mRNA_H-paniculata_contig18119.4386.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig18119.4386.1 vs. uniprot
Match: A0A6H5JNZ7_9PHAE (Helicase C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ7_9PHAE) HSP 1 Score: 194 bits (492), Expect = 6.150e-56 Identity = 109/160 (68.12%), Postives = 123/160 (76.88%), Query Frame = 1
Query: 1 QAMRTCRRKMIAEALGEQGGDDVCRG------TCDVCSGGAQAAVNT---DFTRHAETLVRILRHLASKEQRVTLKQLVEAWRVRKGAKAMPDHVMGDSRRPA-GLSRSTCERLVLRLLGLGVLSDDFHFTAFSVVHYIVTGARAHALESGSL-EVALEV 447
Q M TCRR MIAEALGE+GG +C G CDVCSGG A + D T HA TLVRILRHLA KEQRVT +QLV+AWR +KGAKAMPD V+G++ RP LSRS CERLVL+LLG GVLSDDFHFTAFSVVHY+VTGARAHALESG L +V+ +V
Sbjct: 175 QTMATCRRTMIAEALGERGGKGLCSGGXXXXXXCDVCSGGIDEAADVATLDATAHACTLVRILRHLALKEQRVTPRQLVDAWRAKKGAKAMPDEVVGENDRPPKALSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESGRLSQVSFQV 334
BLAST of mRNA_H-paniculata_contig18119.4386.1 vs. uniprot
Match: D7FHZ5_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ5_ECTSI) HSP 1 Score: 190 bits (482), Expect = 3.200e-53 Identity = 107/161 (66.46%), Postives = 122/161 (75.78%), Query Frame = 1
Query: 1 QAMRTCRRKMIAEALGEQGGDDVCRG-------TCDVCSGGAQAAVNT---DFTRHAETLVRILRHLASKEQRVTLKQLVEAWRVRKGAKAMPDHVMGDSRRPA-GLSRSTCERLVLRLLGLGVLSDDFHFTAFSVVHYIVTGARAHALESGSL-EVALEV 447
Q M TCRR MIAEALGE+GG +C CDVCSGG A + D T HA TLVRILRHLA KEQRVT +QLV+AWR +KGAKAMPD ++G++ RP LSRS CERLVL+LLG GVLSDDFHFTAFSVVHY+VTGARAHALESG L +V+ +V
Sbjct: 349 QTMATCRRTMIAEALGERGGKGLCSSGXXXXXXXCDVCSGGIGEAADVATLDATAHACTLVRILRHLALKEQRVTPRQLVDAWRAKKGAKAMPDEIVGENDRPPKSLSRSACERLVLQLLGDGVLSDDFHFTAFSVVHYVVTGARAHALESGRLSQVSFQV 509
BLAST of mRNA_H-paniculata_contig18119.4386.1 vs. uniprot
Match: C3ZXB5_BRAFL (ATP-dependent DNA helicase n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZXB5_BRAFL) HSP 1 Score: 90.9 bits (224), Expect = 1.230e-17 Identity = 53/148 (35.81%), Postives = 82/148 (55.41%), Query Frame = 1
Query: 16 CRRKMIAEALGEQGGDDVCRGTCDVCSGGAQAAVNT-DFTRHAETLVRILRHLASKEQRVTLKQLVEAWRVRKGAKAMPDHVMGDSRRPAGLSRSTCERLVLRLLGLGVLSDDFHFTAFSVVHYIVTGARAHALESGSLEVALEVPTK 456
CRR +IA+ E C G CDVC N D T + +VR+++ +KEQR+T +L ++W + KG K +H PA L+R ER++ +L G L +D+HFT +S + Y+V G ++H L SG ++V L +P+K
Sbjct: 511 CRRAIIADHFDEGWDSTKCSGMCDVCDPTLVTVTNEEDVTSLCQEVVRVIQSATAKEQRLTGLKLADSW-LGKGDKRRGNH-------PAWLTREMGERVITHMLLEGYLREDYHFTPYSTISYLVPGPKSHRLTSGGVQVTLCIPSK 650
BLAST of mRNA_H-paniculata_contig18119.4386.1 vs. uniprot
Match: C4A095_BRAFL (Uncharacterized protein (Fragment) n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C4A095_BRAFL) HSP 1 Score: 89.4 bits (220), Expect = 3.000e-17 Identity = 52/148 (35.14%), Postives = 82/148 (55.41%), Query Frame = 1
Query: 16 CRRKMIAEALGEQGGDDVCRGTCDVCSGGAQAAVNT-DFTRHAETLVRILRHLASKEQRVTLKQLVEAWRVRKGAKAMPDHVMGDSRRPAGLSRSTCERLVLRLLGLGVLSDDFHFTAFSVVHYIVTGARAHALESGSLEVALEVPTK 456
CRR +IA+ E C G CDVC + D T + +VR+++ +KEQR+T +L ++W + KG K +H PA L+R ER++ +L G L +D+HFT +S + Y+V G ++H L SG ++V L +P+K
