mRNA_H-paniculata_contig1812.4388.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1812.4388.1
Unique NamemRNA_H-paniculata_contig1812.4388.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1812.4388.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 7.320e-67
Identity = 113/241 (46.89%), Postives = 148/241 (61.41%), Query Frame = 1
Query:   16 AILDQAARNRITFRSDF------------QTIHIDEAWFYLIRQRDRVHILPGEERVGSTEVQHKSHIPKVIFICATSRPDPSRDFDGKIGIWHICVIKSAQ-------------SNSAWRER--------------ELDVTIEVEWYQEWDKDSLVPALKEKMPWLEGEEMVAQQDGATLHTGKDMPRKLNELGRDRGWNVDLVTQPAQSPDLNVNDMGVFASLKSRVWRERYGTIDGLV 621
            ++ D   R+R+ F SD               +H+DE+WFYL+R++++V +  GE+  G   V H+SH+PK++ I A +RPDP+ DFDGKIGIW ICVI++AQ             + S WRE               E D TI+ EWY++W  D L+PA+KEKMPWL  + +V QQDGA+ HTGK  P  LN  G  RGW V+LVTQPAQSPDLN+ND+G FASLK RVW     +ID LV
Sbjct:  124 SLSDAQKRHRMDFISDRVDEPIGEYLDQGNVVHLDESWFYLMREKEKVRVFSGEDVPGPPRVPHESHLPKIMVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364          
BLAST of mRNA_H-paniculata_contig1812.4388.1 vs. uniprot
Match: A0A448ZNT1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNT1_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.140e-36
Identity = 98/285 (34.39%), Postives = 149/285 (52.28%), Query Frame = 1
Query:    1 MNQVDAILDQAARNRITFRSDFQTIHIDEAWFYLIRQRDRVHILPGEERVGSTEVQHKSHIPKVIFICATSRPDPSRD----FDGKIGIWHICVIKSAQSNSAWRERELDVT----IEVEWYQEWDKDSLVPALKEKMPWLEGE---EMVAQQDGATLHTGKDMPRKLNELGRDRGWNVDLVTQPAQSPDLNVNDMGVFASLKSRVWRERYGTIDGLVEGVKSMYDAFDAATLERMRQSLFTRYNQVLKALGGNDVQLQHTETKERQRGGSLPKSVKIDPEAFDA 822
            + +V+ IL+    N   F   F+ IHIDE WFYL R +   ++LPGE    ST  + K+H+ KV+F+CAT+RP    +    FDGKIGIW   V + A+ +S  R +   VT    ++ E Y+    + ++PA+ EK  W  G    E+  Q+D A  H    +  ++      +GWN+ + TQP  SPD+NV D+G F S++S  +++R   ID L+  V+  +D     TL  +  SL       L   G N+ +L H       R G+LP S+  DP+  +A
Sbjct:  243 LKRVEWILEHIDDNG-RFDDWFKWIHIDEKWFYLKRTKQTTYLLPGEAEPKSTS-KSKNHMTKVMFLCATARPRWDTNNCAWFDGKIGIWPFVVKEPAKRSSVNRPKGTLVTKPQNVDGEVYKRMLLEKVLPAIYEK--WPRGSSTPEIFIQEDNAKPHKAT-IREEVKAAAASKGWNITVKTQPPNSPDMNVLDLGFFNSIQSLQYKKRSKDIDHLIANVEEAFDECKRETLNNVFLSLQACMEASLGVDGDNNYKLPHMGKASLMREGTLPISIICDPDRINA 522          
BLAST of mRNA_H-paniculata_contig1812.4388.1 vs. uniprot
Match: I6THG9_PSEMU (Tranposase n=1 Tax=Pseudo-nitzschia multiseries TaxID=37319 RepID=I6THG9_PSEMU)

HSP 1 Score: 141 bits (356), Expect = 5.140e-35
Identity = 90/271 (33.21%), Postives = 136/271 (50.18%), Query Frame = 1
Query:   52 FRSDFQTIHIDEAWFYLIRQRDRVHILPGEERVGSTEVQHKSHIPKVIFICATSRP----DPSRDFDGKIGIWHICVIKSAQSNSAWRERELDVT-----IEVEWYQEWDKDSLVPALKEKMP--WLEGEEMVAQQDGATLHTGKDMPRKLNELGRDRGWNVDLVTQPAQSPDLNVNDMGVFASLKSRVWRERYGTIDGLVEGVKSMYDAFDAATLERMRQSLFTRYNQVLKALGGNDVQLQHTETKERQRGGSLPKSVKIDPEAFDAAVE 831
            F   + TIHIDE WFYL     + ++  GE    ST  + K  I KV+F+CA +RP    D +  FDGKIGIW   V + AQ NS  R R   VT     +    YQ+   + ++PA++EK P  W +   +  Q+D A  H  +     + E  R+ GWN+ + TQP  SPD NV D+G FAS+++  +++R   ID L+  V+          L  +  SL     + +K  G N  +L+H   ++  +  +LP S+  D +    A +
Sbjct:  226 FEDMYDTIHIDEKWFYLKTTNQKTYLCSGEPEPHST-CKSKRFIEKVMFLCAVARPRHDADRNAGFDGKIGIWPFVVKEPAQRNSVNRPRGTMVTKNIPSVNAAEYQKMMLEKVLPAIQEKFPVCW-KSRPIFIQEDNAKPHHLRSRAA-VREAAREAGWNITVTTQPPNSPDFNVLDLGFFASIQALQYKKRAKNIDQLIANVEEALVETSTIALNSIFLSLQCALEESIKVQGNNSYKLRHMGKEKLLKEDNLPVSITCDADTVTFAQQ 493          
BLAST of mRNA_H-paniculata_contig1812.4388.1 vs. uniprot
Match: A0A6A4Z9D8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z9D8_9STRA)

HSP 1 Score: 135 bits (341), Expect = 6.280e-34
Identity = 87/273 (31.87%), Postives = 141/273 (51.65%), Query Frame = 1
Query:   70 TIHIDEAWFYLIRQRDRVHILPGEERVGSTEVQHKSHIPKVIFICATSRPD----PSRDFDGKIGIWHICVIKSAQSNSAWRERELDVT----IEVEWYQEWDKDSLVPALKEKMPWLEGEEMVAQQDGATLHTGKDMPRKLNELGRDRGWNVDLVTQPAQSPDLNVNDMGVFASLKSRVWRERYGTIDGLVEGVKSMYDAFDAATLERMRQSLFTRYNQVLKALGGNDVQLQHTETKERQRGGSLPKSVKIDPEAFDAAVEWWIDGNEERCK 864
            T+HIDE WFY+ +Q  R ++   +E V + + + K HI KV+F+ A +RP       R +DG+IG+W     + A  +S  R+R  DVT    +  + Y+ +  D ++PA++ K P  +  ++  QQD A  H   + P  +   GR  GW + L +QPAQSPDLNV D+G F +++S   +    T+D LV  V   ++  +   L++   +L      + K  G ND +L H +     + G LP  ++ D +   A     +D  EER +
Sbjct:   44 TVHIDEKWFYVTKQNRRYYLW-SDEAVPTRKCRSKKHITKVMFLTAVARPRYDARNKRMWDGRIGMWPFVKTRPALRSSKNRKRGDDVTEPFTVTRDVYRSFLIDKVIPAVRSKWPSSKKNQIWIQQDNAKPHVSVNDPAVV-AAGRQGGWTISLCSQPAQSPDLNVLDLGYFNAIQSLQHQMATYTLDDLVVAVVKSFEELECTVLDKTFMTLQKVMECIFKMGGDNDFKLPHQKKHGLVKEGPLPTRLECDEDVCAA-----VDAMEERSE 309          
BLAST of mRNA_H-paniculata_contig1812.4388.1 vs. uniprot
Match: UPI001C2701CF (uncharacterized protein LOC121760366 n=3 Tax=Salvia splendens TaxID=180675 RepID=UPI001C2701CF)

HSP 1 Score: 136 bits (342), Expect = 2.530e-33
Identity = 83/278 (29.86%), Postives = 136/278 (48.92%), Query Frame = 1
Query:   28 QAARNRITFRSDFQTIHIDEAWFYLIRQRDRVHILPGEERVGSTEVQHKSHIPKVIFICATSRP----DPSRDFDGKIGIWHICVIKSAQSNSAWRERELDVTIEV-----EWYQEWDKDSLVPALKEKMPWLEGEEMVAQQDGATLHTGKDMPRKLNELGRDRGWNVDLVTQPAQSPDLNVNDMGVFASLKSRVWRERYGTIDGLVEGVKSMYDAFDAATLERMRQSLFTRYNQVLKALGGNDVQLQHTETKERQRGGSLPKSVKIDPEAFDAAVEW 834
