mRNA_H-paniculata_contig18068.4363.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18068.4363.1
Unique NamemRNA_H-paniculata_contig18068.4363.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18068.4363.1 vs. uniprot
Match: D8LUB2_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUB2_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.280e-8
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   70 MVDVRHRRCDFDSCKKQPNYGYEGQRACYCSAHKLPTMV 186
            M+DVR RRC    CK+QP+YG+EG+RACYC+AHKL   V
Sbjct:    1 MIDVRSRRCAEPGCKRQPSYGFEGKRACYCAAHKLEGQV 39
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18068.4363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUB2_ECTSI1.280e-864.10EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18068contigH-paniculata_contig18068:454..3257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size387
Cds size387
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18068.4363.1prot_H-paniculata_contig18068.4363.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18068 454..3257 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929406.7746909-CDS-H-paniculata_contig18068:453..5951622929406.7746909-CDS-H-paniculata_contig18068:453..595Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18068 454..595 -
1691480847.6153917-CDS-H-paniculata_contig18068:453..5951691480847.6153917-CDS-H-paniculata_contig18068:453..595Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18068 454..595 -
1622929406.79393-CDS-H-paniculata_contig18068:1509..16621622929406.79393-CDS-H-paniculata_contig18068:1509..1662Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18068 1510..1662 -
1691480847.6235073-CDS-H-paniculata_contig18068:1509..16621691480847.6235073-CDS-H-paniculata_contig18068:1509..1662Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18068 1510..1662 -
1622929406.8137634-CDS-H-paniculata_contig18068:3165..32571622929406.8137634-CDS-H-paniculata_contig18068:3165..3257Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18068 3166..3257 -
1691480847.6310122-CDS-H-paniculata_contig18068:3165..32571691480847.6310122-CDS-H-paniculata_contig18068:3165..3257Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18068 3166..3257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18068.4363.1

>prot_H-paniculata_contig18068.4363.1 ID=prot_H-paniculata_contig18068.4363.1|Name=mRNA_H-paniculata_contig18068.4363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
QEPYFGESGGKARFCATHKPDDRMVDVRHRRCDFDSCKKQPNYGYEGQRA
CYCSAHKLPTMVDVKHRQEESLKHHRASSLGIRCAQDRCRGYSSFAFPGS
REKFCAEHRLEGMLPSGRGRSAAAVAAAA
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mRNA from alignment at H-paniculata_contig18068:454..3257-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18068.4363.1 ID=mRNA_H-paniculata_contig18068.4363.1|Name=mRNA_H-paniculata_contig18068.4363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2804bp|location=Sequence derived from alignment at H-paniculata_contig18068:454..3257- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAGCCATACTTCGGGGAGAGCGGGGGCAAGGCGCGATTTTGCGCTAC
CCACAAGCCCGATGACAGGATGGTGGACGTTCGTCATCGCCGGTGTGTGT
ATCTCAAAACGAGATGTTTGCCATTCATCAGTACGTTTACTGATATCTTT
TTCATGAAACGGAGTGCCTCAGAAACACCTTTCAAACACATTGTCAAAAC
TAAACAGTCGCTGAAGAATAAACGAAGGACACATACATGTATGTACATAG
ACATCAAATCATTCAGCCATAGATGTGGTTGTTTTTTCTCGGGCCACAAT
GATGGATCATGGCAACCGATCATTTTTTGTAGTGAGAGTGAAAAACAAAA
AGCATGAACACAAAATTGTGTTCATGGCAAGATTGTTTTGTCGGGTTTTT
TTTTGTTTTTTTTTTTGGTTTTGTTTTTTCCTCCCTTTCCTCTCTCAAAC
ACAATTATTGGTCCAATTCATGAGAAATTTACAGCTGAAGAGCGATAACT
GTGACACCGCTGCTCGTTTTGGCCCAACGGGTGTGACAGCGAGGTTTCTA
CCCAGGTCGGCCCCAAAAACGTCCATGGCTTTTTCTGTTTTGTGATTTGT
TTATTTTTACGAGGTCGCGAGCCCGGGAAAGCTGCGAGGTATACCCCACT
AAGTGAGTAATACTACCTTCTTGACTTGGTAACTTTGTAAGATTCAGAAG
GCAAAAGTTATATTAATTTTCTTCCTAAAAAATTTCAGTCTCATAAAAAA
AATCACAACGTTTATTACTACAAAGATGTACTTAACATTTTATAAGCCAA
AAAACATATGTAAATTAATTAAACGAACTTCTAAGCATTAAAAACTTGAG
CATATTGGGATTTGAACCCAAAAGCCTCGGATGAAAAGTCCACCAATAGC
CCTAGTACCAAGCCCGTCGCGTGCCAAACCGACCCCAGTAGCGTCTGTAA
CCGCCCAAACGCCAGGTGTTTGCAACGACCGTGGAGCCAGGTTCGTGTAG
GAATCCGTGCAGATACGTGGTAATTACATTGCATTTGAAACCAAGGACTA
CAGTTTACCATAGGTATTTTGGTGACCAACTAACTGGGCTAACACTCTGG
TTCGATATTGTAGCGGAGCTATCCTACGATAGAGGGGGGACACATCCGGA
GTAACCCCTTTCAGTGGAAGGAGTGTATTTCACCAGTGACCACCCGAACG
TTGAATATCCCGACCAGATCAAGCTGTTGTTAACATTTTTTTATTTTTAG
TTTGAGCTGTCCTTGGAGTCACTCACATGGTTGAATGAATCTAACATGAA
ATATATTCAGTCTCTAATAGAGGTTGAGATATCGGCCTGAAATATAGGGA
TTACCCCCCTTCGAAATTGGGCTCAACACGCAAGGATTGAGGTAGATGAA
ACTATTTCTGAGACACATTTGGCAACGCGGTTGGCCATCGGAAATCGCCC
AGATGGGAACAAAGCTCCGTCCTCCCGAGGAGACGCGGTCGATGATTCAA
CAACTGCGACATGTCAAACATGAGTACGCCACTTGATTGACCTCATATTG
CTGATAAGTGTACCCTCCCGTCCCCGGCGTCCCCCCAAACTGCAGTTGCG
ATTTCGACTCTTGCAAGAAGCAGCCCAACTACGGCTACGAGGGTCAGCGG
GCATGTTATTGCTCAGCGCACAAATTGCCAACCATGGTGGACGTGAAGCA
CAGGCAAGAAGAAAGCTTGAAGCACCACCGAGCTTCCTCGCTCGGCATGT
ACAATACATATCATATAATACTCTCTTGGGAGTCTACTACCTACGTGTCC
GATGAGCAAGCGGTTGAGCCTCACACGAAATACGGTATATGAGTTTCTTG
CTGAATAGCCAGTCGTGAGTGTTAAAAAAAGACCTTCATGGCAACAAGTA
TCCGTAGTCGAATTACGAGTGTACGGGTACGGGTATCATGGTTGTTTTCC
CGTCAGGGGACGAAACGTGTAGAGAATGACCTTAACCCGCTCAATGATTA
TGTGTACATGTGGGCGGTTGGACCGAGCGGCCCGAGTGTTCTCATGCCGG
TGGTTTTGTCATTTGTTTCAATGGATGATGACACAACCCTGATGCAGACG
AGTTCATTCCACTCTCATGTATTGTTGAAGATATATACTTTTTCGCTGGC
CGAAATTAACAAACAGACACATGGTCTCTATCAAGTCATTTTTTTTTTTT
AACCCCGGGAAGGCTAAGGCAAAAACCTCTACCCAATGCTTCCACACCGA
AGTAGATCTACATTTCCTTTTTCAGAACAGAGTTATTGTTCCTCTGCGGG
GTAGGCGCCACCCCGTTTTGGCTGAACCAGGTAGGCAGTGTGGGGGTTGC
ATCCACTAAATCACCTCTGCCTAGACTTCCAGTCATGCTCAGTTCACGAG
CTACCCTACCCGTTCGGGCGTAGGTCCGTGGTCTTTATCAAGCCATTTAA
TTGTTTATTACCTCAATCAACTACAAGCACATCATTATTTTTTTCATTAT
TCAACTTCTAGATGTCAACATCGTGCACTTTTGCTTCAGTGTGTTTTTCT
GTTTTTGGCAAAACTCAACTATTGATTTTCCACGTTACTCACTTCCGCTC
CCCATCGTGGTCGCTTTTTGTTGTTGTGGTGGATGCTGTCGGTCGCATGC
GTGCAAAAGCAGACGTTGTGCACAGGATCGTTGCCGAGGCTACTCTTCCT
TCGCGTTCCCAGGGTCACGGGAAAAGTTTTGCGCGGAGCACCGACTCGAG
GGCATGTTGCCTTCTGGCCGTGGCCGTTCCGCAGCAGCCGTCGCCGCAGC
AGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig18068:454..3257-

>mRNA_H-paniculata_contig18068.4363.1 ID=mRNA_H-paniculata_contig18068.4363.1|Name=mRNA_H-paniculata_contig18068.4363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig18068:454..3257- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAGCCATACTTCGGGGAGAGCGGGGGCAAGGCGCGATTTTGCGCTAC
CCACAAGCCCGATGACAGGATGGTGGACGTTCGTCATCGCCGCAGGAGCC
ATACTTCGGGGAGAGCGGGGGCAAGGCGCGATTTTGCGCTACCCACAAGC
CCGATGACAGGATGGTGGACGTTCGTCATCGCCGTTGCGATTTCGACTCT
TGCAAGAAGCAGCCCAACTACGGCTACGAGGGTCAGCGGGCATGTTATTG
CTCAGCGCACAAATTGCCAACCATGGTGGACGTGAAGCACAGGCAAGAAG
AAAGCTTGAAGCACCACCGAGCTTCCTCGCTCGGCATTTGCGATTTCGAC
TCTTGCAAGAAGCAGCCCAACTACGGCTACGAGGGTCAGCGGGCATGTTA
TTGCTCAGCGCACAAATTGCCAACCATGGTGGACGTGAAGCACAGGCAAG
AAGAAAGCTTGAAGCACCACCGAGCTTCCTCGCTCGGCATACGTTGTGCA
CAGGATCGTTGCCGAGGCTACTCTTCCTTCGCGTTCCCAGGGTCACGGGA
AAAGTTTTGCGCGGAGCACCGACTCGAGGGCATGTTGCCTTCTGGCCGTG
GCCGTTCCGCAGCAGCCGTCGCCGCAGCAGCAACGTTGTGCACAGGATCG
TTGCCGAGGCTACTCTTCCTTCGCGTTCCCAGGGTCACGGGAAAAGTTTT
GCGCGGAGCACCGACTCGAGGGCATGTTGCCTTCTGGCCGTGGCCGTTCC
GCAGCAGCCGTCGCCGCAGCAGCA
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