mRNA_H-paniculata_contig1813.4394.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1813.4394.1
Unique NamemRNA_H-paniculata_contig1813.4394.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1813.4394.1 vs. uniprot
Match: A0A6H5JXR3_9PHAE (AD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXR3_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 3.270e-25
Identity = 51/75 (68.00%), Postives = 66/75 (88.00%), Query Frame = 3 
Query:  180 QLSVGQRVKIRPKVGAPQEGIVYTHDAITNTVTIKQDLHNTTTHSTIIVFNRSHIEMEVLPGAAVVDDSVALPNI 404
            +L VGQRVK+RPK G  QEG+VYTHDA+TNT+TIKQD+ NT THS I+V+NR+H++++V+PGA VVDD +ALPNI
Sbjct:    3 ELVVGQRVKVRPKAGPAQEGVVYTHDALTNTITIKQDIPNTKTHSAILVYNRAHVQIDVVPGAPVVDDCMALPNI 77
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BLAST of mRNA_H-paniculata_contig1813.4394.1 vs. uniprot
Match: A0A6H5JPK1_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK1_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.540e-13
Identity = 44/88 (50.00%), Postives = 55/88 (62.50%), Query Frame = 2 
Query:  635 FRLLSERGDTDPPLFDERKMSDRDTRMEVLGRVIDTEPLTCATAAAKIAKLHA*LLHWPREPKLATAREILS*TGFLLHISFVVRPGK 898
            FRL   R   +PPLF   K +  DTRME+LG VIDT  LT + +  K+AK+ A L  WP E ++AT  E+ S  G LLH+  VVRPGK
Sbjct:  669 FRLFGTRNSGEPPLFAREKTTSWDTRMEMLGWVIDTVALTISVSQEKVAKMRAMLAEWPVERRVATVTEVRSLLGKLLHLCEVVRPGK 756
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1813.4394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXR3_9PHAE3.270e-2568.00AD domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A6H5JPK1_9PHAE1.540e-1350.00Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1813contigH-paniculata_contig1813:2090..7194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue3.9e-23
Seed eggNOG ortholog2880.D7G4D1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Anticodon-binding domain
EggNOG OGs2E9FP@1,2SFTQ@2759
Ec32 ortholog descriptionNovel Sm-like protein with long N- and C-terminal domains.
Ec32 orthologEc-00_007340.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1665
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1813.4394.1prot_H-paniculata_contig1813.4394.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1813 3216..7030 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929410.778674-UTR-H-paniculata_contig1813:2089..32151622929410.778674-UTR-H-paniculata_contig1813:2089..3215Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1813 2090..3215 -
1691480849.4462898-UTR-H-paniculata_contig1813:2089..32151691480849.4462898-UTR-H-paniculata_contig1813:2089..3215Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1813 2090..3215 -
1622929410.819554-UTR-H-paniculata_contig1813:7030..71941622929410.819554-UTR-H-paniculata_contig1813:7030..7194Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1813 7031..7194 -
