prot_H-paniculata_contig18115.4385.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig18115.4385.1
Unique Nameprot_H-paniculata_contig18115.4385.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length65
Homology
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BLAST of mRNA_H-paniculata_contig18115.4385.1 vs. uniprot
Match: D8LC23_ECTSI (Glyco_transf_41 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC23_ECTSI)

HSP 1 Score: 48.5 bits (114), Expect = 6.780e-5
Identity = 25/57 (43.86%), Postives = 37/57 (64.91%), Query Frame = 0 
Query:    5 DLDGAIAQFRLAVDLKPDLSSAWAKLAIVLEKLNRRDEAIAAYQARVVKYLAGAPNA 61
            ++D AI+Q+R+A+++  DL+SAW  L + L  L+R DEAI AY     K +   PNA
Sbjct:   39 EIDAAISQYRVAINMTNDLASAWLNLGLALAMLDREDEAIDAY-----KVVIKLPNA 90
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18115.4385.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LC23_ECTSI6.780e-543.86Glyco_transf_41 domain-containing protein n=1 Tax=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 25..48
e-value: 0.0085
score: 16.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..64
e-value: 7.2E-11
score: 43.9
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 4..49
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 1..48
score: 9.833

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18115contigH-paniculata_contig18115:285..479 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18115.4385.1mRNA_H-paniculata_contig18115.4385.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig18115 285..479 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig18115.4385.1 ID=prot_H-paniculata_contig18115.4385.1|Name=mRNA_H-paniculata_contig18115.4385.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
QAGDDLDGAIAQFRLAVDLKPDLSSAWAKLAIVLEKLNRRDEAIAAYQAR
VVKYLAGAPNAKQN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom