mRNA_H-paniculata_contig18113.4383.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18113.4383.1
Unique NamemRNA_H-paniculata_contig18113.4383.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18113.4383.1 vs. uniprot
Match: D8LER3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER3_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 4.280e-28
Identity = 59/87 (67.82%), Postives = 63/87 (72.41%), Query Frame = 1
Query:    1 MFDPGVAEALTASTTD---------VSAWSVTSLTSDLAADLFQASLVPYLAFLWCLKRPETKTPEGGFFGFAFLLVFVAATIPAGI 234
            M DPG A A  ++            VSAWSVTS+TSD AA+LFQASL PYLAFLW L R ETKTPEGG FGFAFLLVFV ATIPAGI
Sbjct:    1 MLDPGTAVAALSTAVAAGGGGADGAVSAWSVTSITSDFAAELFQASLFPYLAFLWLLSRKETKTPEGGTFGFAFLLVFVVATIPAGI 87          
BLAST of mRNA_H-paniculata_contig18113.4383.1 vs. uniprot
Match: A0A6H5KGT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGT7_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.190e-25
Identity = 53/62 (85.48%), Postives = 56/62 (90.32%), Query Frame = 1
Query:   49 VSAWSVTSLTSDLAADLFQASLVPYLAFLWCLKRPETKTPEGGFFGFAFLLVFVAATIPAGI 234
            VSAWSVTS+TSD AA+LFQASL+PYLAFLW L R ETKTPEGG FGFAFLLVFV ATIPAGI
Sbjct:  134 VSAWSVTSITSDFAAELFQASLLPYLAFLWLLSRKETKTPEGGTFGFAFLLVFVVATIPAGI 195          
BLAST of mRNA_H-paniculata_contig18113.4383.1 vs. uniprot
Match: A0A835YND2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YND2_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.250e-25
Identity = 52/76 (68.42%), Postives = 58/76 (76.32%), Query Frame = 1
Query:    7 DPGVAEALTASTTDVSAWSVTSLTSDLAADLFQASLVPYLAFLWCLKRPETKTPEGGFFGFAFLLVFVAATIPAGI 234
            DP   E    S   VSAWSVT++T+DL A LFQASL PYLAFL+ L +PETKTP+GG F F FLLVFVAATIPAGI
Sbjct:   61 DPSTVELAAQSVQGVSAWSVTTVTADLGAQLFQASLAPYLAFLYFLSKPETKTPKGGTFSFTFLLVFVAATIPAGI 136          
BLAST of mRNA_H-paniculata_contig18113.4383.1 vs. uniprot
Match: A0A1X6NWM6_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NWM6_PORUM)

HSP 1 Score: 77.4 bits (189), Expect = 3.210e-15
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 1
Query:   58 WSVTSLTSD-LAADLFQASLVPYLAFLWCLKRPETKTPEGGFFGFAFLLVFVAATIPAGI 234
            WS+++  +D LAA LF ASL PYLAFL+ L RPET  P+G + GFAFLLVFV ATIPAGI
Sbjct:  117 WSISAAAADALAAQLFAASLFPYLAFLYFLSRPETGCPKGAYRGFAFLLVFVFATIPAGI 176          
BLAST of mRNA_H-paniculata_contig18113.4383.1 vs. uniprot
Match: A0A7S4FPV4_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FPV4_9EUGL)

HSP 1 Score: 75.9 bits (185), Expect = 2.560e-14
Identity = 41/59 (69.49%), Postives = 45/59 (76.27%), Query Frame = 1
Query:   58 WSVTSLTSDLAADLFQASLVPYLAFLWCLKRPETKTPEGGFFGFAFLLVFVAATIPAGI 234
            WSV    +D+A  LFQASLVPYLAFL+ L RP TK P G + GFAFLLVFV ATIPAGI
Sbjct:  125 WSVQ--VNDIAPTLFQASLVPYLAFLFFLGRPSTKLPAGAWRGFAFLLVFVFATIPAGI 181          
BLAST of mRNA_H-paniculata_contig18113.4383.1 vs. uniprot
Match: A0A0G4G622_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G622_9ALVE)

HSP 1 Score: 75.5 bits (184), Expect = 3.570e-14
Identity = 44/72 (61.11%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   19 AEALTASTTDVSAWSVTSLTSDLAADLFQASLVPYLAFLWCLKRPETKTPEGGFFGFAFLLVFVAATIPAGI 234
            A AL A  T V  WSV +    L + LF +SL PYLAFLW L RPETKTP    FGF FLLVFV +TIPAGI
Sbjct:   62 AAALGALPTPVDPWSVDN--EALTSRLFSSSLAPYLAFLWFLGRPETKTPPLALFGFRFLLVFVFSTIPAGI 131          
BLAST of mRNA_H-paniculata_contig18113.4383.1 vs. uniprot
Match: A0A0G4H1D7_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H1D7_9ALVE)

HSP 1 Score: 70.9 bits (172), Expect = 1.520e-12
Identity = 41/59 (69.49%), Postives = 43/59 (72.88%), Query Frame = 1
Query:   58 WSVTSLTSDLAADLFQASLVPYLAFLWCLKRPETKTPEGGFFGFAFLLVFVAATIPAGI 234
            WSV S T  LA  LF ASL PYLAFL+ L R ETKTP+   FGF FLLVFV ATIPAGI
Sbjct:   77 WSVNSET--LATQLFAASLPPYLAFLYFLGREETKTPKLPLFGFWFLLVFVFATIPAGI 133          
BLAST of mRNA_H-paniculata_contig18113.4383.1 vs. uniprot
Match: A0A7S0QUT8_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QUT8_9CHLO)

HSP 1 Score: 68.9 bits (167), Expect = 7.220e-12
Identity = 37/60 (61.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:   55 AWSVTSLTSDLAADLFQASLVPYLAFLWCLKRPETKTPEGGFFGFAFLLVFVAATIPAGI 234
            AWSVT   + +A  LFQASL+PYL FL+ + RPE KTP     GF FLL FVAATIPAG+
Sbjct:   88 AWSVTG--AAIAPTLFQASLLPYLGFLYFVGRPEAKTPPLANVGFRFLLCFVAATIPAGV 145          
BLAST of mRNA_H-paniculata_contig18113.4383.1 vs. uniprot
Match: A0A835XU58_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XU58_9CHLO)

HSP 1 Score: 67.4 bits (163), Expect = 2.560e-11
Identity = 35/52 (67.31%), Postives = 36/52 (69.23%), Query Frame = 1
Query:   79 SDLAADLFQASLVPYLAFLWCLKRPETKTPEGGFFGFAFLLVFVAATIPAGI 234
            S LA  LF  SL PYL FL+ L RPETK P    FGF FLLVFV ATIPAGI
Sbjct:   45 SSLAPQLFAFSLFPYLGFLYHLSRPETKAPRVTLFGFYFLLVFVGATIPAGI 96          
BLAST of mRNA_H-paniculata_contig18113.4383.1 vs. uniprot
Match: K8F0D0_9CHLO (Uncharacterized protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8F0D0_9CHLO)

