mRNA_H-paniculata_contig18127.4392.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig18127.4392.1 vs. uniprot
Match: A0A6G0WHK2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHK2_9STRA) HSP 1 Score: 133 bits (335), Expect = 7.940e-35 Identity = 71/175 (40.57%), Postives = 113/175 (64.57%), Query Frame = 1
Query: 4 LPAGRKAIRTKWILKRKLK*NGSVIRYKAQLVAQGFSQVDAEGFLETSAPVARMSMLRTVFSLAAEHDFELEGLDIDAAYLNAPVIEELFVRLP---SEFSHFSRDMPFVCLLRKSQYGLKQSGRNWNNTLDDFIVGIGLDRSTTNPYLYFSRDVGEEKYILVAVCADDLIISGR 519
LP GRKAI KW+ K K K +GS+ +YKA+LVA+G+SQ + ET PVA+ + +R + SLAA+H+ EL+ +D++ A+LN+ + E++++ +P ++ + P V L+KS YGLKQ+ R WN T+D F++ IG +S + +Y R +E ILV++ DDLI++
Sbjct: 82 LPQGRKAIGCKWVFKVKEKADGSIDKYKARLVAKGYSQTFGIDYEETFTPVAKFTSIRVLLSLAAKHNLELQQMDVNTAFLNSDLDEDIYMEIPMGLNDHKNPGLSKP-VLKLKKSLYGLKQAPRLWNQTIDGFMLSIGFVKSKADHCIYIKRQ--DEDIILVSLYVDDLILASN 253
BLAST of mRNA_H-paniculata_contig18127.4392.1 vs. uniprot
Match: A0A131XNF9_9ACAR (Putative polyprotein (Fragment) n=1 Tax=Hyalomma excavatum TaxID=257692 RepID=A0A131XNF9_9ACAR) HSP 1 Score: 137 bits (345), Expect = 3.110e-34 Identity = 69/171 (40.35%), Postives = 108/171 (63.16%), Query Frame = 1
Query: 16 RKAIRTKWILKRKLK*NGSVIRYKAQLVAQGFSQVDAEGFLETSAPVARMSMLRTVFSLAAEHDFELEGLDIDAAYLNAPVIEELFVRLPSEFSHFSRDMPFVCLLRKSQYGLKQSGRNWNNTLDDFIVGIGLDRSTTNPYLYFSRDVGEEKYILVAVCADDLIISGRVKK 528
RK I+ KW+ ++K NG + R+KA+LVA G+SQV+ + ET +PV ++ +RT+ ++A E ++++ +DI AAYLN + E +++ P F + +D VCLL+KS YGL+QSGR WN TLD + G+ RS +P +Y S+ K ++V V DDL+I +K
Sbjct: 860 RKVIKCKWVFRKKYDENGHLQRHKARLVACGYSQVEGTDYTETFSPVVKLKSIRTLLAIAVERNWKIHQVDITAAYLNGTLKETVYMEQPQTFVEYEKDE--VCLLKKSLYGLRQSGREWNFTLDKLLKSEGMTRSKADPCVYISK-----KQLIVGVYVDDLLIIAEDEK 1023
BLAST of mRNA_H-paniculata_contig18127.4392.1 vs. uniprot
Match: A0A6B0V3E7_IXORI (Putative polyprotein (Fragment) n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A6B0V3E7_IXORI) HSP 1 Score: 127 bits (320), Expect = 1.070e-33 Identity = 64/171 (37.43%), Postives = 105/171 (61.40%), Query Frame = 1
Query: 7 PAGRKAIRTKWILKRKLK*NGSVIRYKAQLVAQGFSQVDAEGFLETSAPVARMSMLRTVFSLAAEHDFELEGLDIDAAYLNAPVIEELFVRLPSEFSHFSRDMPFVCLLRKSQYGLKQSGRNWNNTLDDFIVGIGLDRSTTNPYLYFSRDVGEEKYILVAVCADDLIISGR 519
P R+ ++ KW+ +K NG + +YKA+LVA G+SQV+ + ET +PV ++ +RT+ ++A E ++++ +DI AAYLN + E +++ P FS +D VCLL+KS YGL+QS + WN TLD + G+ RS +P +Y S+ E+ ++V V D L++
Sbjct: 9 PKERQVVKCKWVFHKKYDENGDLEKYKARLVACGYSQVEGTDYKETFSPVVKLKSIRTLLAIAVERNWKIHQVDITAAYLNGTLKEAVYMEQPQPFSDCKKDE--VCLLKKSLYGLRQSAKEWNLTLDKLLKLQGMTRSKADPCVYVSK----ERRLIVGVYVDGLLVIAE 173
BLAST of mRNA_H-paniculata_contig18127.4392.1 vs. uniprot
Match: H3G6E3_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G6E3_PHYRM) HSP 1 Score: 126 bits (316), Expect = 2.240e-33 Identity = 70/172 (40.70%), Postives = 108/172 (62.79%), Query Frame = 1
Query: 4 LPAGRKAIRTKWILKRKLK*NGSVIRYKAQLVAQGFSQVDAEGFLETSAPVARMSMLRTVFSLAAEHDFELEGLDIDAAYLNAPVIEELFVRLPSEFSHFSRDMP-FVCLLRKSQYGLKQSGRNWNNTLDDFIVGIGLDRSTTNPYLYFSRDVGEEKYILVAVCADDLIISG 516
LP GRKAI +W+ + K G + R+KA+LVA+GFSQ + ET APVA+ + +R V SLAA++ +L +D+ A+LN + E++++ P + D P VC L++S YGLKQS R WN T+DDF++ +G + ++ +Y RD G++ I VA+ DDLI++
Sbjct: 21 LPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPD--GYVDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDLCIYLKRD-GQDM-IFVALYVDDLILAS 188
BLAST of mRNA_H-paniculata_contig18127.4392.1 vs. uniprot
Match: A0A535F6U2_9CHLR (DDE-type integrase/transposase/recombinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535F6U2_9CHLR) HSP 1 Score: 134 bits (337), Expect = 3.710e-33 Identity = 65/172 (37.79%), Postives = 103/172 (59.88%), Query Frame = 1
Query: 4 LPAGRKAIRTKWILKRKLK*NGSVIRYKAQLVAQGFSQVDAEGFLETSAPVARMSMLRTVFSLAAEHDFELEGLDIDAAYLNAPVIEELFVRLPSEFSHFSRDMPFVCLLRKSQYGLKQSGRNWNNTLDDFIVGIGLDRSTTNPYLYFSRDVGEEKYILVAVCADDLIISGR 519
LP+ + + KW+ K K NG+++R+KA+LVA+GFSQ + ET APVA+++ RT+F+LAA +E+ G+D+ AYL + EE+++ P F VC L +S YGLKQ+ R WN + F++ +G RS +P LY +K++ + + DDL+I G+
Sbjct: 935 LPSDKNLVTCKWVFKAKHDANGNIVRFKARLVARGFSQAYGVDYFETYAPVAKLTTYRTIFALAALEQWEIHGMDVITAYLLGKLNEEIYMMQPEGFVRMGMKRNMVCRLLRSLYGLKQAARVWNQKIHAFLIKLGFVRSNADPCLYI------KKFLYITIWVDDLLIVGK 1100
BLAST of mRNA_H-paniculata_contig18127.4392.1 vs. uniprot
Match: H3H7D1_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7D1_PHYRM) HSP 1 Score: 127 bits (318), Expect = 4.300e-33 Identity = 70/176 (39.77%), Postives = 109/176 (61.93%), Query Frame = 1
Query: 4 LPAGRKAIRTKWILKRKLK*NGSVIRYKAQLVAQGFSQVDAEGFLETSAPVARMSMLRTVFSLAAEHDFELEGLDIDAAYLNAPVIEELFVRLPSEFSHFSRDMP-FVCLLRKSQYGLKQSGRNWNNTLDDFIVGIGLDRSTTNPYLYFSRDVGEEKYILVAVCADDLIISGRVKK 528
LP GRKAI +W+ + K G + R+KA+LVA+GFSQ + ET APVA+ + +R V SLAA++ +L +D+ A+LN + E++++ P + D P VC L++S YGLKQS R WN T+DDF++ +G + ++ +Y RD G++ I VA+ DDL+++ K
Sbjct: 39 LPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPD--GYVDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRD-GQDM-IFVALYVDDLVLASSSDK 210
BLAST of mRNA_H-paniculata_contig18127.4392.1 vs. uniprot
Match: A0A401GXA0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GXA0_9APHY) HSP 1 Score: 126 bits (316), Expect = 6.000e-33 Identity = 67/175 (38.29%), Postives = 100/175 (57.14%), Query Frame = 1
Query: 4 LPAGRKAIRTKWILKRKLK*NGSVIRYKAQLVAQGFSQVDAEGFLETSAPVARMSMLRTVFSLAAEHDFELEGLDIDAAYLNAPVIEELFVRLPSEFSHFSRDMPFVCLLRKSQYGLKQSGRNWNNTLDDFIVGIGLDRSTTNPYLYFSRDVGEEKYILVAVCADDLIISGRVKK 528
LP R A+ KW+ ++K G V++YKA+LVAQG+SQ+ FLET APV + +R + +LA +++E+ +D+ AYLN + EE+++R P F+ S VC L K+ YGLKQSG WN L + +G + +P +Y GE + I V V DDL++ K
Sbjct: 9 LPKDRNAVGCKWVFQKKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVHLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFNDGSGH---VCRLHKTLYGLKQSGHKWNRKLHRKLTELGYKQLEADPCVYLQEQKGEVQIITVWV--DDLLLFTNSPK 178
BLAST of mRNA_H-paniculata_contig18127.4392.1 vs. uniprot
Match: A0A6B0V9W6_IXORI (Putative polyprotein n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A6B0V9W6_IXORI) HSP 1 Score: 128 bits (322), Expect = 9.350e-33 Identity = 64/171 (37.43%), Postives = 105/171 (61.40%), Query Frame = 1