Sbjct: 47 CRRAIIADHFDEGWDSTKCSGMCDVCDPTLVTVTDEEDVTSLCQEVVRVIQSATAKEQRLTGLKLADSW-LGKGDKRRGNH----GNHPAWLTREMGERVITHMLLEGYLREDYHFTPYSTISYLVPGPKSHRLTSGGVQVTLCIPSK 189
BLAST of mRNA_H-paniculata_contig18119.4386.1 vs. uniprot
Match: UPI0015FF2FAB (ATP-dependent DNA helicase Q1-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0015FF2FAB) HSP 1 Score: 89.4 bits (220), Expect = 4.240e-17 Identity = 52/148 (35.14%), Postives = 82/148 (55.41%), Query Frame = 1
Query: 16 CRRKMIAEALGEQGGDDVCRGTCDVCSGGAQAAVNT-DFTRHAETLVRILRHLASKEQRVTLKQLVEAWRVRKGAKAMPDHVMGDSRRPAGLSRSTCERLVLRLLGLGVLSDDFHFTAFSVVHYIVTGARAHALESGSLEVALEVPTK 456
CRR +IA+ E C G CDVC + D T + +VR+++ +KEQR+T +L ++W + KG K +H PA L+R ER++ +L G L +D+HFT +S + Y+V G ++H L SG ++V L +P+K
Sbjct: 473 CRRAIIADHFDEGWDSTKCSGMCDVCDPTLVTVTDEEDVTSLCQEVVRVIQSATAKEQRLTGLKLADSW-LGKGDKRRGNH----GNHPAWLTREMGERVITHMLLEGYLREDYHFTPYSTISYLVPGPKSHRLTSGGVQVTLCIPSK 615
BLAST of mRNA_H-paniculata_contig18119.4386.1 vs. uniprot
Match: UPI000D726A93 (ATP-dependent DNA helicase Q1-like n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D726A93) HSP 1 Score: 88.6 bits (218), Expect = 7.620e-17 Identity = 58/148 (39.19%), Postives = 83/148 (56.08%), Query Frame = 1
Query: 16 CRRKMIAEALGEQGGDDVCRGTCDVCSGGAQAAV-NTDFTRHAETLVRILRHLASKEQRVTLKQLVEAWRVRKGAKAMPDHVMGDSRRPAGLSRSTCERLVLRLLGLGVLSDDFHFTAFSVVHYIVTGARAHALESGSLEVALEVPTK 456
CRR IA GE + C CD C Q V D TR+ + +VRIL + AS QRVT +L++AW KG+ ++ + D + P G++R ER++ +L G L +DFHFTA+S + Y+V G +A AL G+ V +E TK
Sbjct: 454 CRRVRIARHFGELWDAEQCVAMCDHCDPKTQREVCRRDVTRYCKEVVRILENAASTNQRVTAVKLLDAW-YGKGSVSLR---VRDIKAP-GVTREKAERILAHMLLEGYLREDFHFTAYSTICYLVPGPKAKALTLGTAHVTMEFETK 596
BLAST of mRNA_H-paniculata_contig18119.4386.1 vs. uniprot
Match: A0A3M6TQQ1_POCDA (ATP-dependent DNA helicase n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TQQ1_POCDA) HSP 1 Score: 87.4 bits (215), Expect = 1.800e-16 Identity = 49/157 (31.21%), Postives = 80/157 (50.96%), Query Frame = 1
Query: 1 QAMRTCRRKMIAEALGEQGGDDVCRGTCDVC------SGGAQAAVNTDFTRHAETLVRILRHLASKEQRVTLKQLVEAWRVRKGAKAMPDHVMGDSRRPAGLSRSTCERLVLRLLGLGVLSDDFHFTAFSVVHYIVTGARAHALESGSLEVALEVPT 453
Q + CRR +I GE C CD C + G+ + D T H + +++IL+ S +RVT +LV+AW + A + LSR CER+++ LL GVL +DFHFT +S + Y++ G++A ++SG+ + + + T
Sbjct: 427 QEQKVCRRSLIGRHFGESWNPVDCHEMCDNCKKTGDQTDGSSSIEARDITNHCQDILKILQQAVSLSERVTPVKLVDAWNGKGQASLRVREIKAPD-----LSREDCERVIIHLLLEGVLREDFHFTPYSTISYVLPGSKARVVQSGTKRIFMNLRT 578
BLAST of mRNA_H-paniculata_contig18119.4386.1 vs. uniprot
Match: UPI0014589BDE (ATP-dependent DNA helicase Q1-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI0014589BDE) HSP 1 Score: 87.0 bits (214), Expect = 2.580e-16 Identity = 54/149 (36.24%), Postives = 82/149 (55.03%), Query Frame = 1
Query: 16 CRRKMIAEALGEQGGDDVCRGTCDVCSGGAQAAVNT-DFTRHAETLVRILRHLASKEQRVTLKQLVEAWRVRKGAKAMPDHVMGDSRRPAGLSRSTCERLVLRLLGLGVLSDDFHFTAFSVVHYIVTGARAHALESGSLEVALEVPTKE 459
CRR MIA GE C CD C + D T+ + ++ +L H A +QRVT +L++AW R GA ++ + D P +SR ER++ LL G + +DFHFTA+S + YIV G+++ L+SGS ++ +E P K+
Sbjct: 441 CRRSMIARHFGEVWERSQCNKMCDHCDDTYRVTPEKRDVTKLCQNVLTLLDHAAQTQQRVTATKLMDAWEGR-GATSLR---VRDVPEP-NISRDKLERILAHLLLNGYIKEDFHFTAYSTISYIVAGSKSRLLQSGSSKIGMEFPGKK 584
BLAST of mRNA_H-paniculata_contig18119.4386.1 vs. uniprot
Match: A0A2B4SSZ7_STYPI (ATP-dependent DNA helicase n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4SSZ7_STYPI) HSP 1 Score: 86.7 bits (213), Expect = 3.260e-16 Identity = 50/157 (31.85%), Postives = 80/157 (50.96%), Query Frame = 1
Query: 1 QAMRTCRRKMIAEALGEQGGDDVCRGTCDVC------SGGAQAAVNTDFTRHAETLVRILRHLASKEQRVTLKQLVEAWRVRKGAKAMPDHVMGDSRRPAGLSRSTCERLVLRLLGLGVLSDDFHFTAFSVVHYIVTGARAHALESGSLEVALEVPT 453
Q + CRR +I GE C CD C + G+ + D T H + +++IL+ S +RVT +LV+AW + A V LSR CER+++ LL GVL +DFHFT +S + Y++ G++A ++SG+ + + + T
Sbjct: 346 QEQKVCRRSLIGRHFGESWNPVDCHEMCDNCKKTGDQTDGSYSFEARDITNHCQDILKILQQAVSLSERVTPVKLVDAWNGKGQASLRVREVKSPD-----LSREDCERVIVHLLLEGVLREDFHFTPYSTISYVLPGSKARVVQSGAKRIFMNLRT 497
BLAST of mRNA_H-paniculata_contig18119.4386.1 vs. uniprot
Match: A0A6S7I8C1_PARCT (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7I8C1_PARCT) HSP 1 Score: 84.3 bits (207), Expect = 1.590e-15 Identity = 48/150 (32.00%), Postives = 87/150 (58.00%), Query Frame = 1
Query: 1 QAMRTCRRKMIAEALGEQGGDDVCRGTCDVCSGGAQ---AAVNTDFTRHAETLVRILRHLASKEQRVTLKQLVEAWRVRKGAKAMPDHVMGDSRRPAGLSRSTCERLVLRLLGLGVLSDDFHFTAFSVVHYIVTGARAHALESGSLEVAL 441
Q + +CRR +I + GE+ ++ C+G CD C V + T+ A+ +++IL++ +RVT+ +L+EAW KG K + + D P ++ C+R ++ L+ G+LS+DFHFT FS + Y+V G R + +++G + V++
Sbjct: 6 QDLHSCRRSLIGQHFGEEWKEEECKGMCDNCQRTDNDNCVPVKKNLTKEAQNVLKILQNAQEIAERVTMIKLLEAWNG-KGNKKLR---VKDLPAPT-ITSVDCQRFLIHLILDGILSEDFHFTPFSTISYLVPGLRTNNVQAGKISVSM 150 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18119.4386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18119.4386.1 >prot_H-paniculata_contig18119.4386.1 ID=prot_H-paniculata_contig18119.4386.1|Name=mRNA_H-paniculata_contig18119.4386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=205bp MRTCRRKMIAEALGEQGGDDVCRGTCDVCSGGAQAAVNTDFTRHAETLVRback to top mRNA from alignment at H-paniculata_contig18119:3651..4664- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18119.4386.1 ID=mRNA_H-paniculata_contig18119.4386.1|Name=mRNA_H-paniculata_contig18119.4386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1014bp|location=Sequence derived from alignment at H-paniculata_contig18119:3651..4664- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18119:3651..4664- >mRNA_H-paniculata_contig18119.4386.1 ID=mRNA_H-paniculata_contig18119.4386.1|Name=mRNA_H-paniculata_contig18119.4386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1230bp|location=Sequence derived from alignment at H-paniculata_contig18119:3651..4664- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |