mRNA_H-paniculata_contig18098.4375.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18098.4375.1
Unique NamemRNA_H-paniculata_contig18098.4375.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18098.4375.1 vs. uniprot
Match: D8LJR2_ECTSI (Coatomer protein complex, gamma sub-unit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR2_ECTSI)

HSP 1 Score: 381 bits (979), Expect = 1.090e-129
Identity = 191/209 (91.39%), Postives = 195/209 (93.30%), Query Frame = 1
Query:   25 GNPELRLALNEDLVVGKANGTPSFGSVVLDDCNFHECAKLDEFESMRQLSFTPPDGEFALLNYRINAEFRCPFRLFPSIGDIDPYRMEVVVIVRGDMPETAAGTNVVVRVPXXXXXVSVNTEVESRVPGQTAEYSATEHRVVWTIKKFQGSSELTLRAKVTLPTVVNTAARKEVGPVSMQFEIPMYNVSNLQVRYLKIAEFAKSYNPFR 651
            GNPELRLALNEDLVVGKAN   SFGSVVLDDCNFHECAKLDEFESMRQLSFTPPDGEF LLNYR+NAEFRCPFRLFPSIGDIDPYRMEVVVIVR DMPETAAGTNVVVR+P     VSV++EVESRVPGQTAEYSA EHRVVWTIKKFQGSSELTLRAKVTLP VVN A RKEVGPVSMQFEIPMYNVSNLQVRYLKIAEFAKSYNPFR
Sbjct:  219 GNPELRLALNEDLVVGKANAGSSFGSVVLDDCNFHECAKLDEFESMRQLSFTPPDGEFVLLNYRMNAEFRCPFRLFPSIGDIDPYRMEVVVIVRADMPETAAGTNVVVRLPMPRNAVSVSSEVESRVPGQTAEYSANEHRVVWTIKKFQGSSELTLRAKVTLPNVVNAANRKEVGPVSMQFEIPMYNVSNLQVRYLKIAEFAKSYNPFR 427          
BLAST of mRNA_H-paniculata_contig18098.4375.1 vs. uniprot
Match: A0A7S3MCI4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCI4_9STRA)

HSP 1 Score: 266 bits (681), Expect = 1.330e-87
Identity = 128/209 (61.24%), Postives = 164/209 (78.47%), Query Frame = 1
Query:   25 GNPELRLALNEDLVVGKANGTPSFGSVVLDDCNFHECAKLDEFESMRQLSFTPPDGEFALLNYRINAEFRCPFRLFPSIGDIDPYRMEVVVIVRGDMPETAAGTNVVVRVPXXXXXVSVNTEVESRVPGQTAEYSATEHRVVWTIKKFQGSSELTLRAKVTLPTVVNTAARKEVGPVSMQFEIPMYNVSNLQVRYLKIAEFAKSYNPFR 651
            GNPELRLALNEDLV+GK NG  S+GSVVLDDCNFHEC  LDEFES R L F PPDGEFA+LNYRI A++R PF+L+P+I +   Y+++V++++R D+PE   G+NV +R+P     VSV  E    +PG +AEY+A E +V++ I+KF GSSE++LRA++TL T V  A +KE+GP+SM FEIPMYNVSNLQVRYL+I+E  KSYNP R
Sbjct:    1 GNPELRLALNEDLVIGKGNG--SYGSVVLDDCNFHECVHLDEFESSRTLHFLPPDGEFAVLNYRITADYRAPFKLYPTIEESGTYKVDVIIVLRADIPEANYGSNVTLRLPVPRNTVSVLPEFSIEMPGCSAEYNANEKKVLFNIRKFNGSSEISLRARITLDTPVTAAHKKEIGPISMSFEIPMYNVSNLQVRYLRISETHKSYNPCR 207          
BLAST of mRNA_H-paniculata_contig18098.4375.1 vs. uniprot
Match: A0A7S2CZI0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CZI0_9STRA)

HSP 1 Score: 258 bits (660), Expect = 1.140e-83
Identity = 120/209 (57.42%), Postives = 152/209 (72.73%), Query Frame = 1
Query:   25 GNPELRLALNEDLVVGKANGTPSFGSVVLDDCNFHECAKLDEFESMRQLSFTPPDGEFALLNYRINAEFRCPFRLFPSIGDIDPYRMEVVVIVRGDMPETAAGTNVVVRVPXXXXXVSVNTEVESRVPGQTAEYSATEHRVVWTIKKFQGSSELTLRAKVTLPTVVNTAARKEVGPVSMQFEIPMYNVSNLQVRYLKIAEFAKSYNPFR 651