            Q  + R+ ++S    +HIDE WFY+ +  DR ++LP E+       + K  I KV+F+CA SRP    D    +DGK+GI+    +   Q  S  R R    T  V     E  ++   + ++PA+K + P    +++  QQD AT H    M  +   +    G+ + L+ QPA SPD N+ D+G F +++S  + +   T+D LV  V S +      TL R+  SL     ++L+  GGN  ++ H      QR   LP  ++++       ++W
Sbjct:  154 QITQGRVPYQSMHNVVHIDEKWFYMTKASDRYYLLPDEDEPYRA-CKSKRFITKVMFMCAVSRPHFGMDGQPTYDGKVGIFPFTEVMPTQRRSKNRPRGTMETKAVHSVTKEVMRDCLINKIIPAIKARWPVWASKDIYIQQDNATPHITA-MDPEFQAVANSDGFRIQLICQPANSPDTNILDLGFFRAIQSLQYEKPCKTVDELVGNVCSYFAELSPQTLNRVFLSLQACLTEILRCRGGNGYKVPHINKDRLQRTVGLPNQLEVEEGVVREVLQW 429          
BLAST of mRNA_H-paniculata_contig1812.4388.1 vs. uniprot
Match: UPI002008F034 (uncharacterized protein LOC125206616 n=4 Tax=Salvia TaxID=21880 RepID=UPI002008F034)

HSP 1 Score: 133 bits (335), Expect = 2.510e-32
Identity = 83/268 (30.97%), Postives = 133/268 (49.63%), Query Frame = 1
Query:   28 QAARNRITFRSDFQTIHIDEAWFYLIRQRDRVHILPGEERVGSTEVQHKSHIPKVIFICATSRP----DPSRDFDGKIGIWHICVIKSAQSNSAWRERELDVT-----IEVEWYQEWDKDSLVPALKEKMPWLEGEEMVAQQDGATLHTGKDMPRKLNELGRDRGWNVDLVTQPAQSPDLNVNDMGVFASLKSRVWRERYGTIDGLVEGVKSMYDAFDAATLERMRQSLFTRYNQVLKALGGNDVQLQHTETKERQRGGSLPKSVKID 804
            Q  + R+ ++S    +HIDE WFY+ +  DR ++LP E+    +  + K +I KV+F+CA SRP    D    +DGK+GI+    +  AQ  S  R R    T     +  E  ++   + ++PA+K K P    +++  QQD AT H    M           G+ + L+ QPA SPD N+ D+G F +++S  + +   T+D LV  V S +      TL R+  SL     ++L   GGN  ++ H      QR   LP  ++++
Sbjct:  154 QITQGRVQYQSMHNVVHIDEKWFYMTKASDRYYLLPDEDEPYRS-CKSKRYITKVMFMCAVSRPHFGMDGQATYDGKVGIFPFTEVLPAQRKSKNRPRGTMETKAIHSVTKEVMRDCLINKIIPAIKAKWPVWASKDIYIQQDNATPHITA-MDPDFQAAANSDGFKIQLICQPANSPDTNILDLGFFRAIQSLQYEKPCKTVDELVGNVCSSFAELSPQTLNRVFLSLQACLTEILLCRGGNGYKVPHINKDRLQRTVGLPNVLEVE 419          
BLAST of mRNA_H-paniculata_contig1812.4388.1 vs. uniprot
Match: UPI000B8AB67D (uncharacterized protein LOC110800636 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AB67D)

HSP 1 Score: 132 bits (333), Expect = 1.620e-31
Identity = 84/277 (30.32%), Postives = 143/277 (51.62%), Query Frame = 1
Query:   52 FRSDFQTIHIDEAWFYLIRQRDRVHILPGEERVGSTEVQHKSHIPKVIFICATSRPDPSRD----FDGKIGIWHICVIKSAQSNSAWRERELDVTIEVEWYQEWDK--------DSLVPALKEKMPWLEGEEMVAQQDGATLHTGKDMPRKLNELGRDRGWNVDLVTQPAQSPDLNVNDMGVFASLKSRVWRERYGTIDGLVEGVKSMYDAFDAATLERMRQSLFTRYNQVLKALGGNDVQLQHTETKERQRGGSLPKSVKIDPEAFDAAVEWWIDG 846
            F S +  IHIDE WFY+ R+  R ++L GEE       Q+ +++ KV+F+C  +RP    +    FDGK+GI+       A+ +S  RER    TIE++      K        D L+PA++ K PW   ++++ QQD +  H   +    L+   ++ G+N+ L+ QP QSPDLNV D+G F +++S   ++    ++ LV+ VK  Y+A+D   +      L     ++L   GGN+ +  H    +    G LP +V++  +   +  ++  +G
Sbjct:  265 FSSLYNVIHIDEKWFYMSRKTQRYYLLAGEEEPYRA-TQNSNYLVKVMFLCGIARPIIGYNGEVLFDGKLGIFPFTEEVPAKRSSKNRERG---TIEIKAITSVTKEVIRRKIIDELLPAIRSKWPWFASKDILIQQDNSRPHINPNDAEFLDAATQE-GFNIQLICQPPQSPDLNVLDLGFFRAIQSLQHQKFPRDVEALVKAVKEAYEAYDPKLINYTWLQLQYVMLEILGVKGGNNYKSPHKGKAKMDNLGLLPDTVEVPDDLLTSIRQYMQEG 536          
BLAST of mRNA_H-paniculata_contig1812.4388.1 vs. uniprot
Match: A0A8I6Y8D2_HORVV (HTH_Tnp_Tc3_2 domain-containing protein n=3 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6Y8D2_HORVV)

HSP 1 Score: 129 bits (323), Expect = 1.710e-31
Identity = 87/272 (31.99%), Postives = 135/272 (49.63%), Query Frame = 1
Query:   49 TFRSDFQTIHIDEAWFYLIRQRDRVHILPGEERVGSTEVQHKSHIPKVIFICATSRPDPSRD----FDGKIGIWHICVIKSAQSNSAWRER---ELDV--TIEVEWYQEWDKDSLVPALKEKMPWLEGEEMV-AQQDGATLHTGKDMPRKLNELGRDRGWNVDLVTQPAQSPDLNVNDMGVFASLKSRVWRERYGTIDGLVEGVKSMYDAFDAATLERMRQSLFTRYNQVLKALGGNDVQLQHTETKERQRGGSLPKSVKIDPEAFDAAVEW 834
            TFR D   +HIDE WFY  R+   ++ L   E     E +HK+HI K++F+ A ++P         FDGKIG+W       A+  S  R R   EL    T++ E  +E+    ++PA+KEK P  +    +  QQD A  H   D P  L E  R  GW++ ++ QP  SPD N+ D+G+FAS+++   ++   T+  +V+ V      +    L R+  S      +++K  G     + H + K   R G LP  + ID E  + A+E+
Sbjct:   58 TFRVDMDVVHIDEKWFYRTRKTQNMY-LSHRENAPRQECKHKNHIQKIMFLSAMAKPRYDAQGNCVFDGKIGVWAYTEWVQAKKKSQNRLRGTWELKPCHTVDREKSREYLVKYVLPAIKEKWPESDRWNTIYVQQDNARTHIKPDGPLFLQEAARG-GWDIRMIYQPPNSPDTNILDLGLFASIEAMFHKKMPKTLADIVQKVNQSLAEYPHQKLNRIWLSHQACMREIIKHKGSIHYAVPHLKKKALARQGLLPVRLTIDLEYVEQAIEF 327          
BLAST of mRNA_H-paniculata_contig1812.4388.1 vs. uniprot
Match: Q49KC8_PEA (Transposase n=2 Tax=Pisum sativum TaxID=3888 RepID=Q49KC8_PEA)

HSP 1 Score: 130 bits (326), Expect = 2.680e-31
Identity = 83/262 (31.68%), Postives = 137/262 (52.29%), Query Frame = 1
Query:   52 FRSDFQTIHIDEAWFYLIRQRDRVHILPGEERVGSTEVQHKSHIPKVIFICATSRP----DPSRDFDGKIGIWHICVIKSAQSNSAWRERELDVT-----IEVEWYQEWDKDSLVPALKEKMPWLEGEEMV-AQQDGATLHTGKDMPRKLNELGRDRGWNVDLVTQPAQSPDLNVNDMGVFASLKSRVWRERYGTIDGLVEGVKSMYDAFDAATLERMRQSLFTRYNQVLKALGGNDVQLQHTETKERQRGGSLPKSVKIDP 807
            F+S    IHIDE WFY+ ++ ++ ++LP E+    T  + K+ I KV+F+ A +RP    + +  F GKIG++     + A  +S  R     VT     +  +  + +  D ++PA++EK P  E E  +  QQD A  H   D P    E     G+++ L+ QPA SPDLN+ D+G F++++S  ++E   TID L+  V   ++ F +    R+  SL     +++K  G N  ++ H   +  +R G LP  +K DP
