mRNA_H-paniculata_contig1815.4406.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1815.4406.1
Unique NamemRNA_H-paniculata_contig1815.4406.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1815.4406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1815contigH-paniculata_contig1815:10277..11439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1163
Cds size1011
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1815.4406.1prot_H-paniculata_contig1815.4406.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1815 10328..11338 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929411.9522192-UTR-H-paniculata_contig1815:10276..103271622929411.9522192-UTR-H-paniculata_contig1815:10276..10327Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1815 10277..10327 +
1691480850.0094745-UTR-H-paniculata_contig1815:10276..103271691480850.0094745-UTR-H-paniculata_contig1815:10276..10327Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1815 10277..10327 +
1622929411.9882462-UTR-H-paniculata_contig1815:11338..114391622929411.9882462-UTR-H-paniculata_contig1815:11338..11439Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1815 11339..11439 +
1691480850.0305147-UTR-H-paniculata_contig1815:11338..114391691480850.0305147-UTR-H-paniculata_contig1815:11338..11439Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1815 11339..11439 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929411.969135-CDS-H-paniculata_contig1815:10327..113381622929411.969135-CDS-H-paniculata_contig1815:10327..11338Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1815 10328..11338 +
1691480850.0210354-CDS-H-paniculata_contig1815:10327..113381691480850.0210354-CDS-H-paniculata_contig1815:10327..11338Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1815 10328..11338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1815.4406.1

>prot_H-paniculata_contig1815.4406.1 ID=prot_H-paniculata_contig1815.4406.1|Name=mRNA_H-paniculata_contig1815.4406.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=337bp
MSLSDLALPAAPEIGGGWRDGVTWSSREENRRILGGLAHGDDGDVKRALR
LLTPVCTSAGAMQSPLARRGVADSRVAAKVAPQAPIYDATLLLAIPSSAW
RNARFPRQRCCLPLLPPVPCSADHRSATRAAASLCLTSHVQLLASQAVQP
SVYHLLFAGLEQAPPPAARRPSLWCHPRRYRSVPPAPERSAAKSPISFLH
KFACAGCGLIPYAGATPPIPLPIPIIRCSWPSAPTYCVWSPICAALHAGI
FKCRPHPTASSDGVGDAAGCTSPTVYCAWLGAPPCHVWPLVHVALSASVV
VCRPRQSALPRTPASSPRFVASSREAAAVDIRLCHV*
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mRNA from alignment at H-paniculata_contig1815:10277..11439+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1815.4406.1 ID=mRNA_H-paniculata_contig1815.4406.1|Name=mRNA_H-paniculata_contig1815.4406.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1163bp|location=Sequence derived from alignment at H-paniculata_contig1815:10277..11439+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCAATTGTCAAAGGCAAATATAATGATGTATGATTAGAGCTCTACCTC
CATGTCATTGTCGGACCTTGCTCTTCCTGCCGCGCCCGAGATCGGCGGTG
GCTGGCGAGACGGCGTAACCTGGTCTTCCCGGGAAGAAAATCGACGAATA
TTAGGAGGCCTTGCGCATGGCGACGATGGTGATGTCAAACGGGCTCTGCG
ACTGTTAACGCCGGTTTGCACCAGTGCAGGTGCCATGCAATCCCCCTTGG
CGAGGAGAGGCGTGGCCGACTCCCGGGTGGCTGCGAAGGTGGCTCCTCAG
GCCCCAATCTACGACGCGACCTTACTGCTTGCCATTCCGTCATCGGCCTG
GCGCAATGCGCGCTTCCCAAGACAGCGGTGCTGTCTGCCACTCCTTCCTC