Query: 7 PAGRKAIRTKWILKRKLK*NGSVIRYKAQLVAQGFSQVDAEGFLETSAPVARMSMLRTVFSLAAEHDFELEGLDIDAAYLNAPVIEELFVRLPSEFSHFSRDMPFVCLLRKSQYGLKQSGRNWNNTLDDFIVGIGLDRSTTNPYLYFSRDVGEEKYILVAVCADDLIISGR 519
P R+ ++ KW+ +K NG + +YKA+LVA G+SQV+ + ET +PV ++ +RT+ ++A E ++++ +DI AAYLN + E +++ P F +D VCLL+KS YGL+QSG+ WN TLD + G+ RS +P +Y S+ E+ ++V V D L++
Sbjct: 132 PKERQVVKCKWVFHKKYDENGDLEKYKARLVACGYSQVEGTDYKETFSPVVKLKSIRTLLAIAVERNWKIHQVDITAAYLNGTLKEAVYMEQPQPFGDCKKDE--VCLLKKSLYGLRQSGKEWNLTLDKLLKLQGMTRSKADPCVYVSK----ERRLIVGVYVDGLLVIAE 296
BLAST of mRNA_H-paniculata_contig18127.4392.1 vs. uniprot
Match: H3GB80_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB80_PHYRM) HSP 1 Score: 125 bits (313), Expect = 1.170e-32 Identity = 69/172 (40.12%), Postives = 107/172 (62.21%), Query Frame = 1
Query: 4 LPAGRKAIRTKWILKRKLK*NGSVIRYKAQLVAQGFSQVDAEGFLETSAPVARMSMLRTVFSLAAEHDFELEGLDIDAAYLNAPVIEELFVRLPSEFSHFSRDMP-FVCLLRKSQYGLKQSGRNWNNTLDDFIVGIGLDRSTTNPYLYFSRDVGEEKYILVAVCADDLIISG 516
LP GRKAI +W+ + K G + R+KA+LVA+GFSQ + ET APVA+ + +R V SLAA++ +L +D+ A+LN + E++++ P + D P VC L++S YGLKQS R WN T+DDF++ +G ++ +Y RD G++ I VA+ DDL+++
Sbjct: 39 LPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPD--GYVDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKNCESDHCVYLKRD-GQDM-IFVALYVDDLVLAS 206
BLAST of mRNA_H-paniculata_contig18127.4392.1 vs. uniprot
Match: A0A067T5Q4_GALM3 (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067T5Q4_GALM3) HSP 1 Score: 131 bits (330), Expect = 3.200e-32 Identity = 74/169 (43.79%), Postives = 99/169 (58.58%), Query Frame = 1
Query: 4 LPAGRKAIRTKWILKRKLK*NGSVIRYKAQLVAQGFSQVDAEGFLETSAPVARMSMLRTVFSLAAEHDFELEGLDIDAAYLNAPVIEELFVRLPSEFSHFSRDMPFVCLLRKSQYGLKQSGRNWNNTLDDFIVGIGLDRSTTNPYLYFSRDVGEEKYILVAVCADDLII 510
LP RKAI +W+ RK NG +IRYKA+LVAQGFSQ+ F T APV R LR + ++AA + E++ LD+ AYLN + EE+F+R P F + VC L+K+ YGLKQSGR WN LD + + +S + +Y + G YI V V DDL+I
Sbjct: 765 LPPERKAIGCRWVFLRKYNENGEIIRYKARLVAQGFSQIPGMDFDGTFAPVMRHDSLRALLAIAAIKNLEIQQLDVKGAYLNGDLREEIFMRQPDGFHDGTSK---VCRLKKTLYGLKQSGREWNRKLDKVLTELRFSKSNVDHCVYIRTENGHTSYITVWV--DDLMI 928 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18127.4392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18127.4392.1 >prot_H-paniculata_contig18127.4392.1 ID=prot_H-paniculata_contig18127.4392.1|Name=mRNA_H-paniculata_contig18127.4392.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp MSMLRTVFSLAAEHDFELEGLDIDAAYLNAPVIEELFVRLPSEFSHFSRDback to top mRNA from alignment at H-paniculata_contig18127:3788..4318+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18127.4392.1 ID=mRNA_H-paniculata_contig18127.4392.1|Name=mRNA_H-paniculata_contig18127.4392.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=531bp|location=Sequence derived from alignment at H-paniculata_contig18127:3788..4318+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18127:3788..4318+ >mRNA_H-paniculata_contig18127.4392.1 ID=mRNA_H-paniculata_contig18127.4392.1|Name=mRNA_H-paniculata_contig18127.4392.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig18127:3788..4318+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |