mRNA_H-paniculata_contig181.4379.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig181.4379.1
Unique NamemRNA_H-paniculata_contig181.4379.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig181.4379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig181contigH-paniculata_contig181:46162..46465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size304
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929408.7217085-CDS-H-paniculata_contig181:46161..464611622929408.7217085-CDS-H-paniculata_contig181:46161..46461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig181 46162..46461 +
1691480848.654513-CDS-H-paniculata_contig181:46161..464611691480848.654513-CDS-H-paniculata_contig181:46161..46461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig181 46162..46461 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929408.7323442-UTR-H-paniculata_contig181:46461..464651622929408.7323442-UTR-H-paniculata_contig181:46461..46465Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig181 46462..46465 +
1691480848.6653883-UTR-H-paniculata_contig181:46461..464651691480848.6653883-UTR-H-paniculata_contig181:46461..46465Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig181 46462..46465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig181.4379.1prot_H-paniculata_contig181.4379.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig181 46162..46461 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig181.4379.1

>prot_H-paniculata_contig181.4379.1 ID=prot_H-paniculata_contig181.4379.1|Name=mRNA_H-paniculata_contig181.4379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
PQLATGRDSRGNYFAFDVAYNGTRSCFPLSAFPRTSTIAFSLKSSRTVFR
ISCCRRHVVRWCPLPPPPLSLPRHSCSCLRRQWRTSPSTSARRDSNRTR*
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mRNA from alignment at H-paniculata_contig181:46162..46465+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig181.4379.1 ID=mRNA_H-paniculata_contig181.4379.1|Name=mRNA_H-paniculata_contig181.4379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=304bp|location=Sequence derived from alignment at H-paniculata_contig181:46162..46465+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCAATTGGCGACCGGCCGCGATAGTCGTGGAAATTACTTCGCCTTCGA
TGTAGCCTACAATGGAACACGATCCTGTTTCCCCCTTTCCGCTTTTCCCC
GCACATCAACGATAGCCTTTTCTCTCAAGTCAAGTCGAACTGTGTTTAGA
ATTTCTTGTTGTAGACGCCACGTTGTTCGCTGGTGCCCCTTACCCCCACC
CCCCCTATCCCTGCCCCGGCATTCCTGTTCTTGTCTCCGCAGGCAGTGGA
GGACCTCGCCGAGTACCTCCGCGCGTCGGGATTCTAACCGCACGCGTTGA
AGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig181:46162..46465+

>mRNA_H-paniculata_contig181.4379.1 ID=mRNA_H-paniculata_contig181.4379.1|Name=mRNA_H-paniculata_contig181.4379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig181:46162..46465+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCAATTGGCGACCGGCCGCGATAGTCGTGGAAATTACTTCGCCTTCGA
TGTAGCCTACAATGGAACACGATCCTGTTTCCCCCTTTCCGCTTTTCCCC
GCACATCAACGATAGCCTTTTCTCTCAAGTCAAGTCGAACTGTGTTTAGA
ATTTCTTGTTGTAGACGCCACGTTGTTCGCTGGTGCCCCTTACCCCCACC
CCCCCTATCCCTGCCCCGGCATTCCTGTTCTTGTCTCCGCAGGCAGTGGA
GGACCTCGCCGAGTACCTCCGCGCGTCGGGATTCTAACCGCACGCGTTGA
CCGCAATTGGCGACCGGCCGCGATAGTCGTGGAAATTACTTCGCCTTCGA
TGTAGCCTACAATGGAACACGATCCTGTTTCCCCCTTTCCGCTTTTCCCC
GCACATCAACGATAGCCTTTTCTCTCAAGTCAAGTCGAACTGTGTTTAGA
ATTTCTTGTTGTAGACGCCACGTTGTTCGCTGGTGCCCCTTACCCCCACC
CCCCCTATCCCTGCCCCGGCATTCCTGTTCTTGTCTCCGCAGGCAGTGGA
GGACCTCGCCGAGTACCTCCGCGCGTCGGGATTCTAACCGCACGCGTTGA
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