mRNA_H-paniculata_contig18115.4385.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18115.4385.1
Unique NamemRNA_H-paniculata_contig18115.4385.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18115.4385.1 vs. uniprot
Match: D8LC23_ECTSI (Glyco_transf_41 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC23_ECTSI)

HSP 1 Score: 48.5 bits (114), Expect = 6.780e-5
Identity = 25/57 (43.86%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:   13 DLDGAIAQFRLAVDLKPDLSSAWAKLAIVLEKLNRRDEAIAAYQARVVKYLAGAPNA 183
            ++D AI+Q+R+A+++  DL+SAW  L + L  L+R DEAI AY     K +   PNA
Sbjct:   39 EIDAAISQYRVAINMTNDLASAWLNLGLALAMLDREDEAIDAY-----KVVIKLPNA 90
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18115.4385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LC23_ECTSI6.780e-543.86Glyco_transf_41 domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18115contigH-paniculata_contig18115:285..479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929409.904754-CDS-H-paniculata_contig18115:284..4791622929409.904754-CDS-H-paniculata_contig18115:284..479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18115 285..479 +
1691480849.1943617-CDS-H-paniculata_contig18115:284..4791691480849.1943617-CDS-H-paniculata_contig18115:284..479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18115 285..479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18115.4385.1prot_H-paniculata_contig18115.4385.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18115 285..479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18115.4385.1

>prot_H-paniculata_contig18115.4385.1 ID=prot_H-paniculata_contig18115.4385.1|Name=mRNA_H-paniculata_contig18115.4385.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
QAGDDLDGAIAQFRLAVDLKPDLSSAWAKLAIVLEKLNRRDEAIAAYQAR
VVKYLAGAPNAKQN*
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mRNA from alignment at H-paniculata_contig18115:285..479+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18115.4385.1 ID=mRNA_H-paniculata_contig18115.4385.1|Name=mRNA_H-paniculata_contig18115.4385.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig18115:285..479+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCAGGCGATGACCTGGACGGCGCCATTGCCCAGTTCCGGCTAGCGGT
AGACCTCAAGCCTGACCTATCATCGGCATGGGCGAAACTTGCGATTGTTC
TGGAGAAGCTTAATCGTCGAGACGAAGCCATCGCCGCCTATCAGGCACGT
GTCGTAAAATACTTAGCTGGTGCACCGAATGCGAAGCAAAATTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig18115:285..479+

>mRNA_H-paniculata_contig18115.4385.1 ID=mRNA_H-paniculata_contig18115.4385.1|Name=mRNA_H-paniculata_contig18115.4385.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig18115:285..479+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCAGGCGATGACCTGGACGGCGCCATTGCCCAGTTCCGGCTAGCGGT
AGACCTCAAGCCTGACCTATCATCGGCATGGGCGAAACTTGCGATTGTTC
TGGAGAAGCTTAATCGTCGAGACGAAGCCATCGCCGCCTATCAGGCACGT
GTCGTAAAATACTTAGCTGGTGCACCGAATGCGAAGCAAAATTAGCAGGC
AGGCGATGACCTGGACGGCGCCATTGCCCAGTTCCGGCTAGCGGTAGACC
TCAAGCCTGACCTATCATCGGCATGGGCGAAACTTGCGATTGTTCTGGAG
AAGCTTAATCGTCGAGACGAAGCCATCGCCGCCTATCAGGCACGTGTCGT
AAAATACTTAGCTGGTGCACCGAATGCGAAGCAAAATTAG
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