mRNA_H-paniculata_contig1812.4389.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1812.4389.1
Unique NamemRNA_H-paniculata_contig1812.4389.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1812.4389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1812contigH-paniculata_contig1812:14762..15278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size517
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1812.4389.1prot_H-paniculata_contig1812.4389.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1812 14938..15249 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929410.0273356-UTR-H-paniculata_contig1812:14761..149371622929410.0273356-UTR-H-paniculata_contig1812:14761..14937Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1812 14762..14937 +
1691480849.230805-UTR-H-paniculata_contig1812:14761..149371691480849.230805-UTR-H-paniculata_contig1812:14761..14937Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1812 14762..14937 +
1622929410.0543783-UTR-H-paniculata_contig1812:15249..152781622929410.0543783-UTR-H-paniculata_contig1812:15249..15278Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1812 15250..15278 +
1691480849.2460623-UTR-H-paniculata_contig1812:15249..152781691480849.2460623-UTR-H-paniculata_contig1812:15249..15278Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1812 15250..15278 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929410.0424535-CDS-H-paniculata_contig1812:14937..152491622929410.0424535-CDS-H-paniculata_contig1812:14937..15249Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1812 14938..15249 +
1691480849.2387078-CDS-H-paniculata_contig1812:14937..152491691480849.2387078-CDS-H-paniculata_contig1812:14937..15249Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1812 14938..15249 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1812.4389.1

>prot_H-paniculata_contig1812.4389.1 ID=prot_H-paniculata_contig1812.4389.1|Name=mRNA_H-paniculata_contig1812.4389.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MSELSTKEAGLAEVVMVSKLAPQTVWRLHESGTGLGEVLRRRVTVGGRFV
RRPAQRSKSKWSRKGPFFYISFSQRFRNYFGTMCENGMIVVGVYVHRFNS
SHT*
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mRNA from alignment at H-paniculata_contig1812:14762..15278+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1812.4389.1 ID=mRNA_H-paniculata_contig1812.4389.1|Name=mRNA_H-paniculata_contig1812.4389.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=517bp|location=Sequence derived from alignment at H-paniculata_contig1812:14762..15278+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGTACACGCGCTCAAAGTTATCTGGGATATTGGTCGCCAACTCCAAGC
TTCTCCATCAACTCTGGCGCAGCGCCCTTGGGAAGGCGTTTGTTACCGGG
AGGTAGGGCTAAAGCGTACGATACGGCCAACGCGTTTCGACCTTCCTCGC
TCAGCTCGCATTTTTATCGCGGGCTGATGAGCGAGCTGTCGACAAAAGAG
GCCGGACTCGCCGAAGTGGTAATGGTTTCGAAACTGGCGCCGCAGACGGT
CTGGAGGCTGCACGAGAGTGGTACAGGTCTCGGCGAGGTGCTGAGACGTC
GTGTGACGGTAGGGGGGCGCTTTGTCCGCCGCCCGGCGCAGCGCAGCAAG
TCAAAATGGAGCCGAAAAGGGCCGTTTTTTTATATTTCCTTTTCTCAACG
TTTTCGGAACTATTTCGGAACAATGTGCGAGAACGGAATGATTGTTGTTG
GCGTTTACGTCCATAGGTTCAATTCAAGCCATACATGACCGAAAAACTCT
TCGTATTCGTAGAGAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1812:14762..15278+

>mRNA_H-paniculata_contig1812.4389.1 ID=mRNA_H-paniculata_contig1812.4389.1|Name=mRNA_H-paniculata_contig1812.4389.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig1812:14762..15278+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCGAGCTGTCGACAAAAGAGGCCGGACTCGCCGAAGTGGTAATGGT
TTCGAAACTGGCGCCGCAGACGGTCTGGAGGCTGCACGAGAGTGGTACAG
GTCTCGGCGAGGTGCTGAGACGTCGTGTGACGGTAGGGGGGCGCTTTGTC
CGCCGCCCGGCGCAGCGCAGCAAGTCAAAATGGAGCCGAAAAGGGCCGTT
TTTTTATATTTCCTTTTCTCAACGTTTTCGGAACTATTTCGGAACAATGT
GCGAGAACGGAATGATTGTTGTTGGCGTTTACGTCCATAGGTTCAATTCA
AGCCATACATGAATGAGCGAGCTGTCGACAAAAGAGGCCGGACTCGCCGA
AGTGGTAATGGTTTCGAAACTGGCGCCGCAGACGGTCTGGAGGCTGCACG
AGAGTGGTACAGGTCTCGGCGAGGTGCTGAGACGTCGTGTGACGGTAGGG
GGGCGCTTTGTCCGCCGCCCGGCGCAGCGCAGCAAGTCAAAATGGAGCCG
AAAAGGGCCGTTTTTTTATATTTCCTTTTCTCAACGTTTTCGGAACTATT
TCGGAACAATGTGCGAGAACGGAATGATTGTTGTTGGCGTTTACGTCCAT
AGGTTCAATTCAAGCCATACATGA
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