HSP 1 Score: 65.9 bits (159), Expect = 8.780e-11
Identity = 37/63 (58.73%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   49 VSAWSVTSLT-SDLAADLFQASLVPYLAFLWCLKRPETKTPEGGFFGFAFLLVFVAATIPAGI 234
            V  W VT    + L A+LF ASL PYL FL+ L +PET  P+   FGF FLLVFV ATIPAGI
Sbjct:  108 VDPWGVTDAEYTTLEANLFAASLFPYLFFLFFLGKPETAFPKRALFGFKFLLVFVFATIPAGI 170          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18113.4383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LER3_ECTSI4.280e-2867.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGT7_9PHAE1.190e-2585.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YND2_9STRA2.250e-2568.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1X6NWM6_PORUM3.210e-1566.67Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S4FPV4_9EUGL2.560e-1469.49Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A0G4G622_9ALVE3.570e-1461.11Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A0G4H1D7_9ALVE1.520e-1269.49Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S0QUT8_9CHLO7.220e-1261.67Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A835XU58_9CHLO2.560e-1167.31Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
K8F0D0_9CHLO8.780e-1158.73Uncharacterized protein n=1 Tax=Bathycoccus prasin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18113contigH-paniculata_contig18113:4703..4936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue1.7e-21
Seed eggNOG ortholog2880.D8LER3
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004103,GO:0004305,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006629,GO:0006644,GO:0006646,GO:0006650,GO:0006656,GO:0006657,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0045017,GO:0046337,GO:0046470,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:0097164,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.positive regulation of TORC1 signaling
EggNOG OGsKOG2445@1,KOG2445@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size234
Cds size234
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929409.8001983-CDS-H-paniculata_contig18113:4702..49361622929409.8001983-CDS-H-paniculata_contig18113:4702..4936Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18113 4703..4936 +
1691480849.1639662-CDS-H-paniculata_contig18113:4702..49361691480849.1639662-CDS-H-paniculata_contig18113:4702..4936Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18113 4703..4936 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18113.4383.1prot_H-paniculata_contig18113.4383.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18113 4703..4936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18113.4383.1

>prot_H-paniculata_contig18113.4383.1 ID=prot_H-paniculata_contig18113.4383.1|Name=mRNA_H-paniculata_contig18113.4383.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
MFDPGVAEALTASTTDVSAWSVTSLTSDLAADLFQASLVPYLAFLWCLKR
PETKTPEGGFFGFAFLLVFVAATIPAGI
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mRNA from alignment at H-paniculata_contig18113:4703..4936+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18113.4383.1 ID=mRNA_H-paniculata_contig18113.4383.1|Name=mRNA_H-paniculata_contig18113.4383.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=234bp|location=Sequence derived from alignment at H-paniculata_contig18113:4703..4936+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCGACCCCGGAGTTGCCGAAGCATTGACGGCATCGACTACGGACGT TTCCGCCTGGTCGGTGACTTCGCTGACCAGCGATCTGGCGGCGGATTTGT TCCAGGCGTCGCTGGTTCCGTACTTGGCGTTTCTGTGGTGTTTGAAACGG CCCGAGACCAAGACGCCCGAGGGAGGCTTCTTCGGCTTCGCGTTCTTATT GGTATTCGTTGCAGCTACCATCCCTGCCGGGATT
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Coding sequence (CDS) from alignment at H-paniculata_contig18113:4703..4936+

>mRNA_H-paniculata_contig18113.4383.1 ID=mRNA_H-paniculata_contig18113.4383.1|Name=mRNA_H-paniculata_contig18113.4383.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig18113:4703..4936+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCGACCCCGGAGTTGCCGAAGCATTGACGGCATCGACTACGGACGT
TTCCGCCTGGTCGGTGACTTCGCTGACCAGCGATCTGGCGGCGGATTTGT
TCCAGGCGTCGCTGGTTCCGTACTTGGCGTTTCTGTGGTGTTTGAAACGG
CCCGAGACCAAGACGCCCGAGGGAGGCTTCTTCGGCTTCGCGTTCTTATT
GGTATTCGTTGCAGCTACCATCCCTGCCGGGATTATGTTCGACCCCGGAG
TTGCCGAAGCATTGACGGCATCGACTACGGACGTTTCCGCCTGGTCGGTG
ACTTCGCTGACCAGCGATCTGGCGGCGGATTTGTTCCAGGCGTCGCTGGT
TCCGTACTTGGCGTTTCTGTGGTGTTTGAAACGGCCCGAGACCAAGACGC
CCGAGGGAGGCTTCTTCGGCTTCGCGTTCTTATTGGTATTCGTTGCAGCT
ACCATCCCTGCCGGGATT
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