Sbjct:  140 FKSMHNIIHIDEKWFYMTKKSEKYYLLPDEDEPYRT-CKSKNFIAKVMFLVAQTRPRFDSEENETFSGKIGVFPFVTHEPAIRSSINRVAGTMVTKAITTVNRDVVRSFLIDKVLPAIREKWPRDEFESTIFIQQDNARTHINHDDPL-FREAATKDGFDIRLMCQPANSPDLNILDLGFFSAIQSLQYKEAPKTIDELISAVVKSFENFPSIKSNRIFVSLQLCMIEIMKEKGSNKYKIPHVNKERLERVGQLPIQIKCDP 399          
BLAST of mRNA_H-paniculata_contig1812.4388.1 vs. uniprot
Match: A0A0W8C4B7_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8C4B7_PHYNI)

HSP 1 Score: 128 bits (321), Expect = 4.230e-31
Identity = 87/286 (30.42%), Postives = 138/286 (48.25%), Query Frame = 1
Query:   28 QAARNRITFRSDFQTIHIDEAWFYLIRQRDRVHILPGEERVGSTE-----VQHKSHIPKVIFICATSRPDPSRDFDGKIGIWHICVIKSAQSNSAWRE------RELDVTIEVEWYQEWDKDSLVPALKEKMPWLEGEEMVA--------QQDGATLHTGKDMPRKLNELGRDRGWNVDLVTQPAQSPDLNVNDMGVFASLKSRVWRERYGTIDGLVEGVKSMYDAFDAATLERMRQSLFTRYNQVLKALGGNDVQLQHTETKERQRGGSLPKSVKIDPEAFDAAV 828
            Q+   +  F   + T+H+DE WFY+ +   +V++L G++     +     VQ K HI KV+F+CA +RP    ++DGK+G+W +      Q  S  R+      R + +T EV  Y+    + ++PA+K K  W+  E +          QQD A  H   D P  L   G   GW++    QPAQSPDLNV D G F +++S        T + L+  V+  + +    TL +   S+      +++  GGN   L H +  +  R G LP S+  DP  + A +
Sbjct:   40 QSTDRQPVFAPMYDTVHVDEKWFYVKKIGQKVYLLTGQDGTPCEDAPVQFVQSKRHILKVMFLCAVARP--RGNWDGKVGMWPVVEKYVTQRRSVNRDAGVEELRPISMTREV--YRRMLLEDVIPAIKAKWEWVRDEGLGVPLVSPIWVQQDNAKPHVLPDDPEVL-VAGCAGGWSILFRNQPAQSPDLNVLDCGFFNAIQSLQSVTVPRTAEDLISEVERAFASTTTTTLNKTFLSVQLIMQSIMRHNGGNAFGLSHIQKDKLLRAGELPDSLSCDPALYRATL 320          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1812.4388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE7.320e-6746.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A448ZNT1_9STRA1.140e-3634.39Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
I6THG9_PSEMU5.140e-3533.21Tranposase n=1 Tax=Pseudo-nitzschia multiseries Ta... [more]
A0A6A4Z9D8_9STRA6.280e-3431.87Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
UPI001C2701CF2.530e-3329.86uncharacterized protein LOC121760366 n=3 Tax=Salvi... [more]
UPI002008F0342.510e-3230.97uncharacterized protein LOC125206616 n=4 Tax=Salvi... [more]
UPI000B8AB67D1.620e-3130.32uncharacterized protein LOC110800636 n=1 Tax=Spina... [more]
A0A8I6Y8D2_HORVV1.710e-3131.99HTH_Tnp_Tc3_2 domain-containing protein n=3 Tax=Ho... [more]
Q49KC8_PEA2.680e-3131.68Transposase n=2 Tax=Pisum sativum TaxID=3888 RepID... [more]
