGIKVTGDANVPTGELSFVI-MGNSCDVEEKVEADRRPVVLFTSNGAVMANLSNRRSWITSWRKGRGQINRTPGQWSPEWVDVDFITYQPGGRCAFSVVFRQLSEAVRVILDFERV 2155
            YP L G+KV GDANVPT +LSFV+ + +  D+  ++ +D R VV F  +G V+ +L+ R   I +W +G GQINR  G+W+PEWV +DFI Y    + A+S+V+ +  E +R ++DF RV
Sbjct:  197 YPRLEGMKVIGDANVPTSKLSFVVDLSDPSDISTRLASDTRQVVSFPPDGFVIMDLNRRERDIVAWYRGAGQINRQKGKWAPEWVGLDFIVYNKNSKAAYSLVWDEDDEELRHMIDFTRV 316
[Close]
BLAST of mRNA_H-paniculata_contig1815.4405.1 vs. uniprot
Match: A0A061QLQ6_9CHLO (Uncharacterized protein n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QLQ6_9CHLO)

HSP 1 Score: 99.0 bits (245), Expect = 1.850e-19
Identity = 61/141 (43.26%), Postives = 80/141 (56.74%), Query Frame = 2 
Query: 1808 LCGIKVTGDANVPTGELSFVIMGNSCDVEEKVEADRRPVVLFTSNGAVMANLSNRRSWITSWRKGRGQINRTPGQWSPEWVDVDFITYQPGGRCAFSVVFRQLSEAVRVILDFERVLGTREAWP--EW*SVLFGSAARFSG 2224
            L G+K+TGD NVP  +LSFV      D  E V AD RP++ F S G  + NL +R   +     G+GQINR P  W+PEWVDV  ITY  G R  FS+++  + E  R I+DF   L + +AW    W +V    AAR +G
Sbjct:   86 LVGLKLTGDPNVPATKLSFVAALTEPDDPEGVLADLRPIIAFPSTGPAVVNLQDRE--VAGLFLGKGQINRDPDVWAPEWVDVRLITYS-GQRKGFSILWHDMGEFWRHIIDFAP-LESPDAWAGAAW-AVAEAKAARSAG 221
[Close]
BLAST of mRNA_H-paniculata_contig1815.4405.1 vs. uniprot
Match: A0A8J9WRD6_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WRD6_9CHLO)

HSP 1 Score: 74.3 bits (181), Expect = 5.610e-10
Identity = 45/130 (34.62%), Postives = 67/130 (51.54%), Query Frame = 2 
Query: 1793 YNYPCLCGIKVTGDANVPTGELSFV------IMGNSCDVEEKVEAD------RRPVVLFTSNGAVMANLSNRRSWITSWRKGRGQINRTPGQWSPEWVDVDFITYQPGGRCAFSVVFRQLSEAVRVILDF 2146
            + Y  L G+K+TGD NVP G L+F       I+G     EE+   D       RP+V+  +   V+ +L  R   + +   GRGQIN  P +WSPEW +V  + Y  G +  FS+++  L    R ++DF
Sbjct:  295 FAYGKLEGLKITGDPNVPAGNLTFEVWSQYPIVGRYDGFEEEELFDGQIMEINRPIVMHVAGQRVLVDLDERP--VAARYFGRGQINADPSRWSPEWEEVQLLVYD-GDQPVFSILWSDLGSPYRHMMDF 421
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1815.4405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JVR9_9PHAE1.150e-10944.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWS5_ECTSI2.240e-8943.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2F4S0_9STRA1.070e-2345.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A061QLQ6_9CHLO1.850e-1943.26Uncharacterized protein n=2 Tax=Tetraselmis sp. GS... [more]
A0A8J9WRD6_9CHLO5.610e-1034.62Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1815contigH-paniculata_contig1815:1647..7972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionF-box domain
Ec32 orthologEc-16_004220.1
Exons4
Model size3658
Cds size1785
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1815.4405.1prot_H-paniculata_contig1815.4405.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1815 3117..6389 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929412.042343-UTR-H-paniculata_contig1815:1646..31161622929412.042343-UTR-H-paniculata_contig1815:1646..3116Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1815 1647..3116 -
1691480850.040867-UTR-H-paniculata_contig1815:1646..31161691480850.040867-UTR-H-paniculata_contig1815:1646..3116Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1815 1647..3116 -
1622929412.092331-UTR-H-paniculata_contig1815:6389..63941622929412.092331-UTR-H-paniculata_contig1815:6389..6394Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1815 6390..6394 -
1691480850.0731106-UTR-H-paniculata_contig1815:6389..63941691480850.0731106-UTR-H-paniculata_contig1815:6389..6394Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1815 6390..6394 -
1622929412.1041927-UTR-H-paniculata_contig1815:7555..76111622929412.1041927-UTR-H-paniculata_contig1815:7555..7611Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1815 7556..7611 -
1691480850.0831604-UTR-H-paniculata_contig1815:7555..76111691480850.0831604-UTR-H-paniculata_contig1815:7555..7611Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1815 7556..7611 -
1622929412.1144602-UTR-H-paniculata_contig1815:7630..79721622929412.1144602-UTR-H-paniculata_contig1815:7630..7972Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1815 7631..7972 -
1691480850.091224-UTR-H-paniculata_contig1815:7630..79721691480850.091224-UTR-H-paniculata_contig1815:7630..7972Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1815 7631..7972 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929412.0604615-CDS-H-paniculata_contig1815:3116..43471622929412.0604615-CDS-H-paniculata_contig1815:3116..4347Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1815 3117..4347 -
1691480850.054124-CDS-H-paniculata_contig1815:3116..43471691480850.054124-CDS-H-paniculata_contig1815:3116..4347Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1815 3117..4347 -
1622929412.0784004-CDS-H-paniculata_contig1815:5835..63891622929412.0784004-CDS-H-paniculata_contig1815:5835..6389Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1815 5836..6389 -
1691480850.061753-CDS-H-paniculata_contig1815:5835..63891691480850.061753-CDS-H-paniculata_contig1815:5835..6389Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1815 5836..6389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1815.4405.1

>prot_H-paniculata_contig1815.4405.1 ID=prot_H-paniculata_contig1815.4405.1|Name=mRNA_H-paniculata_contig1815.4405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=595bp
MRPVKYQRGPAGKSIQSPSRFIFDVATTAATAGSPKADTMRTVGDDVLAM
VATYCDCKILCRLGAVSRRFRHIPYNDMLWKLRALDIMPLAQVEAAKVAL
GFACYRHLIETLTRIGIPHGVLGFWRGDGRSTTADKTPLEGLESTVGETS
EGADGTDGRGELLRICFSSGGLLGESISPAGTSQAVFTIRISMVGQSVKI
GYFSLEDPNASPANLGGDGGWIPGQTIPEAFLASAVPLPTPTERAPPVRI
SGENGFFLERYDGRKSRFTYLVPPPATAAVVDDHGHQYSAAEMATLDLCG
LWCAPYGSHGLEIIQLSMDYPKSLASSKVAAVPAAVGPNLSSREEQSATA
AAVMAGAQARRTMEEEPEPAGARFECTASHKTASSSSSVCTSAPADDGSV
DDLVSVDDTIHIEDFVEFHDQSDNRDESAAESQQGSDTAFGDKEARERCN
SNLNVRSEESEGKYNYPCLCGIKVTGDANVPTGELSFVIMGNSCDVEEKV
EADRRPVVLFTSNGAVMANLSNRRSWITSWRKGRGQINRTPGQWSPEWVD
VDFITYQPGGRCAFSVVFRQLSEAVRVILDFERVLGTREAWPEW*
back to top

mRNA from alignment at H-paniculata_contig1815:1647..7972-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1815.4405.1 ID=mRNA_H-paniculata_contig1815.4405.1|Name=mRNA_H-paniculata_contig1815.4405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6326bp|location=Sequence derived from alignment at H-paniculata_contig1815:1647..7972- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGACACTGTTATCTACCACCCGAGTTGTGTAAGAGATTATTAATAAATCA
ACGCGTTGTACCACGTAATTTGCGTTGAAACATGTCAGAGACAAGTATGT
CTTGTGTGCGCGGAAACAACGACTGGTTGTTGACTTTGCTGTCTGTTCCC
CTGGATATTTCGGAGATTAGCTGACTCACGACATACGAAACACATTTTAG
ATGCTCGAGTCGCAACAAGCAGCTGCTGTGGAAACTGGCACCGGGTTTAC
ACCCAAGTCAAGCTGATCAGCGCAGAGCAAGCAGAGAGCAAGCAGAGAGC
AAGCAGAGAGCAAGCAGAGAGCAAGCAGAGAGCAAGCAGAGAGCAAGCAG
AGAGCAAGCAGAAAGCCATAGCCGATAGCTAGGTGAACACGTGATCAAGT
GACGGAGCTTCTACCAGGTCAGTTTGGTTTGGTTGCGCTGTGTTTTTTAC
CCGGGGCAGGTAGGGGCGGTGAGATTTGCCACGCAGCACGGATGAATCGG
AACTCATGTCCAACATGGTAGTCCTTCCAATGCCAGCTGTACTGTAGTGG
TCATGTCCAAGTAAACTGTCGAGTTGTACTGTCTCTGCATGGCTTGTCTA
TCCCATCGTTTAAGACGACAGCGCCCCTTTACCAGAAATTCTTCACGTGT
CGGGTGGTTCATTATCTCAACGACTTTTATGTCAGCCGTCGTCAATGACC
ACCAGGTGTGATGTATATTGAAGCAGAAACGACTTTCGTGCTGACGGTAC
TGCTGTGGGGTGTGCCGCATTAGTGTATGGCAACAAGAACTCACAGACCT
TGCATGCGGACGTTTTGAACAATCGGGCTCATGCTCTCAATGTGCTAATC
GAGGCTTTGCCTGTTTACTTCCGAAAATGACAAAAAAGCATGCACCTCTT
CACCGTTTGTAGCGACCTTGACCTCAGACATTCTATTTTGAAAAGTGTAT
TATTTCAACTCCAGCGATGACCGTAGTCAGTCCATACGACAGCGATGTAA
TCGACACAGAGTACAGACAAGTCATTTACAGTTTGTATGGCACACATAGT
CCACTCCCTCCTTTTTTTGCTCTAATTTTGATCATGAGCGTACACAACTG
AAGTGTGAGGATAGCTGCATGACCCCAACAAGGGCACATGAGGTACTTCA
AAGTTCCACTAACTGTCCCAACTAGGTTGACAAATGAAGGAGGCTTCGCT
GTGGGTGATGTATATATATATATTCTGTTGCTGTCGCTCGTTTCATGTCA
AATTTATTTGATGTAAACGTGGAGTACACACGCTAATGATACGGTGATAC
TTGCTTGTGAAGGCCGTCATTTCGTACCTCGTGGAAGAGGTGCGAGAAGT
CCTGGTACTCGGTCTACTTGGTCATGATGGAGTCAAAATGCAAGTCATTT
GAGCAGGATCCTGTTGATCTATTAGGCAGCATACCCAAATATCCTTCAAG
TCAATCGAAAGTCATTTCACTCCCTTTCTTGAAAATGAGTGTACACAACT
GAAGTTTGATGCCCGCTTTGCCCTACCCACCGTCCCTACCCTTTCCTCAA
ATCCCTTTCTCTCCCACACGTGGGCCAGCCATCATGCGCCCCGTCAAATA
TCAGCGGGGTCCAGCTGGTAAAAGCATCCAGTCGCCATCCCGATTTATTT
TTGACGTCGCTACCACGGCAGCAACGGCTGGAAGCCCGAAAGCAGACACG
ATGCGGACAGTGGGAGACGACGTCCTGGCTATGGTGGCCACCTACTGCGA
CTGCAAGATCCTCTGCAGGTTGGGCGCCGTCAGCCGGCGCTTCCGCCACA
TCCCATACAATGATATGCTGTGGAAGCTCCGCGCCTTGGATATCATGCCC
CTCGCGCAGGTGGAGGCTGCGAAGGTGGCGCTGGGATTCGCATGCTACCG
CCACCTCATAGAGACGCTTACACGAATCGGTATCCCACATGGTGTGCTCG
GGTTCTGGAGGGGCGATGGGCGGTCGACGACGGCGGACAAGACGCCACTA
GAGGGACTCGAGTCCACAGTGGGGGAGACAAGCGAGGGGGCGGACGGGAC