            GNPELRLALNEDLV+GK     ++GSV LDDCNFHEC +L +FE+ R LSF PPDGEF +LNYR+  EFR PFR+FP+I ++ PY+++V +  R D+PET  G NVV+R+P      S   E+     GQ AE+S T   V WTIKKFQG++E T+R K+TL     T  RKE+GP+S+ FE+PMYNVSNL VRYL+IAE  K+YNP+R
Sbjct:   62 GNPELRLALNEDLVIGKGG---AYGSVTLDDCNFHECVQLQDFETSRTLSFIPPDGEFVVLNYRVTGEFRAPFRVFPAIDEVSPYKLDVTIRCRADIPETNYGANVVIRIPVPRNTASAGCELAQNAVGQQAEFSNTAKHVTWTIKKFQGNTEQTIRVKITLSDPATTNTRKEIGPISLNFEVPMYNVSNLAVRYLRIAEQGKAYNPYR 267          
BLAST of mRNA_H-paniculata_contig18098.4375.1 vs. uniprot
Match: A0A835YW81_9STRA (Coatomer protein complex, gamma sub-unit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW81_9STRA)

HSP 1 Score: 257 bits (656), Expect = 7.300e-81
Identity = 123/210 (58.57%), Postives = 160/210 (76.19%), Query Frame = 1
Query:   25 GNPELRLALNEDLVVGKANGTPSFGSVVLDDCNFHECAKLDEFESMRQLSFTPPDGEFALLNYRINAEFRCPFRLFPSIGDIDPYRMEVVVIVRGDMPETAAGTNVVVRVPXXXXXVSVNTEVESR-VPGQTAEYSATEHRVVWTIKKFQGSSELTLRAKVTLPTVVNTAARKEVGPVSMQFEIPMYNVSNLQVRYLKIAEFAKSYNPFR 651
            GNPEL+LALNEDLV+G+   T ++G+VVLDDCNFHEC +LD+FES RQL+  PPDGEF  LNYRI AEFR PFR+FPS+ + D   +E++++VR DMPE   G+NVVV VP      +V+ E++ R +PGQ+AEY+AT  RV WTIK+FQG +E +LR +VTL        R+E+GP+S  FE+PMY+VS LQVRYLKIA+  K+YNP+R
Sbjct:  218 GNPELKLALNEDLVIGRGQ-TSTYGAVVLDDCNFHECVRLDDFESGRQLTLVPPDGEFVALNYRITAEFRAPFRMFPSVTETDALHLELLLLVRADMPEAQYGSNVVVSVPVPRAAGTVSAEIDPRALPGQSAEYNATAKRVDWTIKRFQGGTEQSLRVRVTLTQPCTATTRRELGPISASFEVPMYSVSGLQVRYLKIADAGKAYNPYR 426          
BLAST of mRNA_H-paniculata_contig18098.4375.1 vs. uniprot
Match: A0A7S2UX12_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UX12_9STRA)

HSP 1 Score: 257 bits (657), Expect = 9.690e-81
Identity = 123/209 (58.85%), Postives = 155/209 (74.16%), Query Frame = 1
Query:   25 GNPELRLALNEDLVVGKANGTPSFGSVVLDDCNFHECAKLDEFESMRQLSFTPPDGEFALLNYRINAEFRCPFRLFPSIGDIDPYRMEVVVIVRGDMPETAAGTNVVVRVPXXXXXVSVNTEVESRVPGQTAEYSATEHRVVWTIKKFQGSSELTLRAKVTLPTVVNTAARKEVGPVSMQFEIPMYNVSNLQVRYLKIAEFAKSYNPFR 651
            GNPELRLALN+DLV+GK  G   +GSVVLDDCNFHE  +LD FE  R LS  PPDGEF +LNYR+ +EFR PFRLFP+I ++ PY++E+V++VR D+PE+  G NV V +P      S   E+   V GQ+ EY   E ++VWTIKKF G +E  LRAK+TL +    AAR+E+GP+SM FEIPMYNVS+LQVRYL+IAE  K+YNP+R
Sbjct:  244 GNPELRLALNDDLVIGKGGG--QYGSVVLDDCNFHEAVRLDSFEMSRTLSLVPPDGEFVVLNYRVTSEFRTPFRLFPAIEEVSPYKLELVLMVRADIPESNYGANVTVTIPVPRTAASATGEMGENVVGQSCEYDQGERKLVWTIKKFPGGTEQGLRAKITLASATAPAARREIGPISMGFEIPMYNVSHLQVRYLRIAEADKTYNPYR 450          
