mRNA_H-paniculata_contig18098.4375.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig18098.4375.1 vs. uniprot
Match: D8LJR2_ECTSI (Coatomer protein complex, gamma sub-unit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR2_ECTSI) HSP 1 Score: 381 bits (979), Expect = 1.090e-129 Identity = 191/209 (91.39%), Postives = 195/209 (93.30%), Query Frame = 1
Query: 25 GNPELRLALNEDLVVGKANGTPSFGSVVLDDCNFHECAKLDEFESMRQLSFTPPDGEFALLNYRINAEFRCPFRLFPSIGDIDPYRMEVVVIVRGDMPETAAGTNVVVRVPXXXXXVSVNTEVESRVPGQTAEYSATEHRVVWTIKKFQGSSELTLRAKVTLPTVVNTAARKEVGPVSMQFEIPMYNVSNLQVRYLKIAEFAKSYNPFR 651
GNPELRLALNEDLVVGKAN SFGSVVLDDCNFHECAKLDEFESMRQLSFTPPDGEF LLNYR+NAEFRCPFRLFPSIGDIDPYRMEVVVIVR DMPETAAGTNVVVR+P VSV++EVESRVPGQTAEYSA EHRVVWTIKKFQGSSELTLRAKVTLP VVN A RKEVGPVSMQFEIPMYNVSNLQVRYLKIAEFAKSYNPFR
Sbjct: 219 GNPELRLALNEDLVVGKANAGSSFGSVVLDDCNFHECAKLDEFESMRQLSFTPPDGEFVLLNYRMNAEFRCPFRLFPSIGDIDPYRMEVVVIVRADMPETAAGTNVVVRLPMPRNAVSVSSEVESRVPGQTAEYSANEHRVVWTIKKFQGSSELTLRAKVTLPNVVNAANRKEVGPVSMQFEIPMYNVSNLQVRYLKIAEFAKSYNPFR 427
BLAST of mRNA_H-paniculata_contig18098.4375.1 vs. uniprot
Match: A0A7S3MCI4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCI4_9STRA) HSP 1 Score: 266 bits (681), Expect = 1.330e-87 Identity = 128/209 (61.24%), Postives = 164/209 (78.47%), Query Frame = 1
Query: 25 GNPELRLALNEDLVVGKANGTPSFGSVVLDDCNFHECAKLDEFESMRQLSFTPPDGEFALLNYRINAEFRCPFRLFPSIGDIDPYRMEVVVIVRGDMPETAAGTNVVVRVPXXXXXVSVNTEVESRVPGQTAEYSATEHRVVWTIKKFQGSSELTLRAKVTLPTVVNTAARKEVGPVSMQFEIPMYNVSNLQVRYLKIAEFAKSYNPFR 651
GNPELRLALNEDLV+GK NG S+GSVVLDDCNFHEC LDEFES R L F PPDGEFA+LNYRI A++R PF+L+P+I + Y+++V++++R D+PE G+NV +R+P VSV E +PG +AEY+A E +V++ I+KF GSSE++LRA++TL T V A +KE+GP+SM FEIPMYNVSNLQVRYL+I+E KSYNP R
Sbjct: 1 GNPELRLALNEDLVIGKGNG--SYGSVVLDDCNFHECVHLDEFESSRTLHFLPPDGEFAVLNYRITADYRAPFKLYPTIEESGTYKVDVIIVLRADIPEANYGSNVTLRLPVPRNTVSVLPEFSIEMPGCSAEYNANEKKVLFNIRKFNGSSEISLRARITLDTPVTAAHKKEIGPISMSFEIPMYNVSNLQVRYLRISETHKSYNPCR 207
BLAST of mRNA_H-paniculata_contig18098.4375.1 vs. uniprot
Match: A0A7S2CZI0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CZI0_9STRA) HSP 1 Score: 258 bits (660), Expect = 1.140e-83 Identity = 120/209 (57.42%), Postives = 152/209 (72.73%), Query Frame = 1
Query: 25 GNPELRLALNEDLVVGKANGTPSFGSVVLDDCNFHECAKLDEFESMRQLSFTPPDGEFALLNYRINAEFRCPFRLFPSIGDIDPYRMEVVVIVRGDMPETAAGTNVVVRVPXXXXXVSVNTEVESRVPGQTAEYSATEHRVVWTIKKFQGSSELTLRAKVTLPTVVNTAARKEVGPVSMQFEIPMYNVSNLQVRYLKIAEFAKSYNPFR 651
GNPELRLALNEDLV+GK ++GSV LDDCNFHEC +L +FE+ R LSF PPDGEF +LNYR+ EFR PFR+FP+I ++ PY+++V + R D+PET G NVV+R+P S E+ GQ AE+S T V WTIKKFQG++E T+R K+TL T RKE+GP+S+ FE+PMYNVSNL VRYL+IAE K+YNP+R
Sbjct: 62 GNPELRLALNEDLVIGKGG---AYGSVTLDDCNFHECVQLQDFETSRTLSFIPPDGEFVVLNYRVTGEFRAPFRVFPAIDEVSPYKLDVTIRCRADIPETNYGANVVIRIPVPRNTASAGCELAQNAVGQQAEFSNTAKHVTWTIKKFQGNTEQTIRVKITLSDPATTNTRKEIGPISLNFEVPMYNVSNLAVRYLRIAEQGKAYNPYR 267
BLAST of mRNA_H-paniculata_contig18098.4375.1 vs. uniprot
Match: A0A835YW81_9STRA (Coatomer protein complex, gamma sub-unit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW81_9STRA) HSP 1 Score: 257 bits (656), Expect = 7.300e-81 Identity = 123/210 (58.57%), Postives = 160/210 (76.19%), Query Frame = 1
Query: 25 GNPELRLALNEDLVVGKANGTPSFGSVVLDDCNFHECAKLDEFESMRQLSFTPPDGEFALLNYRINAEFRCPFRLFPSIGDIDPYRMEVVVIVRGDMPETAAGTNVVVRVPXXXXXVSVNTEVESR-VPGQTAEYSATEHRVVWTIKKFQGSSELTLRAKVTLPTVVNTAARKEVGPVSMQFEIPMYNVSNLQVRYLKIAEFAKSYNPFR 651
GNPEL+LALNEDLV+G+ T ++G+VVLDDCNFHEC +LD+FES RQL+ PPDGEF LNYRI AEFR PFR+FPS+ + D +E++++VR DMPE G+NVVV VP +V+ E++ R +PGQ+AEY+AT RV WTIK+FQG +E +LR +VTL R+E+GP+S FE+PMY+VS LQVRYLKIA+ K+YNP+R
Sbjct: 218 GNPELKLALNEDLVIGRGQ-TSTYGAVVLDDCNFHECVRLDDFESGRQLTLVPPDGEFVALNYRITAEFRAPFRMFPSVTETDALHLELLLLVRADMPEAQYGSNVVVSVPVPRAAGTVSAEIDPRALPGQSAEYNATAKRVDWTIKRFQGGTEQSLRVRVTLTQPCTATTRRELGPISASFEVPMYSVSGLQVRYLKIADAGKAYNPYR 426
BLAST of mRNA_H-paniculata_contig18098.4375.1 vs. uniprot
Match: A0A7S2UX12_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UX12_9STRA) HSP 1 Score: 257 bits (657), Expect = 9.690e-81 Identity = 123/209 (58.85%), Postives = 155/209 (74.16%), Query Frame = 1
Query: 25 GNPELRLALNEDLVVGKANGTPSFGSVVLDDCNFHECAKLDEFESMRQLSFTPPDGEFALLNYRINAEFRCPFRLFPSIGDIDPYRMEVVVIVRGDMPETAAGTNVVVRVPXXXXXVSVNTEVESRVPGQTAEYSATEHRVVWTIKKFQGSSELTLRAKVTLPTVVNTAARKEVGPVSMQFEIPMYNVSNLQVRYLKIAEFAKSYNPFR 651
GNPELRLALN+DLV+GK G +GSVVLDDCNFHE +LD FE R LS PPDGEF +LNYR+ +EFR PFRLFP+I ++ PY++E+V++VR D+PE+ G NV V +P S E+ V GQ+ EY E ++VWTIKKF G +E LRAK+TL + AAR+E+GP+SM FEIPMYNVS+LQVRYL+IAE K+YNP+R
Sbjct: 244 GNPELRLALNDDLVIGKGGG--QYGSVVLDDCNFHEAVRLDSFEMSRTLSLVPPDGEFVVLNYRVTSEFRTPFRLFPAIEEVSPYKLELVLMVRADIPESNYGANVTVTIPVPRTAASATGEMGENVVGQSCEYDQGERKLVWTIKKFPGGTEQGLRAKITLASATAPAARREIGPISMGFEIPMYNVSHLQVRYLRIAEADKTYNPYR 450
BLAST of mRNA_H-paniculata_contig18098.4375.1 vs. uniprot
Match: A0A812WLM7_SYMMI (AP4M protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WLM7_SYMMI) HSP 1 Score: 251 bits (642), Expect = 8.090e-79 Identity = 117/209 (55.98%), Postives = 157/209 (75.12%), Query Frame = 1
Query: 25 GNPELRLALNEDLVVGKANGTPSFGSVVLDDCNFHECAKLDEFESMRQLSFTPPDGEFALLNYRINAEFRCPFRLFPSIGDIDPYRMEVVVIVRGDMPETAAGTNVVVRVPXXXXXVSVNTEVESRVPGQTAEYSATEHRVVWTIKKFQGSSELTLRAKVTLPTVVNTAARKEVGPVSMQFEIPMYNVSNLQVRYLKIAEFAKSYNPFR 651
GNPELRLALNEDLV+GK + ++GSVV+DDCNFHEC +LDEFE+ R L F PPDGEF +LNYRI +FR PFRLFPSI + PY+++V+ +VR ++PE G VV+ +P SV+ E+ +PG +AE+ ++ +V WTI+K G+SEL +R K+TL A ++E+GP++MQFEIPMYNVSNLQV+YL+I+E KSYNP+R
Sbjct: 217 GNPELRLALNEDLVIGKGS---TYGSVVMDDCNFHECVRLDEFEASRTLHFVPPDGEFTVLNYRITGDFRSPFRLFPSIEETGPYKLDVLCLVRAEIPEGNHGAGVVINIPVPRATASVSFEMSVNMPGSSAEFISSSKKVQWTIRKMVGASELAIRCKLTLDQPATAAHKREIGPIAMQFEIPMYNVSNLQVKYLRISETHKSYNPYR 422
BLAST of mRNA_H-paniculata_contig18098.4375.1 vs. uniprot
Match: A0A6A7GCG2_9CRUS (AP-4 complex subunit mu-1 n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GCG2_9CRUS) HSP 1 Score: 248 bits (634), Expect = 1.650e-77 Identity = 118/211 (55.92%), Postives = 155/211 (73.46%), Query Frame = 1
Query: 25 GNPELRLALNEDLVVGKAN--GTPSFGSVVLDDCNFHECAKLDEFESMRQLSFTPPDGEFALLNYRINAEFRCPFRLFPSIGDIDPYRMEVVVIVRGDMPETAAGTNVVVRVPXXXXXVSVNTEVESRVPGQTAEYSATEHRVVWTIKKFQGSSELTLRAKVTLPTVVNTAARKEVGPVSMQFEIPMYNVSNLQVRYLKIAEFAKSYNPFR 651
GNPELRLALNEDLV+GK+N G+ +G+VVLDDCNFHEC +L+EF++ R LSF PPDGEF++LNYR+ EFR PFR+FP + PY++E+++ +R D+PE G NV+V+ P SV+ ++ GQ +EYSA + +V W IKKF G +E TLR K+TL + T RKE+GP+SM FEIPM+N S LQVRYL+I E KSYNP+R
Sbjct: 221 GNPELRLALNEDLVIGKSNVTGSGGYGNVVLDDCNFHECVRLEEFDATRTLSFQPPDGEFSVLNYRVTGEFRAPFRIFPFFELVTPYKIELIIKIRADVPEQNYGGNVLVQFPVPKATTSVSCDLGLGTIGQASEYSAVDKKVFWKIKKFGGGTEQTLRVKITLGSQHTTIVRKEIGPISMTFEIPMFNASGLQVRYLRIMESRKSYNPYR 431
BLAST of mRNA_H-paniculata_contig18098.4375.1 vs. uniprot
Match: A0A7S2N1G3_9DINO (Hypothetical protein n=2 Tax=Alexandrium TaxID=2924 RepID=A0A7S2N1G3_9DINO) HSP 1 Score: 247 bits (631), Expect = 3.950e-77 Identity = 123/213 (57.75%), Postives = 156/213 (73.24%), Query Frame = 1
Query: 25 GNPELRLALNEDLVVGKAN--GTPSFGSVVLDDCNFHECAKLDEFESMRQLSFTPPDGEFALLNYRINAEFRCPFRLFPSIGDIDPYRMEVVVIVRGDMPETAAGTNVVVRVPXXXXXVSVNTEVESRVPGQTAEYSATEHRVVWTIKKFQGSSELTLRAKVTLPTVV--NTAARKEVGPVSMQFEIPMYNVSNLQVRYLKIAEFAKSYNPFR 651
GNPEL+LALNED+ + N G +G+VVLDDCNFHEC L++F R LS PPDGEFA++NYRI +FR PFR+FP + P+++EV + VR D+PE G NV + SV+TE+ S++ GQTAEY ATEHR+VW IKKFQG+SE +++A+VTL + V N+ +KEVGPVS+ FEIPMYNVSNLQVRYL+IAE KSYNP R
Sbjct: 213 GNPELKLALNEDITIKNQNIGGHGGYGAVVLDDCNFHECVDLEDFADQRTLSLYPPDGEFAVMNYRITGDFRVPFRIFPFVEQQTPHKLEVTIKVRADIPEQNYGGNVQISCAMPKSAASVSTELGSQITGQTAEYLATEHRLVWNIKKFQGASECSIKARVTLSSPVGSNSNVKKEVGPVSLSFEIPMYNVSNLQVRYLRIAERHKSYNPCR 425
BLAST of mRNA_H-paniculata_contig18098.4375.1 vs. uniprot
Match: A0A7S2SFF0_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SFF0_9STRA) HSP 1 Score: 245 bits (625), Expect = 3.410e-76 Identity = 120/211 (56.87%), Postives = 158/211 (74.88%), Query Frame = 1
