mRNA_H-paniculata_contig18136.4398.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18136.4398.1
Unique NamemRNA_H-paniculata_contig18136.4398.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18136.4398.1 vs. uniprot
Match: A0A6H5KHD0_9PHAE (BING4CT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHD0_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 2.920e-58
Identity = 96/109 (88.07%), Postives = 103/109 (94.50%), Query Frame = 1 
Query:    4 VWKDAIAMKAKAPYMEHDMPSRMVNRTRFRPLQDVLGLGHTEGYSTMVVPGAGEPNFDAFEANPFQTSAQRREAEVVSLLEKLTPETIGLDPSFVGKVDDDPAALQEEQ 330
            VWKDAIA KAKAPYMEHD+PSR+++RTRFRPLQDVLGLGHTEGYS+MVVPGAGEPNFD FEANPFQTS QRRE+EVVSLLEKLTPETIGLDPSFVG+VD DP ALQ EQ
Sbjct:  441 VWKDAIATKAKAPYMEHDLPSRLIHRTRFRPLQDVLGLGHTEGYSSMVVPGAGEPNFDTFEANPFQTSKQRRESEVVSLLEKLTPETIGLDPSFVGRVDADPVALQAEQ 549
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BLAST of mRNA_H-paniculata_contig18136.4398.1 vs. uniprot
Match: W7TI68_9STRA (U3 snornp-associated protein utp7 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TI68_9STRA)

HSP 1 Score: 144 bits (362), Expect = 3.790e-38
Identity = 69/109 (63.30%), Postives = 82/109 (75.23%), Query Frame = 1 
Query:    4 VWKDAIAMKAKAPYMEHDMPSRMVNRTRFRPLQDVLGLGHTEGYSTMVVPGAGEPNFDAFEANPFQTSAQRREAEVVSLLEKLTPETIGLDPSFVGKVDDDPAALQEEQ 330
            VWKDA+A KA +PY+ HD+P   V+  RFRP +DVLG+GH  GY +MVVPGAGEPNFD+ EANPFQ+  QRREAEV  LL+KL PETI LDP  +G VD  P  L +EQ
Sbjct:  378 VWKDALAQKAHSPYVRHDIPGNAVDTLRFRPFEDVLGIGHKGGYVSMVVPGAGEPNFDSLEANPFQSRKQRREAEVHGLLDKLAPETITLDPRSIGAVDRQPDELMKEQ 486
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BLAST of mRNA_H-paniculata_contig18136.4398.1 vs. uniprot
Match: A0A4D9D172_9STRA (BING4CT domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D172_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.040e-37
Identity = 69/109 (63.30%), Postives = 83/109 (76.15%), Query Frame = 1 
Query:    4 VWKDAIAMKAKAPYMEHDMPSRMVNRTRFRPLQDVLGLGHTEGYSTMVVPGAGEPNFDAFEANPFQTSAQRREAEVVSLLEKLTPETIGLDPSFVGKVDDDPAALQEEQ 330
            VWKDA+A KA++PY+ HD+P   V+  RFRP +DVLG+GH  GY +MVVPGAGEPNFD+ EANPFQ+  QRREAEV  LL+KL PETI LDP  +G VD  P  L +EQ
Sbjct: 1592 VWKDALARKAQSPYVRHDIPGNAVDTLRFRPFEDVLGIGHKGGYVSMVVPGAGEPNFDSLEANPFQSRKQRREAEVHGLLDKLAPETITLDPRSIGAVDRQPDELMKEQ 1700
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BLAST of mRNA_H-paniculata_contig18136.4398.1 vs. uniprot
Match: A0A7S3WMH3_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WMH3_EMIHU)

HSP 1 Score: 135 bits (340), Expect = 5.440e-37
Identity = 67/108 (62.04%), Postives = 81/108 (75.00%), Query Frame = 1 
Query:    4 VWKDAIAMKAKAPYMEHDMPSRMVNRTRFRPLQDVLGLGHTEGYSTMVVPGAGEPNFDAFEANPFQTSAQRREAEVVSLLEKLTPETIGLDPSFVGKVDDDPAALQEE 327
            V+KD +A +A APYM H +P R     RF P +DVLG+GH+ GYS+++VPGAGEPNFDAFEANPF+T  QRREAEVV+LLEKL  ETI LDP  +GKVD +    Q E
Sbjct:   83 VFKDGLAARASAPYMTHRLPGREATVVRFCPYEDVLGVGHSRGYSSVLVPGAGEPNFDAFEANPFETRTQRREAEVVALLEKLPAETITLDPQQLGKVDRNQGERQRE 190
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BLAST of mRNA_H-paniculata_contig18136.4398.1 vs. uniprot
Match: A0A7R9UD32_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UD32_9STRA)

HSP 1 Score: 139 bits (350), Expect = 5.770e-37
Identity = 67/112 (59.82%), Postives = 83/112 (74.11%), Query Frame = 1 
Query:    4 VWKDAIAMKAKAPYMEHDMPSRMVNRTRFRPLQDVLGLGHTEGYSTMVVPGAGEPNFDAFEANPFQTSAQRREAEVVSLLEKLTPETIGLDPSFVGKVDDDPAALQEEQVRE 339
            +WKDAIA KA +PYM HD+   ++ RT+FRP +D+LG+GH  GYS++VVPG+GEPNFD F ANPFQTS QRRE EV SLLEKL PETI LD   +G V  D   + E++  E
Sbjct:  348 IWKDAIATKAVSPYMNHDLEGVVIQRTKFRPYEDILGIGHAAGYSSIVVPGSGEPNFDTFTANPFQTSQQRREQEVKSLLEKLQPETIVLDQESIGAVTVDAKEVLEQRKHE 459
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BLAST of mRNA_H-paniculata_contig18136.4398.1 vs. uniprot
Match: A0A1V9ZG45_9STRA (BING4CT domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZG45_9STRA)

HSP 1 Score: 138 bits (348), Expect = 2.980e-36
Identity = 66/111 (59.46%), Postives = 83/111 (74.77%), Query Frame = 1 
Query:    4 VWKDAIAMKAKAPYMEHDMPSRMVNRTRFRPLQDVLGLGHTEGYSTMVVPGAGEPNFDAFEANPFQTSAQRREAEVVSLLEKLTPETIGLDPSFVGKVDDDPAALQEEQVR 336
            VWKDA   +A APYM H MPSR     RFRP +DVL +GH++G + +VVPGAGEPNFD+FEANPF+ + QRRE EV SLLEKL PE I L+P  +G+VD DP   Q+E+++
Sbjct:  353 VWKDAFTSQAPAPYMVHRMPSRQATSVRFRPFEDVLTIGHSKGLANIVVPGAGEPNFDSFEANPFENTKQRRETEVRSLLEKLQPEMITLNPMAIGRVDVDPQDEQDEKIK 463
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BLAST of mRNA_H-paniculata_contig18136.4398.1 vs. uniprot
Match: A0A835ZC99_9STRA (U3 snoRNP-associated protein Utp7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC99_9STRA)

HSP 1 Score: 136 bits (343), Expect = 8.500e-36
Identity = 68/109 (62.39%), Postives = 80/109 (73.39%), Query Frame = 1 
Query:    4 VWKDAIAMKAKAPYMEHDMPS-RMVNRTRFRPLQDVLGLGHTEGYSTMVVPGAGEPNFDAFEANPFQTSAQRREAEVVSLLEKLTPETIGLDPSFVGKVDDDPAALQEE 327
            VW+DAIA KA+APY+ HD      V R RFRP +D LG GH  GY+T++VPGAGEPNFD F ANPF+T  QRRE EV +LL+KL PETI LDP+ V  VD DP AL+ E
Sbjct:  299 VWRDAIATKARAPYLRHDFADGARVERLRFRPYEDALGCGHASGYATLLVPGAGEPNFDTFAANPFETRKQRREGEVKALLDKLGPETIMLDPAAVATVDADPEALRGE 407
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BLAST of mRNA_H-paniculata_contig18136.4398.1 vs. uniprot
Match: A0A1V9Y8L9_9STRA (BING4CT domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y8L9_9STRA)

HSP 1 Score: 134 bits (338), Expect = 7.440e-35
Identity = 66/112 (58.93%), Postives = 81/112 (72.32%), Query Frame = 1 
Query:    4 VWKDAIAMKAKAPYMEHDMPSRMVNRTRFRPLQDVLGLGHTEGYSTMVVPGAGEPNFDAFEANPFQTSAQRREAEVVSLLEKLTPETIGLDPSFVGKVDDDPAALQEEQVRE 339
            VWKDA   +A APYM H MPSR     RFRP +DVL +GH+ G S +VVPG+GE NFD+FEANPF+ + QRRE EV SLLEKL PE I L+P  +G+VD DP    +E+V+E
Sbjct:  349 VWKDACTTQAAAPYMTHRMPSRQAQSVRFRPYEDVLTIGHSRGLSNIVVPGSGEANFDSFEANPFENTKQRRETEVRSLLEKLRPEMITLNPMAIGRVDKDPNEEYQEKVQE 460
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BLAST of mRNA_H-paniculata_contig18136.4398.1 vs. uniprot
Match: A0A6G0XNB3_9STRA (BING4CT domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XNB3_9STRA)

HSP 1 Score: 134 bits (338), Expect = 8.080e-35
Identity = 64/110 (58.18%), Postives = 82/110 (74.55%), Query Frame = 1 
Query:    4 VWKDAIAMKAKAPYMEHDMPSRMVNRTRFRPLQDVLGLGHTEGYSTMVVPGAGEPNFDAFEANPFQTSAQRREAEVVSLLEKLTPETIGLDPSFVGKVDDDPAALQEEQV 333
            +WKDA++ KA +PYM H MP ++ N  RFRP +DVL +GH+ G+S MVVPGAGE NFD+FEANPF+   QRRE EV SLLEKL PE I L+P  +G+VD +P    EE++
Sbjct:  358 IWKDALSTKASSPYMTHRMPGKVPNSVRFRPYEDVLSIGHSVGFSNMVVPGAGEANFDSFEANPFENLKQRRETEVKSLLEKLRPEMITLNPMVIGRVDVNPNDEYEEKL 467
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BLAST of mRNA_H-paniculata_contig18136.4398.1 vs. uniprot
Match: A0A485L622_9STRA (Aste57867_16352 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L622_9STRA)

HSP 1 Score: 133 bits (334), Expect = 2.960e-34
Identity = 64/110 (58.18%), Postives = 81/110 (73.64%), Query Frame = 1 
Query:    4 VWKDAIAMKAKAPYMEHDMPSRMVNRTRFRPLQDVLGLGHTEGYSTMVVPGAGEPNFDAFEANPFQTSAQRREAEVVSLLEKLTPETIGLDPSFVGKVDDDPAALQEEQV 333
            VWKDA+  KA +PYM H MP++  +  RFRP +DVL +GH+ G+S +VVPGAGE NFD+FEANPF+   QRRE EV SLLEKL PE I L+P  +G+VD +P    EE+V
Sbjct:  357 VWKDAMTHKASSPYMVHRMPAKQTHSVRFRPFEDVLSIGHSHGFSNIVVPGAGEANFDSFEANPFENLKQRRETEVKSLLEKLKPEMITLNPMVIGRVDMNPHDEYEEKV 466
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18136.4398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHD0_9PHAE2.920e-5888.07BING4CT domain-containing protein n=2 Tax=Ectocarp... [more]
W7TI68_9STRA3.790e-3863.30U3 snornp-associated protein utp7 n=1 Tax=Nannochl... [more]
A0A4D9D172_9STRA1.040e-3763.30BING4CT domain-containing protein n=1 Tax=Nannochl... [more]
A0A7S3WMH3_EMIHU5.440e-3762.04Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7R9UD32_9STRA5.770e-3759.82Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A1V9ZG45_9STRA2.980e-3659.46BING4CT domain-containing protein n=1 Tax=Achlya h... [more]
A0A835ZC99_9STRA8.500e-3662.39U3 snoRNP-associated protein Utp7 n=1 Tax=Tribonem... [more]
A0A1V9Y8L9_9STRA7.440e-3558.93BING4CT domain-containing protein n=1 Tax=Thrausto... [more]
A0A6G0XNB3_9STRA8.080e-3558.18BING4CT domain-containing protein n=1 Tax=Aphanomy... [more]
A0A485L622_9STRA2.960e-3458.18Aste57867_16352 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18136contigH-paniculata_contig18136:1521..2264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.8
Seed ortholog evalue5.1e-45
Seed eggNOG ortholog2880.D7FNZ6
KEGG koko:K14768
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG1272@1,KOG1272@2759
Ec32 ortholog descriptionU3 snoRNP-associated protein Utp7
Ec32 orthologEc-10_004950.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons2
Model size339
Cds size315
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18136.4398.1prot_H-paniculata_contig18136.4398.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18136 1521..2240 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929411.1384735-CDS-H-paniculata_contig18136:1520..17281622929411.1384735-CDS-H-paniculata_contig18136:1520..1728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18136 1521..1728 -
1691480849.6201317-CDS-H-paniculata_contig18136:1520..17281691480849.6201317-CDS-H-paniculata_contig18136:1520..1728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18136 1521..1728 -
1622929411.1503148-CDS-H-paniculata_contig18136:2133..22401622929411.1503148-CDS-H-paniculata_contig18136:2133..2240Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18136 2134..2240 -
1691480849.6341338-CDS-H-paniculata_contig18136:2133..22401691480849.6341338-CDS-H-paniculata_contig18136:2133..2240Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18136 2134..2240 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929411.160316-UTR-H-paniculata_contig18136:2240..22641622929411.160316-UTR-H-paniculata_contig18136:2240..2264Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18136 2241..2264 -
1691480849.643872-UTR-H-paniculata_contig18136:2240..22641691480849.643872-UTR-H-paniculata_contig18136:2240..2264Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18136 2241..2264 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18136.4398.1

>prot_H-paniculata_contig18136.4398.1 ID=prot_H-paniculata_contig18136.4398.1|Name=mRNA_H-paniculata_contig18136.4398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MKAKAPYMEHDMPSRMVNRTRFRPLQDVLGLGHTEGYSTMVVPGAGEPNF
DAFEANPFQTSAQRREAEVVSLLEKLTPETIGLDPSFVGKVDDDPAALQE
EQVRE
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mRNA from alignment at H-paniculata_contig18136:1521..2264-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18136.4398.1 ID=mRNA_H-paniculata_contig18136.4398.1|Name=mRNA_H-paniculata_contig18136.4398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=744bp|location=Sequence derived from alignment at H-paniculata_contig18136:1521..2264- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTATGGAAAGACGCTATTGCTATGAAGGCGAAGGCTCCTTACATGGA
GCATGACATGCCTTCCAGAATGGTGAACAGGACTCGTTTCCGCCCCCTGC
AGGATGTGCTAGGGTTGGGGCACACGGAAGGGTAAGGGAACTAAAGTAGC
GTAGTAGCAACAAAAAAAATATATATATATATATTGGGGTGTCGGTGCAG
CGCGCATCACACACTGTGGATTAGTTTTTTTGTTGGCGGGGCACTGATAC
TCCGGGGTCTGCTGTACGCGTAGCGGCGTATGAGTGCTACGTCGACAACA
AATAGAGAATGTTATCCTTTCTTTGTTTATTTCGAAAATAACGGCAGGGT
GGGGTTTTGATAATATCCGGATTCTTGGCCGCCTGGACGGCGGTATTGCA
CGCATCCTGTTCATGTTCCGGTTGTGCCAGGGTAACCACTCATGATCATC
AATACCGTATTGAGTAGCAAAGGATACGTTGTGCATTTACCCGCTGCCTC
CACTGATTGCTCGATGATCCCATTGCTCACTCCCAGGTACTCCACCATGG
TGGTGCCGGGAGCGGGAGAACCCAACTTCGATGCCTTCGAGGCGAACCCT
TTCCAAACCTCCGCGCAGCGCCGAGAAGCAGAGGTGGTCTCTCTCCTCGA
GAAGCTCACCCCGGAAACTATCGGCCTCGACCCGTCGTTTGTGGGCAAGG
TTGACGACGACCCCGCGGCTCTTCAGGAGGAGCAGGTGAGGGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig18136:1521..2264-

>mRNA_H-paniculata_contig18136.4398.1 ID=mRNA_H-paniculata_contig18136.4398.1|Name=mRNA_H-paniculata_contig18136.4398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig18136:1521..2264- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGCGAAGGCTCCTTACATGGAGCATGACATGCCTTCCAGAATGGT
GAACAGGACTCGTTTCCGCCCCCTGCAGGATGTGCTAGGGTTGGGGCACA
CGGAAGGATGAAGGCGAAGGCTCCTTACATGGAGCATGACATGCCTTCCA
GAATGGTGAACAGGACTCGTTTCCGCCCCCTGCAGGATGTGCTAGGGTTG
GGGCACACGGAAGGGTACTCCACCATGGTGGTGCCGGGAGCGGGAGAACC
CAACTTCGATGCCTTCGAGGCGAACCCTTTCCAAACCTCCGCGCAGCGCC
GAGAAGCAGAGGTGGTCTCTCTCCTCGAGAAGCTCACCCCGGAAACTATC
GGCCTCGACCCGTCGTTTGTGGGCAAGGTTGACGACGACCCCGCGGCTCT
TCAGGAGGAGCAGGTGAGGGAAGTACTCCACCATGGTGGTGCCGGGAGCG
GGAGAACCCAACTTCGATGCCTTCGAGGCGAACCCTTTCCAAACCTCCGC
GCAGCGCCGAGAAGCAGAGGTGGTCTCTCTCCTCGAGAAGCTCACCCCGG
AAACTATCGGCCTCGACCCGTCGTTTGTGGGCAAGGTTGACGACGACCCC
GCGGCTCTTCAGGAGGAGCAGGTGAGGGAA
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