A0A0W8C4B7_PHYNI4.230e-3130.42Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1812contigH-paniculata_contig1812:13631..14500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue9.3e-28
Seed eggNOG ortholog157072.XP_008866696.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMKC@1,2QQNW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size870
Cds size870
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929410.2436-CDS-H-paniculata_contig1812:13630..145001622929410.2436-CDS-H-paniculata_contig1812:13630..14500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1812 13631..14500 -
1691480849.308409-CDS-H-paniculata_contig1812:13630..145001691480849.308409-CDS-H-paniculata_contig1812:13630..14500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1812 13631..14500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1812.4388.1prot_H-paniculata_contig1812.4388.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1812 13631..14500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1812.4388.1

>prot_H-paniculata_contig1812.4388.1 ID=prot_H-paniculata_contig1812.4388.1|Name=mRNA_H-paniculata_contig1812.4388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=290bp
MNQVDAILDQAARNRITFRSDFQTIHIDEAWFYLIRQRDRVHILPGEERV
GSTEVQHKSHIPKVIFICATSRPDPSRDFDGKIGIWHICVIKSAQSNSAW
RERELDVTIEVEWYQEWDKDSLVPALKEKMPWLEGEEMVAQQDGATLHTG
KDMPRKLNELGRDRGWNVDLVTQPAQSPDLNVNDMGVFASLKSRVWRERY
GTIDGLVEGVKSMYDAFDAATLERMRQSLFTRYNQVLKALGGNDVQLQHT
ETKERQRGGSLPKSVKIDPEAFDAAVEWWIDGNEERCKQ*
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mRNA from alignment at H-paniculata_contig1812:13631..14500-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1812.4388.1 ID=mRNA_H-paniculata_contig1812.4388.1|Name=mRNA_H-paniculata_contig1812.4388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=870bp|location=Sequence derived from alignment at H-paniculata_contig1812:13631..14500- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACCAGGTAGATGCTATCCTGGACCAAGCAGCAAGGAACCGCATCAC TTTCAGGAGCGACTTCCAAACAATTCACATCGACGAAGCGTGGTTTTACC TAATTCGCCAAAGGGATCGCGTCCATATACTCCCCGGGGAGGAAAGGGTG GGGTCCACCGAAGTACAGCACAAGAGTCACATCCCCAAGGTAATCTTCAT CTGCGCCACTTCACGTCCAGACCCTTCTCGCGATTTCGACGGTAAGATTG GAATCTGGCATATTTGCGTCATCAAGTCGGCGCAAAGTAATTCGGCCTGG CGTGAACGGGAGCTCGACGTGACCATTGAGGTCGAGTGGTACCAGGAGTG GGACAAGGACTCTCTTGTCCCAGCATTGAAGGAAAAGATGCCGTGGTTGG AGGGTGAGGAAATGGTCGCGCAGCAGGACGGAGCGACCCTCCATACGGGG AAAGACATGCCGCGGAAGCTCAACGAACTCGGGAGGGACCGGGGGTGGAA CGTCGATCTCGTAACTCAGCCCGCGCAATCACCAGATCTCAACGTAAACG ATATGGGGGTTTTTGCATCTCTGAAAAGTAGGGTTTGGAGGGAGCGTTAC GGTACGATAGACGGCCTTGTGGAGGGGGTAAAGAGCATGTACGATGCGTT CGACGCGGCAACCTTAGAGAGGATGCGGCAGAGCCTCTTTACGCGGTACA ATCAGGTCTTGAAGGCGCTAGGAGGTAACGATGTCCAGTTACAGCACACC GAAACCAAGGAAAGACAGCGAGGGGGAAGTCTGCCAAAATCGGTCAAAAT CGACCCAGAGGCATTCGACGCGGCGGTAGAATGGTGGATTGATGGGAACG AGGAACGCTGCAAACAATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1812:13631..14500-