BLAST of mRNA_H-paniculata_contig18098.4375.1 vs. uniprot
Match: A0A812WLM7_SYMMI (AP4M protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WLM7_SYMMI)

HSP 1 Score: 251 bits (642), Expect = 8.090e-79
Identity = 117/209 (55.98%), Postives = 157/209 (75.12%), Query Frame = 1
Query:   25 GNPELRLALNEDLVVGKANGTPSFGSVVLDDCNFHECAKLDEFESMRQLSFTPPDGEFALLNYRINAEFRCPFRLFPSIGDIDPYRMEVVVIVRGDMPETAAGTNVVVRVPXXXXXVSVNTEVESRVPGQTAEYSATEHRVVWTIKKFQGSSELTLRAKVTLPTVVNTAARKEVGPVSMQFEIPMYNVSNLQVRYLKIAEFAKSYNPFR 651
            GNPELRLALNEDLV+GK +   ++GSVV+DDCNFHEC +LDEFE+ R L F PPDGEF +LNYRI  +FR PFRLFPSI +  PY+++V+ +VR ++PE   G  VV+ +P      SV+ E+   +PG +AE+ ++  +V WTI+K  G+SEL +R K+TL      A ++E+GP++MQFEIPMYNVSNLQV+YL+I+E  KSYNP+R
Sbjct:  217 GNPELRLALNEDLVIGKGS---TYGSVVMDDCNFHECVRLDEFEASRTLHFVPPDGEFTVLNYRITGDFRSPFRLFPSIEETGPYKLDVLCLVRAEIPEGNHGAGVVINIPVPRATASVSFEMSVNMPGSSAEFISSSKKVQWTIRKMVGASELAIRCKLTLDQPATAAHKREIGPIAMQFEIPMYNVSNLQVKYLRISETHKSYNPYR 422          
BLAST of mRNA_H-paniculata_contig18098.4375.1 vs. uniprot
Match: A0A6A7GCG2_9CRUS (AP-4 complex subunit mu-1 n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GCG2_9CRUS)

HSP 1 Score: 248 bits (634), Expect = 1.650e-77
Identity = 118/211 (55.92%), Postives = 155/211 (73.46%), Query Frame = 1
Query:   25 GNPELRLALNEDLVVGKAN--GTPSFGSVVLDDCNFHECAKLDEFESMRQLSFTPPDGEFALLNYRINAEFRCPFRLFPSIGDIDPYRMEVVVIVRGDMPETAAGTNVVVRVPXXXXXVSVNTEVESRVPGQTAEYSATEHRVVWTIKKFQGSSELTLRAKVTLPTVVNTAARKEVGPVSMQFEIPMYNVSNLQVRYLKIAEFAKSYNPFR 651
            GNPELRLALNEDLV+GK+N  G+  +G+VVLDDCNFHEC +L+EF++ R LSF PPDGEF++LNYR+  EFR PFR+FP    + PY++E+++ +R D+PE   G NV+V+ P      SV+ ++     GQ +EYSA + +V W IKKF G +E TLR K+TL +   T  RKE+GP+SM FEIPM+N S LQVRYL+I E  KSYNP+R
Sbjct:  221 GNPELRLALNEDLVIGKSNVTGSGGYGNVVLDDCNFHECVRLEEFDATRTLSFQPPDGEFSVLNYRVTGEFRAPFRIFPFFELVTPYKIELIIKIRADVPEQNYGGNVLVQFPVPKATTSVSCDLGLGTIGQASEYSAVDKKVFWKIKKFGGGTEQTLRVKITLGSQHTTIVRKEIGPISMTFEIPMFNASGLQVRYLRIMESRKSYNPYR 431          
BLAST of mRNA_H-paniculata_contig18098.4375.1 vs. uniprot
Match: A0A7S2N1G3_9DINO (Hypothetical protein n=2 Tax=Alexandrium TaxID=2924 RepID=A0A7S2N1G3_9DINO)

HSP 1 Score: 247 bits (631), Expect = 3.950e-77
Identity = 123/213 (57.75%), Postives = 156/213 (73.24%), Query Frame = 1
Query:   25 GNPELRLALNEDLVVGKAN--GTPSFGSVVLDDCNFHECAKLDEFESMRQLSFTPPDGEFALLNYRINAEFRCPFRLFPSIGDIDPYRMEVVVIVRGDMPETAAGTNVVVRVPXXXXXVSVNTEVESRVPGQTAEYSATEHRVVWTIKKFQGSSELTLRAKVTLPTVV--NTAARKEVGPVSMQFEIPMYNVSNLQVRYLKIAEFAKSYNPFR 651