CGGTCCCTTGCTCCGCAGACCACCGATCGGCCACGCGGGCTGCTGCGTCG
CTGTGTCTCACGTCCCATGTCCAACTGCTGGCATCGCAGGCGGTGCAGCC
GAGTGTATACCACCTGCTGTTTGCTGGGCTTGAGCAGGCGCCCCCGCCCG
CCGCGCGTCGCCCTAGTCTGTGGTGTCATCCACGCCGGTATCGTAGTGTG
CCGCCCGCTCCCGAGCGCTCTGCCGCGAAATCCCCCATCTCCTTTCTCCA
CAAATTCGCATGCGCCGGTTGCGGTCTCATCCCATACGCCGGAGCCACAC
CGCCCATTCCCCTTCCCATTCCAATCATACGCTGTAGTTGGCCAAGCGCG
CCTACCTACTGTGTCTGGTCGCCCATTTGCGCCGCTCTCCATGCCGGAAT
CTTCAAGTGCCGCCCGCATCCAACCGCCAGCAGTGACGGCGTGGGCGACG
CCGCTGGTTGTACATCGCCTACTGTTTATTGCGCTTGGCTCGGCGCTCCC
CCCTGTCATGTCTGGCCTCTAGTCCACGTGGCCCTTTCCGCCAGTGTTGT
AGTATGCCGACCGCGTCAAAGCGCTCTGCCACGAACGCCTGCATCCTCCC
CCCGCTTCGTGGCATCCTCCCGGGAGGCCGCAGCAGTCGACATTCGTCTC
TGCCATGTCTGAGAGCCCTGTTGCCACCACTGACTTTCCAGACGTCGTGC
TCGCCCTCCCCGTCCAGACTCCAATCCTTGTGATCACCTCACGGTCAGGC
TCGTACTCCTCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig1815:10277..11439+

>mRNA_H-paniculata_contig1815.4406.1 ID=mRNA_H-paniculata_contig1815.4406.1|Name=mRNA_H-paniculata_contig1815.4406.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2022bp|location=Sequence derived from alignment at H-paniculata_contig1815:10277..11439+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATTGTCGGACCTTGCTCTTCCTGCCGCGCCCGAGATCGGCGGTGG
CTGGCGAGACGGCGTAACCTGGTCTTCCCGGGAAGAAAATCGACGAATAT
TAGGAGGCCTTGCGCATGGCGACGATGGTGATGTCAAACGGGCTCTGCGA
CTGTTAACGCCGGTTTGCACCAGTGCAGGTGCCATGCAATCCCCCTTGGC
GAGGAGAGGCGTGGCCGACTCCCGGGTGGCTGCGAAGGTGGCTCCTCAGG
CCCCAATCTACGACGCGACCTTACTGCTTGCCATTCCGTCATCGGCCTGG
CGCAATGCGCGCTTCCCAAGACAGCGGTGCTGTCTGCCACTCCTTCCTCC
GGTCCCTTGCTCCGCAGACCACCGATCGGCCACGCGGGCTGCTGCGTCGC
TGTGTCTCACGTCCCATGTCCAACTGCTGGCATCGCAGGCGGTGCAGCCG
AGTGTATACCACCTGCTGTTTGCTGGGCTTGAGCAGGCGCCCCCGCCCGC
CGCGCGTCGCCCTAGTCTGTGGTGTCATCCACGCCGGTATCGTAGTGTGC
CGCCCGCTCCCGAGCGCTCTGCCGCGAAATCCCCCATCTCCTTTCTCCAC
AAATTCGCATGCGCCGGTTGCGGTCTCATCCCATACGCCGGAGCCACACC
GCCCATTCCCCTTCCCATTCCAATCATACGCTGTAGTTGGCCAAGCGCGC
CTACCTACTGTGTCTGGTCGCCCATTTGCGCCGCTCTCCATGCCGGAATC
TTCAAGTGCCGCCCGCATCCAACCGCCAGCAGTGACGGCGTGGGCGACGC
CGCTGGTTGTACATCGCCTACTGTTTATTGCGCTTGGCTCGGCGCTCCCC
CCTGTCATGTCTGGCCTCTAGTCCACGTGGCCCTTTCCGCCAGTGTTGTA
GTATGCCGACCGCGTCAAAGCGCTCTGCCACGAACGCCTGCATCCTCCCC
CCGCTTCGTGGCATCCTCCCGGGAGGCCGCAGCAGTCGACATTCGTCTCT
GCCATGTCTGAATGTCATTGTCGGACCTTGCTCTTCCTGCCGCGCCCGAG
ATCGGCGGTGGCTGGCGAGACGGCGTAACCTGGTCTTCCCGGGAAGAAAA
TCGACGAATATTAGGAGGCCTTGCGCATGGCGACGATGGTGATGTCAAAC
GGGCTCTGCGACTGTTAACGCCGGTTTGCACCAGTGCAGGTGCCATGCAA
TCCCCCTTGGCGAGGAGAGGCGTGGCCGACTCCCGGGTGGCTGCGAAGGT
GGCTCCTCAGGCCCCAATCTACGACGCGACCTTACTGCTTGCCATTCCGT
CATCGGCCTGGCGCAATGCGCGCTTCCCAAGACAGCGGTGCTGTCTGCCA
CTCCTTCCTCCGGTCCCTTGCTCCGCAGACCACCGATCGGCCACGCGGGC
TGCTGCGTCGCTGTGTCTCACGTCCCATGTCCAACTGCTGGCATCGCAGG
CGGTGCAGCCGAGTGTATACCACCTGCTGTTTGCTGGGCTTGAGCAGGCG
CCCCCGCCCGCCGCGCGTCGCCCTAGTCTGTGGTGTCATCCACGCCGGTA
TCGTAGTGTGCCGCCCGCTCCCGAGCGCTCTGCCGCGAAATCCCCCATCT
CCTTTCTCCACAAATTCGCATGCGCCGGTTGCGGTCTCATCCCATACGCC
GGAGCCACACCGCCCATTCCCCTTCCCATTCCAATCATACGCTGTAGTTG
GCCAAGCGCGCCTACCTACTGTGTCTGGTCGCCCATTTGCGCCGCTCTCC
ATGCCGGAATCTTCAAGTGCCGCCCGCATCCAACCGCCAGCAGTGACGGC
GTGGGCGACGCCGCTGGTTGTACATCGCCTACTGTTTATTGCGCTTGGCT
CGGCGCTCCCCCCTGTCATGTCTGGCCTCTAGTCCACGTGGCCCTTTCCG
CCAGTGTTGTAGTATGCCGACCGCGTCAAAGCGCTCTGCCACGAACGCCT
GCATCCTCCCCCCGCTTCGTGGCATCCTCCCGGGAGGCCGCAGCAGTCGA
CATTCGTCTCTGCCATGTCTGA
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