>mRNA_H-paniculata_contig1812.4388.1 ID=mRNA_H-paniculata_contig1812.4388.1|Name=mRNA_H-paniculata_contig1812.4388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1740bp|location=Sequence derived from alignment at H-paniculata_contig1812:13631..14500- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACCAGGTAGATGCTATCCTGGACCAAGCAGCAAGGAACCGCATCAC
TTTCAGGAGCGACTTCCAAACAATTCACATCGACGAAGCGTGGTTTTACC
TAATTCGCCAAAGGGATCGCGTCCATATACTCCCCGGGGAGGAAAGGGTG
GGGTCCACCGAAGTACAGCACAAGAGTCACATCCCCAAGGTAATCTTCAT
CTGCGCCACTTCACGTCCAGACCCTTCTCGCGATTTCGACGGTAAGATTG
GAATCTGGCATATTTGCGTCATCAAGTCGGCGCAAAGTAATTCGGCCTGG
CGTGAACGGGAGCTCGACGTGACCATTGAGGTCGAGTGGTACCAGGAGTG
GGACAAGGACTCTCTTGTCCCAGCATTGAAGGAAAAGATGCCGTGGTTGG
AGGGTGAGGAAATGGTCGCGCAGCAGGACGGAGCGACCCTCCATACGGGG
AAAGACATGCCGCGGAAGCTCAACGAACTCGGGAGGGACCGGGGGTGGAA
CGTCGATCTCGTAACTCAGCCCGCGCAATCACCAGATCTCAACGTAAACG
ATATGGGGGTTTTTGCATCTCTGAAAAGTAGGGTTTGGAGGGAGCGTTAC
GGTACGATAGACGGCCTTGTGGAGGGGGTAAAGAGCATGTACGATGCGTT
CGACGCGGCAACCTTAGAGAGGATGCGGCAGAGCCTCTTTACGCGGTACA
ATCAGGTCTTGAAGGCGCTAGGAGGTAACGATGTCCAGTTACAGCACACC
GAAACCAAGGAAAGACAGCGAGGGGGAAGTCTGCCAAAATCGGTCAAAAT
CGACCCAGAGGCATTCGACGCGGCGGTAGAATGGTGGATTGATGGGAACG
AGGAACGCTGCAAACAATAAATGAACCAGGTAGATGCTATCCTGGACCAA
GCAGCAAGGAACCGCATCACTTTCAGGAGCGACTTCCAAACAATTCACAT
CGACGAAGCGTGGTTTTACCTAATTCGCCAAAGGGATCGCGTCCATATAC
TCCCCGGGGAGGAAAGGGTGGGGTCCACCGAAGTACAGCACAAGAGTCAC
ATCCCCAAGGTAATCTTCATCTGCGCCACTTCACGTCCAGACCCTTCTCG
CGATTTCGACGGTAAGATTGGAATCTGGCATATTTGCGTCATCAAGTCGG
CGCAAAGTAATTCGGCCTGGCGTGAACGGGAGCTCGACGTGACCATTGAG
GTCGAGTGGTACCAGGAGTGGGACAAGGACTCTCTTGTCCCAGCATTGAA
GGAAAAGATGCCGTGGTTGGAGGGTGAGGAAATGGTCGCGCAGCAGGACG
GAGCGACCCTCCATACGGGGAAAGACATGCCGCGGAAGCTCAACGAACTC
GGGAGGGACCGGGGGTGGAACGTCGATCTCGTAACTCAGCCCGCGCAATC
ACCAGATCTCAACGTAAACGATATGGGGGTTTTTGCATCTCTGAAAAGTA
GGGTTTGGAGGGAGCGTTACGGTACGATAGACGGCCTTGTGGAGGGGGTA
AAGAGCATGTACGATGCGTTCGACGCGGCAACCTTAGAGAGGATGCGGCA
GAGCCTCTTTACGCGGTACAATCAGGTCTTGAAGGCGCTAGGAGGTAACG
ATGTCCAGTTACAGCACACCGAAACCAAGGAAAGACAGCGAGGGGGAAGT
CTGCCAAAATCGGTCAAAATCGACCCAGAGGCATTCGACGCGGCGGTAGA
ATGGTGGATTGATGGGAACGAGGAACGCTGCAAACAATAA
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