            GNPEL+LALNED+ +   N  G   +G+VVLDDCNFHEC  L++F   R LS  PPDGEFA++NYRI  +FR PFR+FP +    P+++EV + VR D+PE   G NV +         SV+TE+ S++ GQTAEY ATEHR+VW IKKFQG+SE +++A+VTL + V  N+  +KEVGPVS+ FEIPMYNVSNLQVRYL+IAE  KSYNP R
Sbjct:  213 GNPELKLALNEDITIKNQNIGGHGGYGAVVLDDCNFHECVDLEDFADQRTLSLYPPDGEFAVMNYRITGDFRVPFRIFPFVEQQTPHKLEVTIKVRADIPEQNYGGNVQISCAMPKSAASVSTELGSQITGQTAEYLATEHRLVWNIKKFQGASECSIKARVTLSSPVGSNSNVKKEVGPVSLSFEIPMYNVSNLQVRYLRIAERHKSYNPCR 425          
BLAST of mRNA_H-paniculata_contig18098.4375.1 vs. uniprot
Match: A0A7S2SFF0_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SFF0_9STRA)

HSP 1 Score: 245 bits (625), Expect = 3.410e-76
Identity = 120/211 (56.87%), Postives = 158/211 (74.88%), Query Frame = 1
Query:   25 GNPELRLALNEDLVVGKANGTPSFGSVVLDDCNFHECAKLDEFESMRQLSFTPPDGEFALLNYRINAEFRCPFRLFPSIGDIDPYRMEVVVIVRGDMPETAAGTNVVVRVPXXXXXVSVNTEVESRVP--GQTAEYSATEHRVVWTIKKFQGSSELTLRAKVTLPTVVNTAARKEVGPVSMQFEIPMYNVSNLQVRYLKIAEFAKSYNPFR 651
            GNP LRLALNEDLVVGK +G+ ++GSVVLDDCNFHEC +LDEFE+MR L+F PPDGEF ++NYRI+ EF  PFR++P I +  P ++EV+V +R D+P    G N+ V +P       V+  V+S V   GQ+AEY   E++VVW+IKKFQG SE T+RAK+ L   ++ A R+E+GPVS+ FEIPM+NVSNLQV+YL+I E  ++YNP R
Sbjct:  219 GNPPLRLALNEDLVVGKGDGS-NYGSVVLDDCNFHECVRLDEFETMRTLNFVPPDGEFVVMNYRISNEFVAPFRVYPFIEEATPTQIEVIVKIRADIPVNHFGANMTVTIPVPAKSNGVSARVDSGVSATGQSAEYRPKENKVVWSIKKFQGGSEHTVRAKIDLKEPISAAVRREIGPVSLNFEIPMFNVSNLQVKYLRIVEQNRTYNPHR 428          
BLAST of mRNA_H-paniculata_contig18098.4375.1 vs. uniprot
Match: A0A7S4A8F1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8F1_9STRA)

HSP 1 Score: 241 bits (614), Expect = 1.140e-74
Identity = 115/209 (55.02%), Postives = 156/209 (74.64%), Query Frame = 1
Query:   25 GNPELRLALNEDLVVGKANGTPSFGSVVLDDCNFHECAKLDEFESMRQLSFTPPDGEFALLNYRINAEFRCPFRLFPSIGDIDPYRMEVVVIVRGDMPETAAGTNVVVRVPXXXXXVSVNTEVESRVPGQTAEYSATEHRVVWTIKKFQGSSELTLRAKVTLPTVVNTAARKEVGPVSMQFEIPMYNVSNLQVRYLKIAEFAKSYNPFR 651
            GNPELRLALNEDLVVGK  G P +G+VVLDDCNFHEC +LD+FE+ R LSF PP+GEF +LNYR   +FR PFR+ P I +  PY++E++V+VR ++P+T  G++V + VP      + +    S   G +A+Y+AT+ ++ + +KKFQG  EL  RAK+TL ++     RKE+GPVSM FEIPMYNVSNLQV+YL+IAE +++YNP+R
Sbjct:  214 GNPELRLALNEDLVVGK--GGP-YGTVVLDDCNFHECVRLDDFEAQRLLSFVPPEGEFVVLNYRTAGDFRAPFRVLPQIEEATPYQLEIIVLVRSEIPDTNYGSDVTITVPCPRNCTAASATAPS---GSSADYNATQRKLTFHVKKFQGGLELAFRAKITLSSICTAQTRKEIGPVSMTFEIPMYNVSNLQVKYLRIAEASQNYNPYR 416          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18098.4375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJR2_ECTSI1.090e-12991.39Coatomer protein complex, gamma sub-unit n=1 Tax=E... [more]