1691480849.4714403-UTR-H-paniculata_contig1813:7030..71941691480849.4714403-UTR-H-paniculata_contig1813:7030..7194Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1813 7031..7194 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929410.7907648-CDS-H-paniculata_contig1813:3215..33481622929410.7907648-CDS-H-paniculata_contig1813:3215..3348Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1813 3216..3348 -
1691480849.4558842-CDS-H-paniculata_contig1813:3215..33481691480849.4558842-CDS-H-paniculata_contig1813:3215..3348Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1813 3216..3348 -
1622929410.8068998-CDS-H-paniculata_contig1813:6788..70301622929410.8068998-CDS-H-paniculata_contig1813:6788..7030Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1813 6789..7030 -
1691480849.463599-CDS-H-paniculata_contig1813:6788..70301691480849.463599-CDS-H-paniculata_contig1813:6788..7030Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1813 6789..7030 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1813.4394.1

>prot_H-paniculata_contig1813.4394.1 ID=prot_H-paniculata_contig1813.4394.1|Name=mRNA_H-paniculata_contig1813.4394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MSSEQQLSVGQRVKIRPKVGAPQEGIVYTHDAITNTVTIKQDLHNTTTHS
TIIVFNRSHIEMEVLPGAAVVDDSVALPNIRTATSIHMAPPRGAAVATAP
VDCTPIRGSGGSIGDPCFFVVVFS*
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mRNA from alignment at H-paniculata_contig1813:2090..7194-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1813.4394.1 ID=mRNA_H-paniculata_contig1813.4394.1|Name=mRNA_H-paniculata_contig1813.4394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5105bp|location=Sequence derived from alignment at H-paniculata_contig1813:2090..7194- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTGTTCACTCCACCCCTTTTCAGGCTGTGCGTTTCACCGTAGAGGCCTG
AAAAGCTCAAGCAGTTTTCGGCCTAGGTGCCGGGGGCTGTCGCCCTGCGC
CTGCTGTGTACCCACCTTGGCGGGGGGAGTGTCGGTTGCACAAACGACAT
CCTTTAGCCAGTAGATGTCGTCTGAGCAGCAGCTCAGCGTCGGGCAGAGG
GTCAAAATACGCCCCAAGGTCGGCGCACCGCAAGAGGGCATCGTATACAC
ACATGACGCCATCACCAACACGGTGACGATAAAGCAGGACCTGCACAACA
CCACGACGCACAGCACCATCATCGTCTTCAACCGGAGCCATATAGAGATG
GAGGTGTTACCGGGGGCGGCTGTGGTGGATGACTCGGTGGCTTTACCGAA
CATCAGGTACACCGCATGAACGGGAGGGGGGCAAGGGTAGTGTTGACGAG
TTGGTGTTGGCGTCTTATCACCAACTGAGGGGTGTCGGCGGAATATCAAC
CCACTGCGATGTCGATCGTATTGTTTTCAAGGTGGTTTCAATTGACAGAC
ACGTATATTGTGCCTCCATGAAAGATCAAGCCACTACTGCGTCCCTCAAA
CAGGGGAGCCTTCATACCCAAGCACCGTTGTGATTGGCCAACTGTGGCGA
CGTGCACAGATTATCCTTCAGACATTATATTGTAGTATAATGTACCACCG
CATCTCCGTTGGTTCAGAAATTCCGCATAAGTACGGCCATGTGCATGTAA
TGGTTGGTACAAACGTTGATGGGAGCGGTCAAAAAATTCTGGCAATACAG
GTAAAGGGTGTAAATGTCACGATCATTGAGGGAGCATCATCCGGTGAGCA
GTAATCTAGACGCCGCTTTTTCGCACCAACTCTGTTGTTCATCCGCAGCC
GTTCCACCCACGTAATCTTCCTCTCTTCTCCTTCCTGCTTTTTCCCTGCC
GATAGCTACAGTAGTACAGACAGTACAGCAAATTTACGTGCGTACCGCAC
GTACTATAACCCTTTTAGCGCCGATTGCCGTACAACCCCTGCCTCATAAA
CAGGAGAAAACGACACCTATCTAACGACATAATGACGGGGAAGGGAGCCA
ACGGTGTTCAAACAGAAAATCCAGTAAACACGGATAAACAAAATAAAATA
TTGAATCGAAAACAAAATCTGATGTTTATACAGGCGGAAGAATTTTCGAT
GCTACAGTGTCTTATTATACATGTGGAGTGTGGTTCAGGATTGATACAGC
CGAACAAATGACATGTAAAGCCCACCAGTTCAGTAGTGACTGTCGTGCAA
GTGTGGAAAAAGTTGAAAGAGGGAGAGTAGGTGTGTTGGAGGCTGCTAGC
AAGAAGGGGCGTAGGGTTTCGAAACGAGGGAGAGAGGTCAAGCTGAGCCA
CGCACGCGAACGAAGGGCGTGACAGGGCGAAGGTTATGTGAGGAGCTGAA
GACGTAATGGGGGGAGTTTAGGGATTTTAGGGGATTTTCTTATATATAGG
AGGGAAGAAAAGGAAGCCAAAAAGCCAAAATGCGCGAAGCAACACCGAAC
CCATCAACACCAACACTGCGTTATTGAGGAACCGTTGTGCGAAATCTGTG
TGCGATATGCTGAATTGCCTTTGCCTGGTCGAGATTTTGAGCTTTGAACT
CGAACAACTAACTGGATTGCTTGCGAACTCAAGTGTCAGGCGCGGGCTAC
ATAACTCACGCTATCTTCAGTCTATGAAACAATGAGCTGTTGCTAGATAA
ACTGATGAGATGCATGAACTGCTGAACTGCTGGTAGCTGACGCTGACGCC
ACAACATGGTTCAGTCGGAGCGACTTGTTGATCACGGCGGAGAGAGTGGC
ATAAGCCTTTAATCGTACACACTTGTACGCAGCTGTCATCGTATACTTGT
TTGGACGAAATCAGGACGAACATGGGGGTACTACATCCCTATTTGTCCGC
CTTCGAAACGGTGCCACTCTGTGCGCAATGCACTGGGACGCTTCTGCATA
CCATGAAATGCAGCTTTACATGCCTGACTGTCTGTGCAAGCATAGTAACA
ACCTAGCGGGCATAGATAACAATCAACTGATGATGTGACCTTGAACGCTA
TCGAGAAAGGGTCAATTGTGGGACACACATCGTGGTCACTTCCTTTGAGA
TGACATGTGCTAATCGCCATTTGTCATCAAGTCACAAATGGCCGGTTGTT
ATTCATGGTTCAAGTGAAGAGCCAGTTTCATTACGTTTCACCACGACCCC
GCAATAGCTCGCGCATGATGCACGAATCTTGTCAAGACTACCTGAAAGCG
GAACTAATAGGGTTGATGCAAGTAAGCGGTCTCAACTGAATGACCCCCGA
CAGGTTTGAGATTAAAAACACGGACGGCATGTATCACGATTGCACTGTTC
GCTTCTTGTCGTTACTTCCTTCGATAATCTTCGTTATTGCTGAGAGCTTG
CTATTGGAGCTTGTGCACAGTTCTATGCGAGTTATATTTTGTGTCCCGTG
CTGCGTTTAGATTGATCTCGGGCTACAAACCGTGTGATCCGGCCAGGACT
CCAAGACAGCTAGCTTGTGTCTACCATTTTTACCTATTTTGTTTTCTACA
ATCTACTGGCTTTAGATGCATGCGAATGGTTGTGCCCACTGAACCCACAT
TTTGGTGGTTGGGGGGAGTGATATCGGGTGGTCGATAACCCAAATCCGGT
GCCAACCACCAAAATGAAAATCTACGACTTGATGTTTTTACGTCGTAGCC
CAAAAATTGTGATTTCTCGATTCAAGTATTAAACTTTGTATCGAGCAAAT
CTTAGCTCTAAGACCAAGCTGAGGTTAAACTAGCTAGTGCCAATATACAA
AGTGCACGTCGAGAGCTGTGATCTAGTGCATGTGAAGTGGCGATTTTGGA
TTCCTCTTAAGTTGGTGACCCGTCACGAAAATAGTGAATTTTGAGGATAT
TTCTGTCCGTAGCTCGCTCTTTTTTTGTCTAGCCAATATCGCAATTGCAC
ATGCGCTAGTACTAGTCACAGCGATCACAGCACAGCAAAACGCACACGGT
TCCTCGCAATTGTCGACGAGAACTGCCTCGTCAAAGATGGGATGGCTTGC
CATGTGGCCAAGTTTTTTTCGATACTAATTCCAAGTATACAAAAGTGTAG
AGCATAACTCAGCATGACCTGGCGGCTACGCGTTTCTTTGCTAATTTCAA
GTTTAAAGCCATATACCTAAATGGAGCAGCATTTTAGCAAGATTATATTA
GAAATAAAAATACCGAGTCTTCAAAAGAAGGGAGTGACATGGCAATAACA
CTGCACAATTTTTCCGGCGGGTATAGTCGCTGGCGGGATAGAAGCCACCT
CGTGGCCGATTTACAGCAGTACAACAGTCAGTACAGGCAGTTGCCCAAAT
CGCTCGACAAGATCTACCCCAGGTCCTGGGACAGTTCGAGGTAGGGGTGG
ATCGCGAATTGCTGGTGCCCGGCTCCATGGTCCACGTTATTCCATACGAG
CGTTAACGAAGAGACCGATTTCTTGCAAGCTCCGCCATGAGACGATGGTG
GAGTACTGCACAACGTACTCCTTCGTGCGCTGTATTTGCGACAACACTTC
GGTCCATCGTTGCGTATTGTGCTCAGTAAAAATTGACGTTAAAGAGGCCT
TCCGTCAAGTTCTTGTAGACCCAGCACATCCCACGTCGTTTGGATATGTG
ATGGGTGATTTGGCTGTTGCTAACCTTTGTTTGGAGTTCGGGTGGCGCAG
TAGCCCAGGATTCTGAAGTCTGTTGGCAACAGTGTTGAAACATTCGCACA
CCAAAACCCCATTTTTCGACGCTGTCACGTCTGAGATCGGCCGCAGAACG
GCGACCTCCATTCACATGGCACCTCCTCGTGGCGCCGCCGTCGCCACCGC
ACCCGTTGACTGTACACCAATCCGGGGGAGCGGCGGCAGCATCGGTGATC
CGTGTTTTTTTGTTGTTGTTTTTAGTTGACGTTTCTGTGGATGATAGCAT
ACTGATTGAGGGTCAGTTTTTCGTGGACGGCAGGAGGTGCCTGTGTGTGT
CATAACCCTTAGTGTCCGACCATTTTTCGTTTGTTGAGCGAGCGCGGTGA
TACCGATCCGCCCTTGTTCGATGAGCGCAAAATGTCTGACAGGGATACGC
GCATGGAAGTGCTGGGGAGGGTCATAGATACGGAGCCTCTCACGTGTGCT
ACGGCAGCCGCTAAAATCGCCAAGCTGCACGCGTAATTGTTGCACTGGCC
GCGGGAGCCCAAGTTGGCGACGGCACGAGAGATTTTGTCGTGAACAGGGT
TTTTGTTACACATTTCGTTTGTGGTGCGCCCGGGAAAAATTGTTTGTTCG
TCGCATGCTCGGGTCCGCTGGGGTGGGATGCCCCAAGGCATCACGCCGAA
GGGGAAGTGAAGATTATGGTCGAAGTCGCGAGAGAAATCCGGGTCATGTA
TTGTTTTGTTTCCTGTTCATGTTGTTTTTTTCCGAGGCCGGGATTTTTCT
TGACCGGTATGGGTTGATGTATGTGAGGGTGCGGTCCAGGGCGCTACCAG
CAAGGTCCTGTCCCTTGTAATTGGTCAAGTGTTACTCCATTTTTCCTTTT
CATATTTCTTGTTTCCGAGGCGGGGATTTTTCTTGACTGGCATGGGTTGA
TGTATGTAACGATTCGTCGTTCGAAGAGTTCTTCCGACCGACCGCCCACC
GATGCTTTTGGACGGGGGAAGTAGCGCGGAGGGAAGTTCCGACACAGGGT
CCGGCCGAGTAAGTAACGTGTAGGTGGTCGGTCGGTATTCCCTGCGGGTT
CATGTATGTTCTGAAATAGTGTATGTGCATGCGTGTAGTGGCCATGAGCA
TGCGGCTTCTTAGGGAAATTCTATCCGATTTGTGTTCTGCATGCTACGCT
CATACTAGATTCGTCGTCTAGATGAAACGGCAACGGTATGTGGACTATAG
TAGCGACTGAGTTGGTTAAGTGGCATTGCGGTGCGCATAATTTTGTTCAC
ATCGACACAAATGGAGGTACCTTGGGGTCAACTCATGTCGGGGGGGGGAC
GTCGGCGAGGGATGCCGCGTGTGTTAACTCTACAGTCATCACACATACTG
GCGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig1813:2090..7194-

>mRNA_H-paniculata_contig1813.4394.1 ID=mRNA_H-paniculata_contig1813.4394.1|Name=mRNA_H-paniculata_contig1813.4394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig1813:2090..7194- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGTCTGAGCAGCAGCTCAGCGTCGGGCAGAGGGTCAAAATACGCCC
CAAGGTCGGCGCACCGCAAGAGGGCATCGTATACACACATGACGCCATCA
CCAACACGGTGACGATAAAGCAGGACCTGCACAACACCACGACGCACAGC
ACCATCATCGTCTTCAACCGGAGCCATATAGAGATGGAGGTGTTACCGGG
GGCGGCTGTGGTGGATGACTCGGTGGCTTTACCGAACATCAGATGTCGTC
TGAGCAGCAGCTCAGCGTCGGGCAGAGGGTCAAAATACGCCCCAAGGTCG
GCGCACCGCAAGAGGGCATCGTATACACACATGACGCCATCACCAACACG
GTGACGATAAAGCAGGACCTGCACAACACCACGACGCACAGCACCATCAT
CGTCTTCAACCGGAGCCATATAGAGATGGAGGTGTTACCGGGGGCGGCTG
TGGTGGATGACTCGGTGGCTTTACCGAACATCAGAACGGCGACCTCCATT
CACATGGCACCTCCTCGTGGCGCCGCCGTCGCCACCGCACCCGTTGACTG
TACACCAATCCGGGGGAGCGGCGGCAGCATCGGTGATCCGTGTTTTTTTG
TTGTTGTTTTTAGTTGAAACGGCGACCTCCATTCACATGGCACCTCCTCG
TGGCGCCGCCGTCGCCACCGCACCCGTTGACTGTACACCAATCCGGGGGA
GCGGCGGCAGCATCGGTGATCCGTGTTTTTTTGTTGTTGTTTTTAGTTGA
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