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Homology
BLAST of mRNA_H-paniculata_contig1813.4396.1 vs. uniprot
Match: A0A6H5KTN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTN6_9PHAE) HSP 1 Score: 241 bits (614), Expect = 6.210e-72 Identity = 156/315 (49.52%), Postives = 184/315 (58.41%), Query Frame = 3
Query: 114 MGGGDRMSTTAFLAAMGCKGNSQISALPQGLLQALALLDQNVGEVSERGSLSGVVDSLVEWFLTESMAPRSADGDDLALSLRAARWLASRFLECDAAA-------------------AAITTLTYQQKPWQKHEHATGGSLRGDYDNGDYDDSKIDNADECLQLLLELAAGRLGTGVDGLHSSLSLMGGDFRGLRSMRVRRAFAAALRAHLRTVQVDAVFRFDTPKRLGGSSKSGTGVAGQVGGAGVAATVQGVLSPGRLALPPISNWASFRKYTVTMWVRPNPVDGAGFEPVTLFRFRNGEGIGVEAVLSGGGA 1001
MGGG M L+ + Q S++P LLQAL LDQ +GE +ER +L GVVDSLVEWFL ES APR+ADGDDL L LRAA WLA RF + + A TT + P G +G + + D+ +E LQLLLEL AGRLG GVDG+ SLSLM GD G +SMRVRRAFA+ALRAHL TV++D+VFRFD PK S G V SPGRLALPP+ +WASFRKYTVTMWVR +P +G + TLFRFRN EG+GVEA LSG A
Sbjct: 1 MGGGHGMGAEMELSLVAAL---QASSMPASLLQALRTLDQELGEETEREALDGVVDSLVEWFLHESRAPRTADGDDLGLCLRAACWLAPRFANLSSCSDPRPQAVDETADELNNGSQATTTTTATPETPAPGEASEDLGERQG------HTTAARDDGEEPLQLLLELGAGRLGAGVDGIRKSLSLMAGDL-GPKSMRVRRAFASALRAHLGTVRLDSVFRFDAPKAGPPSGNGGV-----------------VSSPGRLALPPMLSWASFRKYTVTMWVRLDPAY-SGADAATLFRFRNAEGVGVEATLSGAAA 287
BLAST of mRNA_H-paniculata_contig1813.4396.1 vs. uniprot
Match: D8LFY6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFY6_ECTSI) HSP 1 Score: 202 bits (513), Expect = 3.030e-58 Identity = 133/278 (47.84%), Postives = 156/278 (56.12%), Query Frame = 3
Query: 114 MGGGDRMSTTAFLAAMGCKGNSQISALPQGLLQALALLDQNVGEVSERGSLSGVVDSLVEWFLTESMAPRSADGDDLALSLRAARWLASRFLEC-------------------DAAAAAITTLTYQQKPWQKHEHATGGSLRGDYDNGDYDDSKIDNADECLQLLLELAAGRLGTGVDGLHSSLSLMGGDFRGLRSMRVRRAFAAALRAHLRTVQVDAVFRFDTPKRLGGSSKSGTGVAGQVGGAGVAATVQGVLSPGRLALPPISNWASFRKYTVTM 890
MGGG M L+ + Q S++P LLQAL LDQ +GE +ER +L GVVDSLVEWFL ES APR+ADGDDL L LRAA WLA RF + D + AA T + P G +G + D+ +E LQLLLEL AGRLG GVDG+H SLSLM G GLRSMRVRRAFA+ALRAHL TV+VD+VFRFD PK S G V SPGRLALPP+ +WASFRK + +
Sbjct: 1 MGGGHGMGAEMELSLVAAL---QASSMPASLLQALRTLDQELGEETEREALDGVVDSLVEWFLHESRAPRTADGDDLGLCLRAACWLAPRFADLSSSGSPRPQAADETAAALNDGSQAATATTATPETPAPGEAREDLGERQGQTT------AARDDGEEPLQLLLELGAGRLGAGVDGIHRSLSLMAGALLGLRSMRVRRAFASALRAHLGTVRVDSVFRFDAPKAGPPSGNGGV-----------------VSSPGRLALPPMLSWASFRKREIVV 252
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 1006 |
| Cds size | 891 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1813.4396.1 >prot_H-paniculata_contig1813.4396.1 ID=prot_H-paniculata_contig1813.4396.1|Name=mRNA_H-paniculata_contig1813.4396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=297bp
MGGGDRMSTTAFLAAMGCKGNSQISALPQGLLQALALLDQNVGEVSERGS LSGVVDSLVEWFLTESMAPRSADGDDLALSLRAARWLASRFLECDAAAAA ITTLTYQQKPWQKHEHATGGSLRGDYDNGDYDDSKIDNADECLQLLLELA AGRLGTGVDGLHSSLSLMGGDFRGLRSMRVRRAFAAALRAHLRTVQVDAV FRFDTPKRLGGSSKSGTGVAGQVGGAGVAATVQGVLSPGRLALPPISNWA SFRKYTVTMWVRPNPVDGAGFEPVTLFRFRNGEGIGVEAVLSGGGAG back to topmRNA from alignment at H-paniculata_contig1813:15848..21378+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1813.4396.1 ID=mRNA_H-paniculata_contig1813.4396.1|Name=mRNA_H-paniculata_contig1813.4396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5531bp|location=Sequence derived from alignment at H-paniculata_contig1813:15848..21378+ (Halopteris paniculata Hal_grac_a_UBK monoicous) TAACGAGTGCTCTCCATCTCGACAGAAGGAAGAGCAAATCCAACTGCAGT
CGTGGCTAACCATTAGCACGCCAGAGGTAAATACGAAGTAAAGGATAGAA
GAAGCAAGGGCCAATGGGCGGCGGTGATCGGATGTCGACCACCGCCTTCC
TTGCTGCTATGGGCTGCAAGGGCAATTCGCAGATTTCTGCACTTCCGCAA
GGATTGCTGCAAGCCTTAGCGCTACTGGATCAGAATGTTGGAGAAGTCTC
TGAGCGAGGGTCGCTCAGTGGGGTGGTGGACAGCCTGGTCGAGTGGTTTC
TCACGGAGTCAATGGCTCCTCGATCTGCGGATGGTGCGTCTGTTTGGGGT
TTCATGCATGCTTGCTGTCTTTCCTCGTATGTTTCGTAAAGGTTCGAGTT
TTGGATCATTTTGCGTAGAGCTAGCTCTAGCTCCACACAGGTGCACTCCC
GCTTTCTGTACCTGGTATGTTTCCGTCTGAGTGTTGTATGTGATGATATT
ATGATGAAGGTGGATGATTTCGGGACTTCACTTCAATCCAACGTCACGAT
CGACTTGACTTTGCGCTGTTGTTGAGATTTTTTCTATCTCTTGATCATTT
GTAAAGAGGCCACTAAATGCCAGGAACGGCTTACACCGTTACATTGCGTG
TCTATGCTATCGTTTTGCAGCGGTTTTCTCCGCACTGTCTGCTCTTCTTG
CTCAGACTGATAATCCAGCTTCAGTTCAGTTTCACCATTGTTTCTGTTTC
TATAATAGAACAGACTGCGTTTTCGAGGGGAAGTCGCCACCGCCCTCACT
CAACCCTCACTTCACTTCAACGCAAAGTCGCGGTATGTAATACGGTGACA
TTTACATGGGCAGATGTCTACCCCCATGTTGAGCACTCTGTGATACTTCG
GTCTGATAAGAGGTAGAGTACCCCCCTTGCAACTTTCTATGTTGCTGCCG
TTCACTGCACACATCATGGTTCTCTGGGTAGAGATTTTCAGGTTTAAGTT
TCCTTCGTTTTTTTCATCGAAGAGCGAAGAACTGAACCTTGTCTACTGCA
CAGATCGCATGTGCATATGCGATAGACATGTGTGAGATATGAAGTGATGA
CTACTGTAAAGTGCAAATGCGCCCACCCTGTACCTAACTGCATCTGTCCT
CTCCCAAAATCGGCATAGCTGACAGACGCAGGCATTGCTACGGGGGTGCA
GTATGCCTTGCTTTCCAACACATGATCCGAACATTTACACCTGGAAGGAG
TGGGACGCGATCGATTATCATAGTACAAAATTGTAGCTCTCTGTATTGCA
CTGACTTCTGGTACATTACTCTAGTGTTTTTTTCGATATTAATCTCTCCG
CTGCTTCCAGGGGTATCTCTCTGTCCTGCTTTGTCCTAAAATTGCCGTAA
TGACGTGTAAATGGGTGTGTGCGTCGGCGACTGACCTGCAAAGCTGCCTA
TGGGGGGCCTCTTGTTCACTACTTCATGTTGTGCTGTAAGGCATCGGTGG
GGGTAGGTGAACAAGCTGTCTATCGGTCGTATACGCAGGAAGATTTGGTG
GGTACTGTCTGTTGGGGTGGTAGCTTGACAGAAGCAGCTAGTTATGGTAT
GTGCATGCATAGATCAGTACCATGCTTACAACGCGGATATGGTCTGCCCT
AACCTAGCATGGCTCGGGAGAGTTGGGAATGTACGGAGATGGGACCCTGT
GCGTAAACGTTGAAGGTTAGGTTTGCCGTGCTGTTGTATCGGCTGTTTTC
ACAACACAGCACATGCTATTATGATATTATGATACATTCTGTGTTGGGGT
TGAGGAGAAGGCTTCAACAAGCAAACTTCAACGGTGCCCTGCCTCGTTGA
GCTTGGAACGTCTCGTACGTCACATGGTCAACAGGCAAGACTTCCTTATG
TCTGACGTCAAATGTTACTACTACATCGTGTAGTAGTTGATGACTGCAAA
CGTTACCGTATTGACAAACTTTTCCCGTGGGCTCGCACCTCGAAAATCTG
TTGTCTGTTTTCTGTTTTCTGGGATCTACATTTCTTGTGGCATTTTAATG
CATCATGGTTTGCGTTCGTTCTATTTTGGAAAATTAGCAATAGAGGCGAT
GGTGTACAGTAGATTAATCCGTCCCCGCTGTAAAGAGCAGTGGTTGGCTC
GTTGACATATACACACCCTTCAGCTGAAAAGAACCAGGGTTCTACACCTG
TCCGGTTTGACCAACGAGCGATTGCGATGCCTGCTGACGTAGGTTGGCTG
TACGGGACAGGTGACGGTATAGTTACTCCTCGGCGCAGCAGGTGAATTTT
AGAAGTAATTTGACCTCTTCGGGAATAATAAGTTGCGCTTCACCAATTTC
GTTACTGTTGGGGGATATCCGTAGGGAAAATGTTATCCTCTGAGACATTG
AGGTTGCGATTCGAGGCATTGAGTTGCGGTGAGGCTGTACAGCCGATGGC
GGCCACCGGCTTGGCCAAGCAGCCACCGGCCAAAAATTCCACTGCCGAAC
CAGTCACCATAGTGACTGTTGACCTGTCCATGGCCAGCCCACCGGTTGCT
CACCATAGGCAGGTGTGCTGAACAGGTTCAACTCCCAAGAACAGGTGTAG
AACCCCGGAAAGAATAATGGTGGATTCACGCAGATGAGGCCGTGTGTTCT
CACTTGAAAGGTGAAGAGTGATCTTCGAAAGTAAGTGGTTTTCCAGAGCA
CTTCCAAGTGTATACGCAGTTCTGATTTGCGGAACTTCCATGGGCAAAAA
GCAGACCTCAATCACAACTGCGCATACACTCGGAAGCGGCTCTACGAATC
ACCCACTTTCGAAAACCATCTCTTACTTTTGAAGTTGATGCAGTCAGGGT
TTTTGAGAGAAGTTGCTTCCTGAAGAAGCTCAAGAGCGAGAGAGGTTGGG
ATGCCGTGCGATTGCTCTCAGACTTGCATTTCTCTTGTCATATGTGTGCC
TCGTGGTGTCTAGCGTGGTAGTATCTGGCCGCCTGGCAAGACAAGCGTTA
TGATTAGGCATTCGGGATCACGCCAGGAACGTGCTACTAGGCGTAGTGCG
TGTGCTAAAACACGGCACATTTTTTCCGTTTTGTTTGTGTTTGTTTTCTC
CGAAAAACGGAGATCGCGTAGTGAGCATCGAAGATTGGACGACTCTGATT
TAATTGCACCGGAAATATGAGACACAGTATAATTGCCGTCGATTTTTGGG
CATCTATACTGGGGAGTGAGTAGCGCCCGGTACAACATTCTTGCACCATG
AGCGCACTCGTAAGCATTTGTCGCAAATGCCGTGTTATGTTCAACACCGC
CTTGATTAGACATGAAAAACTTGCGCTGGTCGCTGAGAGATGAGGGCTGC
CCCATTTGCTGTTTTTCGTACTATGTATGGATGTAAATATATGAGGTATG
TGGTTCAATTCGTGTTGCATGTCTACACGTGGCACTCTGCGCTAGCAATG
TCCCACCGTTTCTTGTGTCGTCCTGGGGCTGGTGGCGATAGTTTAAACTG
TGCCTTTAGATTAGAATGGCTTTGTAGAGGTAGTGGAGTAGTAGAGTACT
CAAGTACATTCAACGTCTCTTGGTATGCTGGTAGCGGCACGCCCTCTCTC
CTGTTTCTAGGATACTGATGTTTGTATGTTTTCCCTGACTTGATCATATT
TGGATTGCTTCGGCGGGGCTTCCCATCAATCATGCTGACCAAACTTCATA
GACTAGCCACTCACAGTCGTTTTCAATCCTTTCAGGACCAGACGGTGTTT
CGGAAAAAATCTGAGACATGTGATAGTCGGTCGCGCTGCGGAAGATCAGG
GAGTATTCGTTTTTTGACAAGGAGCGGGAGGTGTAGGGTTTTGGCCTCTC
CCTCCTAGAGTACGACGACGGAACTTCCAGCGGTGGCGTTCGTTCTGGCC
AATCAAAAACGTTAGTTGACCTGCATATTAGCCGACTCGGAGTTTGGGGC
GGCCTTTTCCCCCAACTGAACCCCGCTCGTGCTTGTGCAGGGTCGACTAT
TATAGACGATCGAACGGGGAAATTTATCACAACAAGAGCAAACCAATGGG
TTGGCTCTGCGGTCCTCGGGGTTGTGGCATCTATACTGCTATTATTCATT
AACCAAAGACCGAGGATGAATTCGATTATGGCCATTGGCTCGTGAGGACA
CAGTTCGTTTGATTTCATGCCCTGGGGGTGCGGCTTTGTGTAGCACACAT
GTCACTCTGCACAGGCAGTAGTACACTTAAATGTGTGATTTTCAATTTCG
TGTTCCTGGTGAGCGCTGCAGTCGTGGTGCCCAGAACAATGCCGAACTCC
TGTCGTTGCTGTATGAACTAAATTGGCTGTCCGGAAGGCGGTTGCTCCCT
ATTCCCACGTATTCATTTCATGAGATAGGTCCATCTTTTTTTTTTCTTTT
TTTTTCAATTGAGGTGGGGATTCTGAAGAGAGCCCGGCGTCCAGAAGGAT
TAAATAGACGTCTTTCGTGAGAAAAGCCAAAAACAAGGCTACTTCCTCTT
TATCGAGGTCTGGCGTTTTAATCTACCCACTACGATTGAGTGAGAATGAT
TCAAATATATTCATGTAATGCCCACCCCCGTGGGATCGGAGGAACATCTC
TGGACAATGATAGATTTATGGCACTGTAAGAACTACAGTTGGGGATATTC
GAGGGTTCGTCATCGGACAGCGACCAATTTCTGTCAGATTTCCACAAAAC
ACATACGCTCAATGCGACATATTAATAATATTTATTCTGTCAAAATACTG
AATAACGATGGATAATGCTCAATACGACCACAAGTAATGCCCCCCCCCCC
CACCATATGTGTGTTCGCACGGTGGTTCATCTCGTTCCCTTTCTGTACCC
CCAAACATAGGCGATGACCTCGCGCTTTCCTTGAGAGCCGCGCGCTGGCT
CGCTTCTCGCTTCCTCGAATGTGATGCCGCTGCTGCCGCCATCACTACCT
TGACCTATCAACAAAAACCGTGGCAAAAACATGAGCACGCTACAGGAGGA
TCACTGCGCGGTGATTACGACAACGGCGACTACGACGATAGCAAGATCGA
CAATGCTGATGAATGTTTGCAGCTCCTACTGGAGCTCGCGGCCGGCCGCC
TCGGCACCGGTGTGGACGGCCTCCACAGTTCCTTATCCCTCATGGGCGGA
GACTTCCGCGGCCTCAGAAGTATGCGAGTCCGCCGGGCATTCGCTGCGGC
GCTGCGCGCCCACCTGCGCACCGTACAGGTGGATGCGGTCTTCCGCTTCG
ATACCCCAAAGCGCTTGGGAGGAAGCAGCAAGAGCGGGACGGGCGTGGCG
GGGCAGGTGGGGGGCGCAGGCGTCGCCGCCACCGTGCAGGGAGTGCTATC
CCCCGGCAGGCTGGCGCTGCCGCCCATATCCAACTGGGCGTCTTTCCGTA
AGTACACGGTTACGATGTGGGTGCGGCCGAACCCTGTGGACGGCGCCGGG
TTCGAGCCGGTGACGCTATTCCGGTTTCGCAACGGAGAAGGCATTGGAGT
GGAGGCTGTCCTGAGCGGCGGCGGCGCAGGC back to topCoding sequence (CDS) from alignment at H-paniculata_contig1813:15848..21378+ >mRNA_H-paniculata_contig1813.4396.1 ID=mRNA_H-paniculata_contig1813.4396.1|Name=mRNA_H-paniculata_contig1813.4396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1782bp|location=Sequence derived from alignment at H-paniculata_contig1813:15848..21378+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGGCGGCGGTGATCGGATGTCGACCACCGCCTTCCTTGCTGCTATGGG CTGCAAGGGCAATTCGCAGATTTCTGCACTTCCGCAAGGATTGCTGCAAG CCTTAGCGCTACTGGATCAGAATGTTGGAGAAGTCTCTGAGCGAGGGTCG CTCAGTGGGGTGGTGGACAGCCTGGTCGAGTGGTTTCTCACGGAGTCAAT GGCTCCTCGATCTGCGGATGATGGGCGGCGGTGATCGGATGTCGACCACC GCCTTCCTTGCTGCTATGGGCTGCAAGGGCAATTCGCAGATTTCTGCACT TCCGCAAGGATTGCTGCAAGCCTTAGCGCTACTGGATCAGAATGTTGGAG AAGTCTCTGAGCGAGGGTCGCTCAGTGGGGTGGTGGACAGCCTGGTCGAG TGGTTTCTCACGGAGTCAATGGCTCCTCGATCTGCGGATGGCGATGACCT CGCGCTTTCCTTGAGAGCCGCGCGCTGGCTCGCTTCTCGCTTCCTCGAAT GTGATGCCGCTGCTGCCGCCATCACTACCTTGACCTATCAACAAAAACCG TGGCAAAAACATGAGCACGCTACAGGAGGATCACTGCGCGGTGATTACGA CAACGGCGACTACGACGATAGCAAGATCGACAATGCTGATGAATGTTTGC AGCTCCTACTGGAGCTCGCGGCCGGCCGCCTCGGCACCGGTGTGGACGGC CTCCACAGTTCCTTATCCCTCATGGGCGGAGACTTCCGCGGCCTCAGAAG TATGCGAGTCCGCCGGGCATTCGCTGCGGCGCTGCGCGCCCACCTGCGCA CCGTACAGGTGGATGCGGTCTTCCGCTTCGATACCCCAAAGCGCTTGGGA GGAAGCAGCAAGAGCGGGACGGGCGTGGCGGGGCAGGTGGGGGGCGCAGG CGTCGCCGCCACCGTGCAGGGAGTGCTATCCCCCGGCAGGCTGGCGCTGC CGCCCATATCCAACTGGGCGTCTTTCCGTAAGTACACGGTTACGATGTGG GTGCGGCCGAACCCTGTGGACGGCGCCGGGTTCGAGCCGGTGACGCTATT CCGGTTTCGCAACGGAGAAGGCATTGGAGTGGAGGCTGTCCTGAGCGGCG GCGGCGCAGGCGCGATGACCTCGCGCTTTCCTTGAGAGCCGCGCGCTGGC TCGCTTCTCGCTTCCTCGAATGTGATGCCGCTGCTGCCGCCATCACTACC TTGACCTATCAACAAAAACCGTGGCAAAAACATGAGCACGCTACAGGAGG ATCACTGCGCGGTGATTACGACAACGGCGACTACGACGATAGCAAGATCG ACAATGCTGATGAATGTTTGCAGCTCCTACTGGAGCTCGCGGCCGGCCGC CTCGGCACCGGTGTGGACGGCCTCCACAGTTCCTTATCCCTCATGGGCGG AGACTTCCGCGGCCTCAGAAGTATGCGAGTCCGCCGGGCATTCGCTGCGG CGCTGCGCGCCCACCTGCGCACCGTACAGGTGGATGCGGTCTTCCGCTTC GATACCCCAAAGCGCTTGGGAGGAAGCAGCAAGAGCGGGACGGGCGTGGC GGGGCAGGTGGGGGGCGCAGGCGTCGCCGCCACCGTGCAGGGAGTGCTAT CCCCCGGCAGGCTGGCGCTGCCGCCCATATCCAACTGGGCGTCTTTCCGT AAGTACACGGTTACGATGTGGGTGCGGCCGAACCCTGTGGACGGCGCCGG GTTCGAGCCGGTGACGCTATTCCGGTTTCGCAACGGAGAAGGCATTGGAG TGGAGGCTGTCCTGAGCGGCGGCGGCGCAGGC back to top
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