A0A7S3MCI4_9STRA1.330e-8761.24Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2CZI0_9STRA1.140e-8357.42Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A835YW81_9STRA7.300e-8158.57Coatomer protein complex, gamma sub-unit n=1 Tax=T... [more]
A0A7S2UX12_9STRA9.690e-8158.85Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A812WLM7_SYMMI8.090e-7955.98AP4M protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A6A7GCG2_9CRUS1.650e-7755.92AP-4 complex subunit mu-1 n=1 Tax=Hirondellea giga... [more]
A0A7S2N1G3_9DINO3.950e-7757.75Hypothetical protein n=2 Tax=Alexandrium TaxID=292... [more]
A0A7S2SFF0_9STRA3.410e-7656.87Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S4A8F1_9STRA1.140e-7455.02Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18098contigH-paniculata_contig18098:2216..5070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score382.1
Seed ortholog evalue1.7e-103
Seed eggNOG ortholog2880.D8LJR2
KEGG koko:K12402
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005794,GO:0005802,GO:0005829,GO:0006605,GO:0006622,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006896,GO:0007034,GO:0007041,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016482,GO:0019904,GO:0030117,GO:0030119,GO:0030124,GO:0031090,GO:0031410,GO:0031904,GO:0031974,GO:0031982,GO:0031984,GO:0032588,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061462,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072657,GO:0072665,GO:0072666,GO:0090160,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:1903361,GO:1990778
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsKOG0937@1,KOG0937@2759
Ec32 ortholog descriptionCoatomer protein complex, gamma sub-unit
Ec32 orthologEc-12_002960.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons6
Model size654
Cds size654
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18098.4375.1prot_H-paniculata_contig18098.4375.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18098 2216..5070 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929408.6290562-CDS-H-paniculata_contig18098:2215..23261622929408.6290562-CDS-H-paniculata_contig18098:2215..2326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18098 2216..2326 -
1691480848.5954475-CDS-H-paniculata_contig18098:2215..23261691480848.5954475-CDS-H-paniculata_contig18098:2215..2326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18098 2216..2326 -
1622929408.6389353-CDS-H-paniculata_contig18098:2641..27401622929408.6389353-CDS-H-paniculata_contig18098:2641..2740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18098 2642..2740 -
1691480848.6085644-CDS-H-paniculata_contig18098:2641..27401691480848.6085644-CDS-H-paniculata_contig18098:2641..2740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18098 2642..2740 -
1622929408.647902-CDS-H-paniculata_contig18098:3272..33261622929408.647902-CDS-H-paniculata_contig18098:3272..3326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18098 3273..3326 -
1691480848.617668-CDS-H-paniculata_contig18098:3272..33261691480848.617668-CDS-H-paniculata_contig18098:3272..3326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18098 3273..3326 -
1622929408.657296-CDS-H-paniculata_contig18098:3541..36501622929408.657296-CDS-H-paniculata_contig18098:3541..3650Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18098 3542..3650 -
1691480848.6262586-CDS-H-paniculata_contig18098:3541..36501691480848.6262586-CDS-H-paniculata_contig18098:3541..3650Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18098 3542..3650 -
1622929408.6735785-CDS-H-paniculata_contig18098:4231..43981622929408.6735785-CDS-H-paniculata_contig18098:4231..4398Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18098 4232..4398 -
1691480848.635312-CDS-H-paniculata_contig18098:4231..43981691480848.635312-CDS-H-paniculata_contig18098:4231..4398Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18098 4232..4398 -
1622929408.6851134-CDS-H-paniculata_contig18098:4956..50701622929408.6851134-CDS-H-paniculata_contig18098:4956..5070Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18098 4957..5070 -
1691480848.6444726-CDS-H-paniculata_contig18098:4956..50701691480848.6444726-CDS-H-paniculata_contig18098:4956..5070Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18098 4957..5070 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18098.4375.1

>prot_H-paniculata_contig18098.4375.1 ID=prot_H-paniculata_contig18098.4375.1|Name=mRNA_H-paniculata_contig18098.4375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=218bp
MSLWFTFQGNPELRLALNEDLVVGKANGTPSFGSVVLDDCNFHECAKLDE
FESMRQLSFTPPDGEFALLNYRINAEFRCPFRLFPSIGDIDPYRMEVVVI
VRGDMPETAAGTNVVVRVPLPRNAVSVNTEVESRVPGQTAEYSATEHRVV
WTIKKFQGSSELTLRAKVTLPTVVNTAARKEVGPVSMQFEIPMYNVSNLQ
VRYLKIAEFAKSYNPFR*
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mRNA from alignment at H-paniculata_contig18098:2216..5070-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18098.4375.1 ID=mRNA_H-paniculata_contig18098.4375.1|Name=mRNA_H-paniculata_contig18098.4375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2855bp|location=Sequence derived from alignment at H-paniculata_contig18098:2216..5070- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATTGTGGTTTACGTTTCAAGGTAATCCTGAGCTTCGATTGGCCCT CAACGAGGACTTGGTGGTGGGAAAAGCGAACGGCACACCAAGTTTTGGCT CCGTTGTGTTAGATGTAAGTACTCGCCGTGTGACTGTCATTGGGAAGGAC ACTCAATTCGTTCAGTAGGCGTTCGGTTGTGGCGTGCATTTTTTTCCGAT TCGACACTTGAAGGAATGCGTGCTGGTTCTTCATCAATGTGTGATGTCAT CCAGCCAAGGAGTATGAGGTCATATGGTCAAGTGTTTTATAGCAGAAGGA ACGCCCGACCGCTAAGGTCGACTGGCAGGGACGAACACTATGGTTGTTAC GGTGTGTTGTCGCGGCTGGTGCTTTCCGGGGAATTTGACCAAGCTGAAAA CCTTTCGCAGAGTCGATATATTTTATCCGGCTGATCAAATATTTCGGGGT AGTTGGACGTAGACATACAGACTTGGTTAGCTTCATAAGACAGAAAAAAC ATGTCAAGACCGCGTGCAACCGAACGAGTCGGTGGGGGCATACCCACGCC ATAGATAATATTGACGAATTGAGGGTAAATTTTCCGCGTTGGCGTTATTG CTAGTGATGGCTGACAACGAATGACACAATGAGAAGCTCGCTTAACATGC CCAATTTCTACTTGGTGCACAGGACTGCAACTTCCATGAGTGCGCGAAGC TGGACGAGTTTGAGTCGATGCGGCAGCTGAGCTTCACTCCACCAGACGGA GAGTTTGCTCTTCTGAACTACCGGATCAATGCAGAGTTTCGATGCCCGTT CCGGCTGTTTCCTAGCATAGGCGACATCGATCCCTATAGGTACACTCGTG CAGCTGTTCGCAAGTCACCCTTGAGGATTTTTTTATTGGCTCGCAATTGT TCAAAGGTTATCGTCCAATGTTAGTCTACATGGAAATCCAAAAGTTTTTC TCTAGGTTATTGACTTGGTGTAGTTTTCCCCGGCACAGTTCTACTCGTAT CAGAGGCTCGCTCCCGGCTGTACGGTAGACGTCGTACCCCCGATATCGTC ACAAAAGTCGCGAGGAAGCACGTGTTGTGTCGTATCTCTGCGCTTGTCAA GGGCAAAACCAATGAACAAACAAAAAGTAAACAGAGATAATTGAAAGTTA TTGCTCCGCGTAATTGACGAAAGGTGGCACTGGGGGTGCTCGTCAAGATC AGGTGGAATCGACCGGAAGATAGGTCCCATGGTTTCACGGGTTTCAAGTT ATGTTGTCGTTGTTTCGTGTCGTTGTGTTTCCCCTGTCCGCGCGTATTCT GTTATTGTTGTTTGCTGTGTTGTGTAACCTCCGCAGCAGGCAAAGTACAC TAACCACACTCACTTATCGCTTCCAATTATCGCTGACGCTGCCTTCCTTG CTTGCTTCGCTGTCATTAAGAATGGAGGTTGTGGTGATTGTTCGAGGGGA CATGCCGGAGACGGCAGCAGGGACTAACGTCGTTGTTCGGGTCCCCTTGC CGAGAAACGCGGTTAGCGTCAACACAGAGGTGAAAAAATTACTCCAGGTG TTACATCGAAACGTTATGCCCCTCCTATCGTTTTGTGTCTTGTGCCTGCC AAGTATGTGGACCCATGGATTTTCCAGTGCTGTAGAGTTGTCGTTAGCCT TGGAAAGTGCGTGCAGGCGCGTGCAGGATCATTAGTGAGTGCTTGTGTGC AACCGCTAAACTGCGTGTGGATTATTTTTGTGGTTCGTGTGCAGGTGGAA TCGAGAGTACCGGGGCAAACGGCGGAGTATAGCGCTACGGAGCATCGGGT GAGAGCAGCGCCGGCTTCTGTGTCGCTCCAGCTTTGTCCTTGTGTGTTTT CTCTTGGGGTTCGTTGGTGTATGCGCCGTTCCATGACCTGTTCTAGTGAA AGTGGTTCCCTGAGCGTCGCCTCTAGTCTGGCTGGATAACATACGGGTGC CGACAGCGACCGAGTGCCCAAACTGCAAGCTTTACCCTCAGAAGAAAAGG GCGCCCTCAGACTAAATTTCTTCAAATGACACCTGTGCAGTTTCTACTTT GAGTCTATCATTGCATGTACAAACGGACTGGAAACATTCCCGACCATTTG ATACATTCAAAGCTTTCGCTCGTTGCTTTGCGTTGTAATGCCCACCGTGG GAAATGTGTACGTGTGGGGAATTGATGTACATGTTGGCTTTCGAAACTCA ACCTACTATTTATACCAGTGGTATGTGCCTGGTTGCTTCTATTTTTCTCT CATTTCGCTTGACGTCGATGTATGTGTTTGTCGCTCTATTCTTGTGCATG GACCACATATTTGCGGGTACGTTTGCCAAGGTGGTTTGGACTATCAAGAA ATTCCAGGGGTCTTCCGAGCTCACGCTGCGAGCGAAGGTCACATTGCCGA CCGTCGTCAACACAGCGGCACGAAAAGAGGTTGAGCAATCTTTGTCATTA CCGCATCGTAAAAAATGCGACGAAGGGTCTCGGTGACGCTGCCCAATTGG TTGTTTTAGTTCGTTCCACATTGGCACTGGTGTAGTACGAAGAAGTGATT CGTAACGGTGTTTTTTCGTGAAGCGGCAAGTTGGCAGGGCTAGGGTTTGG ATTGAACATGAGCGAACCCTAGAACACACAGTAAAGTGCTGCGGGGTGCC TCTCGTAGGGCGAAGTCAGGTGGTGGGAGAAGTCTTGCCAGCTTCACCTT CTGTTCTGACCGTCGTGCGTTGTTTTTCCTCGGATGCTTTCCAGGTCGGT CCGGTGTCGATGCAGTTCGAGATTCCCATGTACAATGTCAGCAATCTGCA GGTGCGGTACCTCAAGATCGCGGAGTTCGCCAAATCCTACAACCCCTTCC GGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig18098:2216..5070-

>mRNA_H-paniculata_contig18098.4375.1 ID=mRNA_H-paniculata_contig18098.4375.1|Name=mRNA_H-paniculata_contig18098.4375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1308bp|location=Sequence derived from alignment at H-paniculata_contig18098:2216..5070- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATTGTGGTTTACGTTTCAAGGTAATCCTGAGCTTCGATTGGCCCT
CAACGAGGACTTGGTGGTGGGAAAAGCGAACGGCACACCAAGTTTTGGCT
CCGTTGTGTTAGATATGTCATTGTGGTTTACGTTTCAAGGTAATCCTGAG
CTTCGATTGGCCCTCAACGAGGACTTGGTGGTGGGAAAAGCGAACGGCAC
ACCAAGTTTTGGCTCCGTTGTGTTAGATGACTGCAACTTCCATGAGTGCG
CGAAGCTGGACGAGTTTGAGTCGATGCGGCAGCTGAGCTTCACTCCACCA
GACGGAGAGTTTGCTCTTCTGAACTACCGGATCAATGCAGAGTTTCGATG
CCCGTTCCGGCTGTTTCCTAGCATAGGCGACATCGATCCCTATAGGACTG
CAACTTCCATGAGTGCGCGAAGCTGGACGAGTTTGAGTCGATGCGGCAGC
TGAGCTTCACTCCACCAGACGGAGAGTTTGCTCTTCTGAACTACCGGATC
AATGCAGAGTTTCGATGCCCGTTCCGGCTGTTTCCTAGCATAGGCGACAT
CGATCCCTATAGAATGGAGGTTGTGGTGATTGTTCGAGGGGACATGCCGG
AGACGGCAGCAGGGACTAACGTCGTTGTTCGGGTCCCCTTGCCGAGAAAC
GCGGTTAGCGTCAACACAGAGAATGGAGGTTGTGGTGATTGTTCGAGGGG
ACATGCCGGAGACGGCAGCAGGGACTAACGTCGTTGTTCGGGTCCCCTTG
CCGAGAAACGCGGTTAGCGTCAACACAGAGGTGGAATCGAGAGTACCGGG
GCAAACGGCGGAGTATAGCGCTACGGAGCATCGGGTGGAATCGAGAGTAC
CGGGGCAAACGGCGGAGTATAGCGCTACGGAGCATCGGGTGGTTTGGACT
ATCAAGAAATTCCAGGGGTCTTCCGAGCTCACGCTGCGAGCGAAGGTCAC
ATTGCCGACCGTCGTCAACACAGCGGCACGAAAAGAGGTGGTTTGGACTA
TCAAGAAATTCCAGGGGTCTTCCGAGCTCACGCTGCGAGCGAAGGTCACA
TTGCCGACCGTCGTCAACACAGCGGCACGAAAAGAGGTCGGTCCGGTGTC
GATGCAGTTCGAGATTCCCATGTACAATGTCAGCAATCTGCAGGTGCGGT
ACCTCAAGATCGCGGAGTTCGCCAAATCCTACAACCCCTTCCGGTAGGTC
GGTCCGGTGTCGATGCAGTTCGAGATTCCCATGTACAATGTCAGCAATCT
GCAGGTGCGGTACCTCAAGATCGCGGAGTTCGCCAAATCCTACAACCCCT
TCCGGTAG
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