GGATGGTCGTGGCGAGCTGTTGCGGATTTGTTTTTCGTCCGGAGGTCTTC
TGGGGGAATCCATTTCGCCAGCGGGTACTTCTCAAGCGTGAGTCGAGTCG
GGGTGTGCAAGTGCACTAAAAATTCACGCGTGAATGATATACGGGTGGTA
TGGTGAGGTCCTGGAGTAAGGTACTGTACACTTCGCACAGATACGTCGTA
CATTTTCATCACGCGATATTTTTTTGTTTGAATATATAACAACTCTCACA
GTTCATCACTTCCGAGGTTGCCTCGGTGGCATTTTCCCCGTGAATCTGGT
GTTGCACGTGACGTGAACGATGGAGGTTAAGGGAAAGAGGCAAGAATTTC
ACTTTTTATGAGTTCATAACTGTAGACATAATAACGCCCGTGATACTAGT
TTTAAAACGAAACCAATATGGACTACAATACGCCGCCCAATGAACTCGGA
ACACGGTTACAAACGTCATTTTAGGAGGTTTCAGATTTCATAATACAACA
GTTTTTCCACACCGCAGTCTTCGGCCAGTGTTGGGTTTGAGCACTTTTTT
TCAGTGCGCCGATAGACGCTGTTTCAAGATAATAATGAATGTCCTGCTTC
CAACACTTTTTCGTGCTGGATCTATGATCTTGACCAATGTTTTGGCAGAT
CGAACTAGAATGCCTAGCAGCATGCAGGACTGCGAAGATGATAGAATCGT
GTTTTATTATCTAGAGAGAGAGTGAAGCGCTGTTCATATTTGGGAGCAGA
GTGAGCTTGGATGGGAGAAGTCAAGCACCAGCTTGTCTCCGCTGCCGTGT
ATACCACCCCCTTCCCTCCTCCCCCTCCCAGCAAACGCGTTGACGTTACG
GCTGTAACAACAAGATTAGAGAACTAAGAGTGACCTCTGAATCATGACCA
TCACATAGCTAAATGTCACACGCAATTTGGTTCAACGAGCTAAACCAACG
ACTTGACACAAGTTCTAAAACATTTGAAGAAACCTTGTCCTCAGTACTGA
TGTATCGATCACGACTGACTGTGTGGTGTTACCAGAGACTACCGCGCTAA
TGTTATGGCTGTGACAATAGGACTGGAAGCTAGTCGTACCCTCAAAGAGA
CTTGATGTTCACGAGGTTGATTTTAATGAGCAAAATTGACTGGTTGATGC
ACATTAGATTTTTTTCTGGAGATTTGCTCTAGTCATACGTGACCCATGTT
TGGCAGAGAGCGGTACCGAGCACAACTGATGTTACCATGTTGTTTGTTTG
CAACGGCAAAAATGGTGCCTGTGTAGTCCCAATTCCGTTATCAAAGAACA
AACAGACAACGAGTTGGGCAGTGAGATGTGTCCGAGCATTACCAGGAATA
AGCAGCGCAAGTGTGCCACGAGGCCCAGAAAGCTTTGAATTTCCAGCTGC
AGATACGCGCCACGTATCCACCGCGTTTAGGCAATTGCGTTTGGTACAGG
ATCCGCCTGTCGTTTTGTTGTGCACGTGAAGATGCACGCCTTTTCACTGA
AGGAGCTTGCGCCACTTTCCGACAATGCTCCCTACCCACCTGTTACTCAT
TCCAATCTCCGAACTATACCTACAGAGTGTTCACGATCAGGATTTCGATG
GTCGGGCAGAGCGTAAAGATTGGCTATTTCTCCTTGGAAGATCCAAATGC
GTCGCCTGCCAACCTGGGCGGCGACGGCGGTTGGATCCCTGGCCAGACAA
TCCCAGAGGCTTTCCTCGCGTCCGCTGTGCCATTACCAACGCCAACAGAG
CGCGCGCCGCCTGTCCGCATTTCGGGTGAGAATGGTTTCTTCCTTGAGCG
CTACGACGGCCGCAAGTCCAGATTCACCTATCTGGTACCCCCTCCCGCCA
CAGCTGCTGTCGTCGATGATCATGGTCATCAGTATTCAGCAGCCGAAATG
GCGACGCTAGATCTGTGTGGGTTATGGTGCGCACCTTACGGCAGCCATGG
CTTGGAGATCATCCAGCTCTCGATGGATTATCCGAAGAGTTTGGCATCAT
CGAAGGTGGCTGCTGTTCCGGCTGCGGTAGGTCCAAATTTGTCGTCGAGA
GAAGAGCAGTCGGCGACGGCGGCAGCGGTGATGGCGGGTGCACAGGCGAG
GCGAACGATGGAGGAAGAACCCGAGCCTGCTGGAGCTCGTTTCGAGTGCA
CTGCTTCCCACAAGACGGCGAGTTCGAGCTCCAGTGTATGTACGTCCGCA
CCAGCTGACGACGGCAGTGTTGATGACCTGGTCTCCGTTGATGACACCAT
TCACATCGAAGATTTTGTTGAGTTTCATGATCAGTCAGATAACAGAGATG
AGTCCGCAGCCGAGAGCCAGCAGGGCTCGGACACCGCCTTCGGAGACAAA
GAAGCAAGAGAGCGTTGCAACAGCAACCTGAATGTGCGCAGCGAAGAGAG
CGAAGGCAAGTACAATTATCCATGCCTATGCGGCATCAAAGTGACCGGAG
ACGCAAACGTCCCCACGGGAGAACTGTCCTTCGTCATCATGGGTAACAGC
TGTGACGTCGAAGAGAAAGTAGAGGCCGACAGGCGGCCAGTTGTTCTCTT
TACCTCCAACGGTGCGGTGATGGCAAACCTCTCCAACCGGCGATCATGGA
TCACCTCGTGGCGCAAAGGCCGGGGACAAATCAATCGCACCCCGGGTCAG
TGGAGTCCCGAGTGGGTAGATGTTGATTTCATCACGTATCAACCGGGAGG
GCGATGTGCCTTCTCCGTTGTGTTCAGGCAGCTGTCCGAGGCCGTGAGAG
TTATTCTCGACTTCGAGCGGGTTTTGGGGACGAGGGAGGCATGGCCAGAG
TGGTAAAGTGTTTTGTTTGGAAGCGCCGCTCGCTTCTCGGGTGTTGCTTC
TGCGTCGGTGTTTTTGAGAAGATTGACGATTCTTTTGTCCTCTCCGCGGT
AGTGTGTCGTGTTTGCTCGGTTGCGCATATTTGTCGACGGATCGGTTAAT
GAGACAGGCAGTAACAACTGCAATCCACGGCCGGTTTTGCATTTTGCGGG
CGGTGTGTGCAAAATTTTCTGTGTGCATATTGCGTCGATTCCGCTAGATC
TGACTCCGATTCTTGCGGTTCTCTCGTGGTGTTGCAGTTTCTCCTCGGAT
TTGTTATATCAGTTCGTGTTGAGGGTTATGTATCGGAATTGCTACTGAGA
TCTACGCTTCTCATGAACGGGGCGCGATATTCTGTCTCTTCCTTTGATTT
CTTTTTTGTGCCACCTTTGGTGCGCTACTGTCTGAATGGTGAAGTACTAT
CTATCAATCTTGCATACCAGTACAATACAAGCTGTAGCTATCATGTATAT
GTTGAAAAATTCGATTTTCCAGTTACTAGAGATGTACACAAGATCGTGTG
ATTTTAGTACGGGACATTTGACACAGAAAACAAGTGCGGATATGTCATAA
TATTATATACCTGGTACCATGGTGTAGTTATTATGTTACGTCTCGATCCA
GCTGGTCGGAAGGAAGGAAATTGAAGTAAAAAAAATGAGTGTGTCACGTC
GCGCGTGTCTCCCTGCTCCCATCACGTGAGCGAGGAAAATTTACGTAGTT
CTGTACATTAATCCGAGGACGAAAGCACCGACCACAAGCAAGCCCAGAGA
ACCACTTGTTGCGTTCCCGACACTAACTTTGGAAGCGTTGGCCCAGGGAT
GGCGTGTTGCGGGGGACTGCGCCTGGATTCCCCGCGCACCGAATTAATTC
TGCCAGTCGTATTACTCACATAATAGATTGCTCGTCTTAAAATGTTCATC
TTGCCCCAGCCTGCCTCACGAGACGAATGGATCCCAGACACATCTAGGTA
CACCCGGTACCTTGGTGGGCTAAGAAAATCAGGTACACTGGGCCTTGGGT
GGGGATGCGCGCCCATCTCCGTACTACTGTGCATCGTAATTCGAGGCGAG
GAAAAAACTTTCATTTCCCCTGATTTTTGTGCCATGTCTGCTTTCTTATT
GCAATAAACTCAAGTGATGCCGCGATTATGATGCAATAAGTCCAAAAGAT
ATGACGTAAAATCGGTGTTTGCAGAACCTTGTGTTGATACTGACGGGACA
CCTTGCGATGAATTCGGCTGGTAACCCACCAATGACCATAAAATGCTGGA
TTATATACCACATCTTATTTTCCCTTTTTCATGTTTTTTTGCCCTAGACG
AGAAAGAGCCGCACACTCGTGTGCAGATCTGAGAAAGATCTATAATTATG
ATAATGCTGCCGAGTGAATGTGAAACTGGTTTGATCCATTTCGCCGCAAC
GCGTGTTTACTGAATCGATACGGCGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1815:1647..7972-

>mRNA_H-paniculata_contig1815.4405.1 ID=mRNA_H-paniculata_contig1815.4405.1|Name=mRNA_H-paniculata_contig1815.4405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3570bp|location=Sequence derived from alignment at H-paniculata_contig1815:1647..7972- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCCCCGTCAAATATCAGCGGGGTCCAGCTGGTAAAAGCATCCAGTC
GCCATCCCGATTTATTTTTGACGTCGCTACCACGGCAGCAACGGCTGGAA
GCCCGAAAGCAGACACGATGCGGACAGTGGGAGACGACGTCCTGGCTATG
GTGGCCACCTACTGCGACTGCAAGATCCTCTGCAGGTTGGGCGCCGTCAG
CCGGCGCTTCCGCCACATCCCATACAATGATATGCTGTGGAAGCTCCGCG
CCTTGGATATCATGCCCCTCGCGCAGGTGGAGGCTGCGAAGGTGGCGCTG
GGATTCGCATGCTACCGCCACCTCATAGAGACGCTTACACGAATCGGTAT
CCCACATGGTGTGCTCGGGTTCTGGAGGGGCGATGGGCGGTCGACGACGG
CGGACAAGACGCCACTAGAGGGACTCGAGTCCACAGTGGGGGAGACAAGC
GAGGGGGCGGACGGGACGGATGGTCGTGGCGAGCTGTTGCGGATTTGTTT
TTCGTCCGGAGGTCTTCTGGGGGAATCCATTTCGCCAGCGGGTACTTCTC
AAGCATGCGCCCCGTCAAATATCAGCGGGGTCCAGCTGGTAAAAGCATCC
AGTCGCCATCCCGATTTATTTTTGACGTCGCTACCACGGCAGCAACGGCT
GGAAGCCCGAAAGCAGACACGATGCGGACAGTGGGAGACGACGTCCTGGC
TATGGTGGCCACCTACTGCGACTGCAAGATCCTCTGCAGGTTGGGCGCCG
TCAGCCGGCGCTTCCGCCACATCCCATACAATGATATGCTGTGGAAGCTC
CGCGCCTTGGATATCATGCCCCTCGCGCAGGTGGAGGCTGCGAAGGTGGC
GCTGGGATTCGCATGCTACCGCCACCTCATAGAGACGCTTACACGAATCG
GTATCCCACATGGTGTGCTCGGGTTCTGGAGGGGCGATGGGCGGTCGACG
ACGGCGGACAAGACGCCACTAGAGGGACTCGAGTCCACAGTGGGGGAGAC
AAGCGAGGGGGCGGACGGGACGGATGGTCGTGGCGAGCTGTTGCGGATTT
GTTTTTCGTCCGGAGGTCTTCTGGGGGAATCCATTTCGCCAGCGGGTACT
TCTCAAGCAGTGTTCACGATCAGGATTTCGATGGTCGGGCAGAGCGTAAA
GATTGGCTATTTCTCCTTGGAAGATCCAAATGCGTCGCCTGCCAACCTGG
GCGGCGACGGCGGTTGGATCCCTGGCCAGACAATCCCAGAGGCTTTCCTC
GCGTCCGCTGTGCCATTACCAACGCCAACAGAGCGCGCGCCGCCTGTCCG
CATTTCGGGTGAGAATGGTTTCTTCCTTGAGCGCTACGACGGCCGCAAGT
CCAGATTCACCTATCTGGTACCCCCTCCCGCCACAGCTGCTGTCGTCGAT
GATCATGGTCATCAGTATTCAGCAGCCGAAATGGCGACGCTAGATCTGTG
TGGGTTATGGTGCGCACCTTACGGCAGCCATGGCTTGGAGATCATCCAGC
TCTCGATGGATTATCCGAAGAGTTTGGCATCATCGAAGGTGGCTGCTGTT
CCGGCTGCGGTAGGTCCAAATTTGTCGTCGAGAGAAGAGCAGTCGGCGAC
GGCGGCAGCGGTGATGGCGGGTGCACAGGCGAGGCGAACGATGGAGGAAG
AACCCGAGCCTGCTGGAGCTCGTTTCGAGTGCACTGCTTCCCACAAGACG
GCGAGTTCGAGCTCCAGTGTATGTACGTCCGCACCAGCTGACGACGGCAG
TGTTGATGACCTGGTCTCCGTTGATGACACCATTCACATCGAAGATTTTG
TTGAGTTTCATGATCAGTCAGATAACAGAGATGAGTCCGCAGCCGAGAGC
CAGCAGGGCTCGGACACCGCCTTCGGAGACAAAGAAGCAAGAGAGCGTTG
CAACAGCAACCTGAATGTGCGCAGCGAAGAGAGCGAAGGCAAGTACAATT
ATCCATGCCTATGCGGCATCAAAGTGACCGGAGACGCAAACGTCCCCACG
GGAGAACTGTCCTTCGTCATCATGGGTAACAGCTGTGACGTCGAAGAGAA
AGTAGAGGCCGACAGGCGGCCAGTTGTTCTCTTTACCTCCAACGGTGCGG
TGATGGCAAACCTCTCCAACCGGCGATCATGGATCACCTCGTGGCGCAAA
GGCCGGGGACAAATCAATCGCACCCCGGGTCAGTGGAGTCCCGAGTGGGT
AGATGTTGATTTCATCACGTATCAACCGGGAGGGCGATGTGCCTTCTCCG
TTGTGTTCAGGCAGCTGTCCGAGGCCGTGAGAGTTATTCTCGACTTCGAG
CGGGTTTTGGGGACGAGGGAGGCATGGCCAGAGTGGTAAAGTGTTCACGA
TCAGGATTTCGATGGTCGGGCAGAGCGTAAAGATTGGCTATTTCTCCTTG
GAAGATCCAAATGCGTCGCCTGCCAACCTGGGCGGCGACGGCGGTTGGAT
CCCTGGCCAGACAATCCCAGAGGCTTTCCTCGCGTCCGCTGTGCCATTAC
CAACGCCAACAGAGCGCGCGCCGCCTGTCCGCATTTCGGGTGAGAATGGT
TTCTTCCTTGAGCGCTACGACGGCCGCAAGTCCAGATTCACCTATCTGGT
ACCCCCTCCCGCCACAGCTGCTGTCGTCGATGATCATGGTCATCAGTATT
CAGCAGCCGAAATGGCGACGCTAGATCTGTGTGGGTTATGGTGCGCACCT
TACGGCAGCCATGGCTTGGAGATCATCCAGCTCTCGATGGATTATCCGAA
GAGTTTGGCATCATCGAAGGTGGCTGCTGTTCCGGCTGCGGTAGGTCCAA
ATTTGTCGTCGAGAGAAGAGCAGTCGGCGACGGCGGCAGCGGTGATGGCG
GGTGCACAGGCGAGGCGAACGATGGAGGAAGAACCCGAGCCTGCTGGAGC
TCGTTTCGAGTGCACTGCTTCCCACAAGACGGCGAGTTCGAGCTCCAGTG
TATGTACGTCCGCACCAGCTGACGACGGCAGTGTTGATGACCTGGTCTCC
GTTGATGACACCATTCACATCGAAGATTTTGTTGAGTTTCATGATCAGTC
AGATAACAGAGATGAGTCCGCAGCCGAGAGCCAGCAGGGCTCGGACACCG
CCTTCGGAGACAAAGAAGCAAGAGAGCGTTGCAACAGCAACCTGAATGTG
CGCAGCGAAGAGAGCGAAGGCAAGTACAATTATCCATGCCTATGCGGCAT
CAAAGTGACCGGAGACGCAAACGTCCCCACGGGAGAACTGTCCTTCGTCA
TCATGGGTAACAGCTGTGACGTCGAAGAGAAAGTAGAGGCCGACAGGCGG
CCAGTTGTTCTCTTTACCTCCAACGGTGCGGTGATGGCAAACCTCTCCAA
CCGGCGATCATGGATCACCTCGTGGCGCAAAGGCCGGGGACAAATCAATC
GCACCCCGGGTCAGTGGAGTCCCGAGTGGGTAGATGTTGATTTCATCACG
TATCAACCGGGAGGGCGATGTGCCTTCTCCGTTGTGTTCAGGCAGCTGTC
CGAGGCCGTGAGAGTTATTCTCGACTTCGAGCGGGTTTTGGGGACGAGGG
AGGCATGGCCAGAGTGGTAA
back to top