mRNA_H-paniculata_contig18146.4404.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18146.4404.1
Unique NamemRNA_H-paniculata_contig18146.4404.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18146.4404.1 vs. uniprot
Match: A0A6H5KR97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR97_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.180e-32
Identity = 67/86 (77.91%), Postives = 72/86 (83.72%), Query Frame = 1 
Query:    1 AAKQQAAWTQQRMMAVSIVLDYHDSIDGPIPSFLGGGAGINTVEWLDLGRSNLTGNIPDNLGTLPNLRRAKNESMRRSQKLYLAGN 258
            A +Q AAWTQQRMMAVSIVLDYHDSIDGPIP+FLGGG G+NTVEWLDLGRSNLTG+IP+NLGTLPNLR           KLYLAGN
Sbjct:  188 ALEQNAAWTQQRMMAVSIVLDYHDSIDGPIPAFLGGGGGVNTVEWLDLGRSNLTGSIPENLGTLPNLR-----------KLYLAGN 262
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BLAST of mRNA_H-paniculata_contig18146.4404.1 vs. uniprot
Match: D8LEE5_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEE5_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 3.140e-28
Identity = 59/74 (79.73%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:   37 MMAVSIVLDYHDSIDGPIPSFLGGGAGINTVEWLDLGRSNLTGNIPDNLGTLPNLRRAKNESMRRSQKLYLAGN 258
            MMAVSIVLDYHDSIDGPIPSFLGGG G+NTVEWLDLGRSNLTG+IP+NLGTLPNLR           KLYLAGN
Sbjct:    1 MMAVSIVLDYHDSIDGPIPSFLGGGGGVNTVEWLDLGRSNLTGSIPENLGTLPNLR-----------KLYLAGN 63
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18146.4404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KR97_9PHAE1.180e-3277.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEE5_ECTSI3.140e-2879.73Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18146contigH-paniculata_contig18146:423..4966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue3.8e-23
Seed eggNOG ortholog2880.D8LEE5
Preferred nameSLITRK4
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0005575,GO:0005623,GO:0005886,GO:0007275,GO:0007399,GO:0007409,GO:0008150,GO:0009653,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031224,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0044087,GO:0044089,GO:0044425,GO:0044464,GO:0048468,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0061564,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0120036,GO:0120039,GO:2000026
EggNOG free text desc.positive regulation of synapse assembly
EggNOG OGs28IKV@1,2QQXQ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size624
Cds size624
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18146.4404.1prot_H-paniculata_contig18146.4404.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18146 423..4966 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929411.8624156-CDS-H-paniculata_contig18146:422..5621622929411.8624156-CDS-H-paniculata_contig18146:422..562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18146 423..562 -
1691480849.9446826-CDS-H-paniculata_contig18146:422..5621691480849.9446826-CDS-H-paniculata_contig18146:422..562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18146 423..562 -
1622929411.876455-CDS-H-paniculata_contig18146:1509..16041622929411.876455-CDS-H-paniculata_contig18146:1509..1604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18146 1510..1604 -
1691480849.9616904-CDS-H-paniculata_contig18146:1509..16041691480849.9616904-CDS-H-paniculata_contig18146:1509..1604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18146 1510..1604 -
1622929411.8897145-CDS-H-paniculata_contig18146:3798..39511622929411.8897145-CDS-H-paniculata_contig18146:3798..3951Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18146 3799..3951 -
1691480849.9759746-CDS-H-paniculata_contig18146:3798..39511691480849.9759746-CDS-H-paniculata_contig18146:3798..3951Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18146 3799..3951 -
1622929411.9069395-CDS-H-paniculata_contig18146:4730..49661622929411.9069395-CDS-H-paniculata_contig18146:4730..4966Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18146 4731..4966 -
1691480849.9902668-CDS-H-paniculata_contig18146:4730..49661691480849.9902668-CDS-H-paniculata_contig18146:4730..4966Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18146 4731..4966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18146.4404.1

>prot_H-paniculata_contig18146.4404.1 ID=prot_H-paniculata_contig18146.4404.1|Name=mRNA_H-paniculata_contig18146.4404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=208bp
AAKQQAAWTQQRMMAVSIVLDYHDSIDGPIPSFLGGGAGINTVEWLDLGR
SNLTGNIPDNLGTLPNLRRAKNESMRRSQKLYLAGNRLVGNIPSSIGNIV
TLTDLSLAGNELSGPIPESFGNLTLLRYLSLRDNKLSGPIPAGLGNLVNL
EELWLNANAIEGAIPATLGNMVTACKIFLNNNEISGCIPSTLGNLASLRV
SRKDIAV*
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mRNA from alignment at H-paniculata_contig18146:423..4966-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18146.4404.1 ID=mRNA_H-paniculata_contig18146.4404.1|Name=mRNA_H-paniculata_contig18146.4404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4544bp|location=Sequence derived from alignment at H-paniculata_contig18146:423..4966- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGCAAAACAGCAAGCGGCATGGACACAGCAACGCATGATGGCTGTTTC
CATTGTGCTGGACTACCACGACTCGATCGACGGGCCTATCCCATCGTTTC
TCGGGGGCGGGGCAGGTATCAACACGGTAGAGTGGCTGGACCTGGGGCGA
AGCAACCTCACCGGAAACATTCCTGATAACTTGGGCACGCTTCCGAATCT
CAGGCGAGCTAAAAATGAATCAATGCGTCGTAGTCAGTTGTCTCTCTCTC
TCTCTTCGTGTATTACTTTGTTGATCCGGGATAAAGCGCGTTCCAATTTA
TATATTCGTCCTCTCTCTCGTAAGTATATTCAATTTTGATTCTAGAGGCA
CTTAAACACGTGGATTTTTTTTTTTTTTCAAGAATTCGGCATGTTTTGGG
GGGCTGAACGCCAAAAATTTGGATCAACCAGTCAACTTTTAGCACTAAAA
CACACACCGTGAACAAAAGTAATGGACCGAAAAAAGCGCTTTCGGAGGGA
TTAATTAGAGACGCACTTGAAAATATCTCCGATTTTTCATTATTTAAACA
AGTATAATCCTACATGTTTTTGGAGGTAAATAAAGCCTATATTTTTGAGT
CAAATAGTTGGCTTTTAACACCAAAACTAGGCCGAAAAACGCCAAAAAGA
AGCATTTTTTTTTGCGGTCGATTACCTCTTTTTCACGGTGCGTGTTTTAA
CCCCCAAAAAATACATTTAGAATTCCATTTTTTTTTTTCGAAAAGGACAT
GTTTAAGTGCCTCTATTATGATAACTGAGCATGCTTCTGCGAAAAGAAAT
ATGTTTGTATTTATATATGTATTTTGTAGTGTACTGTTGTTGCTGTGTAT
TTGATTGATGCTTGCGCCTCTTTTTTTTTTTTTTTCCAAACCCTAGTGCT
GCTAGTGGTACGTACGTACGTGCAGTCTGTCTCAAAACTAGTTGATTTGG
GTGTGCCGAGGGAATCGTCCTTTTTTTTTTTTTTTTCACCCCAACGTACA
TGTTGTCATCTGCAGGAAGCTGTACCTTGCCGGGAACAGACTGGTGGGGA
ATATACCGTCCAGTATTGGGAATATTGTGACGCTCACAGATCTTAGCCTG
GCGGGAAACGAGCTGTCTGGGCCCATCCCGGAGAGTTTCGGAAATCTAAC
TCTGCTGCGGTACCTGAGGTATGTAAAAATTGAAAACGCTCGGCAGAAGT
GAACGTCGCCAGCTAACTTTTCAGGGTCGTTTTCAGTCCCACTTGGAGGT
CGTGATTGAAATCGATCCTCACGTCACGTGCTCTCGACGTGTGTCCTATT
ACCTTTTGAAAGCCACTGTATTGTATCCGTGTTTCTGGTAGTGTTGTCAA
GAGTGTTTGTAGTGTTTTTTGGGTTTTTTTTTCTGTTGATGTTATGTTCC
TGTTATGGATAAGGCTCAACCATTTGCGATCGTGTGTGGAGGCGAAAGTG
GTGCGGTATACAAACCGTATCCCGGGTGAAAGGTTTGTTTTAGAGTAGAA
ACGTCTTTTATGTAGAACCTTGGACATGTATAGGTAATGTTCATGCTTGA
ACGTGGAGAAATGTGTGGAGATGTGCTGGTCCTATGAAATTCAATACTTT
TATCGGAGTGTAAACTGAAGTGCGAAACCAGCCACTCCCCAGATGAAGAT
GATTCTTGAGATTGTTTAGATGTTTTTTTTTTTTTCAAGTATTCGCCTAA
AGGTTCGGCGTGAGCACGTTTCTCTATTCTATATTTATTCTATACTTATA
TTTATTCTGTATGCCCTGGAGTATCTGTACCTGTGGTGAATAGCTAACTG
AAAAATAGGGAGTGATTGTTTTTTTCTCCACGTGCCCGGACATGTAATGC
ACGGAAAGTCACTCGAAAAGCTGTTTAGCTTCGGTCTAGAGAATCCGTAA
TTGTATGGGGGGTGGTAAACTTGGCTATTTTCTATCGGCTCAACGAGTTT
CTCAAGGTATCGTTTATTCACGTTCTGTTTATACATGGTCATTTGCAGAT
TTCGCGACGGTCTTTACCCGATGTGCTATGAATACCCAATACATGATACA
TCACACACATTTATATAAAACAGGCAGTGACCCACGGACCTACGCCCGAA
CGGGTAGGGTAGCTCGTGAACTGAGCATGACAGGAAGTCTAGTTAGAGGT
CTTTTAGTGGGTACAACCCCCACACTGCCTACTTGGTTCAGCCGAACCGG
GGTGGCGCCTACCCCGCAGAGGAAATGTAGAAATACTTTGGTAGAAATAC
TTCGGTATGGAAGCATTGGTAAAGGTTTTTGCCTTAGCCTTCCGGGGGTT
AACCCCCCCCCCAAAAAAAACAAACAAACAAACAGGCAGTGTCGTCCACA
ATTTCATGTTACGTATGGCACTTGGAAAAAACCAAGCGCGGTATAGGACA
TGAAGTGTTGCTCGAGAAGCGTACATGAACCCTGTGCAATCTTGTTGCAC
AGTTGATCCTCCACCAACACTGACACTACAAACACGAGGATCGTTTCAAT
GACGCTTTGTTACACGCTTTGTTTGTAGTGGAACAATAGAAGCAAGTAAC
ACCATTTTTTTTTTTTTTTCATATATAAACCAACCAGATGGAGCACCTAT
CTTCTTTTTCTATTCTTATCAAACATATTTGGTGTTTGAGAATTTGGGGA
AATTGGTTTGTGTCAATCAATTCCTCATCGTTTTTAGTTCGAAACCAAGA
AAAGACCGTAGAGAGTTGTGGGTCTTTCTTTTACTGCGTATATTAAGATA
TTTCGTTTTGTTTCGTCTGGTCGCAAAATGTGGGGAAAAAATAATATTAA
TAATAATAATAATAATAATAATAAAAAAAAAAACGTAATTTGTGAGCGCA
ATATTAGGATGGCTTCGAAATTCGTGCGATTGAACAAAGAGTGGTCTTCT
TCTTGGCCCACTTGCAATACATAAATATCCGTTTTGAATGGCAATGGTGG
GAGTTCGTGTTACCCTTTAAAAAATTGTTGGAGGAAATACCGTATAAAAT
CCGGGTCCTCCAAAAAGTCGAAATCTTGGATTCAAAACATCTTCATGGCC
ACGAATTTTAAAATGTGTTGATACACCGTGATCTTTTTTATTATTGGTGT
ATGGCCTTAAAACATTATTTTGACATGATTATTTCGCAAGTTTTAAACAT
GATTTGATTGATTTTCAATTCGCCCCAATGTACTTGTTTTTCTTTTGTGC
ATGATGGGCTGCCTTATCAAACGCTAGTTGCTATTTTATTTTTATTTTTC
TCTTTCTTTTCCTGAAACAATTCAATGATAATATTGTAACTATATTACGT
ATCCTTTTAATGTCCGTGGTTTGTTTTCCCTCGTTGTTTGGTTTCATTGG
CTCTGGGCTCAGCTTGCGAGACAACAAGCTAAGCGGCCCCATTCCAGCAG
GGTTAGGGAACTTGGTCAATCTGGAGGAGTTGTGGCTGAACGCTAACGCT
ATTGAAGGTATGTAGATGGGTGGGTGGGTGGGTGGGGTAGATGGGTGGTA
TGAGTTTGAATCAATCTTACGAATATTTGACACGTGACACATCTAATGAC
TATAAGTAGTCGCGTGAAACATCGATTTGGACAGTCGTATCATCCTCCAT
TTTTAACACCAAAATGTCGAACTATGGAGTCAAATTGAAGAAGGTATCGG
TTGTAACATGCAGTACGACGTACTGGGTGGTGGGCCAAATTGACGATATC
GTATTCAGTCATGCCTTGCCCTTGGTGATGTATTACATTTTTCCTGATGA
ATAAGTGAAATTTGCAGTCGGCTAGCTGTATAACCTACCTCAAGATGGGT
ACACGATGGAGTAATTTGTATAATGTGAGGTTTCAGAGAATTCTATGGTT
GAACCATGGCATGGTTGACTTTAAGAATTAAATATTTGGAGGATGTCTCT
GTTCTTTGGTTCGTTTGAAATTTTTAATGTTATACCTACCGTACAGTACA
CAGCGCGTGATACAGTGATGTATTCCCTTGTAAAGGTTGCCGTAGCCCAT
GTCATACGTGGTCGAAGAGGGTTCGCGAGGTCCTGGTATTGGGTCATGAT
GGAGTCCGAATTTGACCTTCGCCCGCCCTCGGCTCAAATCCGCCCTCGGC
TCAACCCCCCCCTTTACCGCGATCCGAATTTGTCCTTTTATTGCTTCCTC
CGGAGTTGGTTCTGCTCGGGATTACTCCGTTTTTTTGTTTTTCAACGCTC
CTTTGATCGGGGCAAAAAAATATTTGGAAACGTCGAAAAGAAGTATTGAA
CATTTTCAACAGGGCTTGATGACGGGATTACGAGATGATGATGATGATGA
TGATGATGGATGGGACAAGACAGGCTGGGAGTTATCGAACTTTTTTTTTT
CTTCTTTTTTTTTCTGTAGTCTGACTGACCCCCCGACCCCCGACCTCCCA
ATAGGTGCCATTCCGGCGACTTTGGGAAATATGGTGACTGCTTGCAAAAT
CTTCCTGAACAATAACGAGATTTCGGGATGTATTCCAAGCACCCTCGGGA
ATCTGGCTAGCCTTCGGGTGAGTAGGAAGGACATTGCGGTGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig18146:423..4966-

>mRNA_H-paniculata_contig18146.4404.1 ID=mRNA_H-paniculata_contig18146.4404.1|Name=mRNA_H-paniculata_contig18146.4404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1248bp|location=Sequence derived from alignment at H-paniculata_contig18146:423..4966- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGCAAAACAGCAAGCGGCATGGACACAGCAACGCATGATGGCTGTTTC
CATTGTGCTGGACTACCACGACTCGATCGACGGGCCTATCCCATCGTTTC
TCGGGGGCGGGGCAGGTATCAACACGGTAGAGTGGCTGGACCTGGGGCGA
AGCAACCTCACCGGAAACATTCCTGATAACTTGGGCACGCTTCCGAATCT
CAGGCGAGCTAAAAATGAATCAATGCGTCGTAGTCAGCCGCAAAACAGCA
AGCGGCATGGACACAGCAACGCATGATGGCTGTTTCCATTGTGCTGGACT
ACCACGACTCGATCGACGGGCCTATCCCATCGTTTCTCGGGGGCGGGGCA
GGTATCAACACGGTAGAGTGGCTGGACCTGGGGCGAAGCAACCTCACCGG
AAACATTCCTGATAACTTGGGCACGCTTCCGAATCTCAGGCGAGCTAAAA
ATGAATCAATGCGTCGTAGTCAGAAGCTGTACCTTGCCGGGAACAGACTG
GTGGGGAATATACCGTCCAGTATTGGGAATATTGTGACGCTCACAGATCT
TAGCCTGGCGGGAAACGAGCTGTCTGGGCCCATCCCGGAGAGTTTCGGAA
ATCTAACTCTGCTGCGGTACCTGAGGAAGCTGTACCTTGCCGGGAACAGA
CTGGTGGGGAATATACCGTCCAGTATTGGGAATATTGTGACGCTCACAGA
TCTTAGCCTGGCGGGAAACGAGCTGTCTGGGCCCATCCCGGAGAGTTTCG
GAAATCTAACTCTGCTGCGGTACCTGAGCTTGCGAGACAACAAGCTAAGC
GGCCCCATTCCAGCAGGGTTAGGGAACTTGGTCAATCTGGAGGAGTTGTG
GCTGAACGCTAACGCTATTGAAGCTTGCGAGACAACAAGCTAAGCGGCCC
CATTCCAGCAGGGTTAGGGAACTTGGTCAATCTGGAGGAGTTGTGGCTGA
ACGCTAACGCTATTGAAGGTGCCATTCCGGCGACTTTGGGAAATATGGTG
ACTGCTTGCAAAATCTTCCTGAACAATAACGAGATTTCGGGATGTATTCC
AAGCACCCTCGGGAATCTGGCTAGCCTTCGGGTGAGTAGGAAGGACATTG
CGGTGTGAGTGCCATTCCGGCGACTTTGGGAAATATGGTGACTGCTTGCA
AAATCTTCCTGAACAATAACGAGATTTCGGGATGTATTCCAAGCACCCTC
GGGAATCTGGCTAGCCTTCGGGTGAGTAGGAAGGACATTGCGGTGTGA
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