Query: 25 GNPELRLALNEDLVVGKANGTPSFGSVVLDDCNFHECAKLDEFESMRQLSFTPPDGEFALLNYRINAEFRCPFRLFPSIGDIDPYRMEVVVIVRGDMPETAAGTNVVVRVPXXXXXVSVNTEVESRVP--GQTAEYSATEHRVVWTIKKFQGSSELTLRAKVTLPTVVNTAARKEVGPVSMQFEIPMYNVSNLQVRYLKIAEFAKSYNPFR 651
GNP LRLALNEDLVVGK +G+ ++GSVVLDDCNFHEC +LDEFE+MR L+F PPDGEF ++NYRI+ EF PFR++P I + P ++EV+V +R D+P G N+ V +P V+ V+S V GQ+AEY E++VVW+IKKFQG SE T+RAK+ L ++ A R+E+GPVS+ FEIPM+NVSNLQV+YL+I E ++YNP R
Sbjct: 219 GNPPLRLALNEDLVVGKGDGS-NYGSVVLDDCNFHECVRLDEFETMRTLNFVPPDGEFVVMNYRISNEFVAPFRVYPFIEEATPTQIEVIVKIRADIPVNHFGANMTVTIPVPAKSNGVSARVDSGVSATGQSAEYRPKENKVVWSIKKFQGGSEHTVRAKIDLKEPISAAVRREIGPVSLNFEIPMFNVSNLQVKYLRIVEQNRTYNPHR 428
BLAST of mRNA_H-paniculata_contig18098.4375.1 vs. uniprot
Match: A0A7S4A8F1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8F1_9STRA) HSP 1 Score: 241 bits (614), Expect = 1.140e-74 Identity = 115/209 (55.02%), Postives = 156/209 (74.64%), Query Frame = 1
Query: 25 GNPELRLALNEDLVVGKANGTPSFGSVVLDDCNFHECAKLDEFESMRQLSFTPPDGEFALLNYRINAEFRCPFRLFPSIGDIDPYRMEVVVIVRGDMPETAAGTNVVVRVPXXXXXVSVNTEVESRVPGQTAEYSATEHRVVWTIKKFQGSSELTLRAKVTLPTVVNTAARKEVGPVSMQFEIPMYNVSNLQVRYLKIAEFAKSYNPFR 651
GNPELRLALNEDLVVGK G P +G+VVLDDCNFHEC +LD+FE+ R LSF PP+GEF +LNYR +FR PFR+ P I + PY++E++V+VR ++P+T G++V + VP + + S G +A+Y+AT+ ++ + +KKFQG EL RAK+TL ++ RKE+GPVSM FEIPMYNVSNLQV+YL+IAE +++YNP+R
Sbjct: 214 GNPELRLALNEDLVVGK--GGP-YGTVVLDDCNFHECVRLDDFEAQRLLSFVPPEGEFVVLNYRTAGDFRAPFRVLPQIEEATPYQLEIIVLVRSEIPDTNYGSDVTITVPCPRNCTAASATAPS---GSSADYNATQRKLTFHVKKFQGGLELAFRAKITLSSICTAQTRKEIGPVSMTFEIPMYNVSNLQVKYLRIAEASQNYNPYR 416 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18098.4375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18098.4375.1 >prot_H-paniculata_contig18098.4375.1 ID=prot_H-paniculata_contig18098.4375.1|Name=mRNA_H-paniculata_contig18098.4375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=218bp MSLWFTFQGNPELRLALNEDLVVGKANGTPSFGSVVLDDCNFHECAKLDEback to top mRNA from alignment at H-paniculata_contig18098:2216..5070- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18098.4375.1 ID=mRNA_H-paniculata_contig18098.4375.1|Name=mRNA_H-paniculata_contig18098.4375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2855bp|location=Sequence derived from alignment at H-paniculata_contig18098:2216..5070- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18098:2216..5070- >mRNA_H-paniculata_contig18098.4375.1 ID=mRNA_H-paniculata_contig18098.4375.1|Name=mRNA_H-paniculata_contig18098.4375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1308bp|location=Sequence derived from alignment at H-paniculata_contig18098:2216..5070- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |