prot_H-paniculata_contig1806.4362.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig1806.4362.1
Unique Name	prot_H-paniculata_contig1806.4362.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	66

Homology

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BLAST of mRNA_H-paniculata_contig1806.4362.1 vs. uniprot
Match: D8LG28_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG28_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 7.900e-18
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 0

Query:    9 ALFFAVFNGLGMIAFTLASTLIGGGSFGKGRQPVPPQPFVFGAFGLGFFAAAPYLALR 66
            A+F AVFN LG +   +AS L+GGGSFGKGRQPVP  PFVFGAF LGFF+  PYLA+R
Sbjct:  195 AIFTAVFNALGFLPGIMASMLVGGGSFGKGRQPVPAPPFVFGAFALGFFSLGPYLAVR 252

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BLAST of mRNA_H-paniculata_contig1806.4362.1 vs. uniprot
Match: A0A6H5L8J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8J8_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.190e-17
Identity = 39/58 (67.24%), Postives = 44/58 (75.86%), Query Frame = 0

Query:    9 ALFFAVFNGLGMIAFTLASTLIGGGSFGKGRQPVPPQPFVFGAFGLGFFAAAPYLALR 66
            A+F AVFN LG +    AS L+GGGSF KGRQPVP  PFVFGAF LGFF+  PYLA+R
Sbjct:    5 AIFTAVFNALGFLPAITASMLVGGGSFAKGRQPVPAPPFVFGAFALGFFSLGPYLAVR 62

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BLAST of mRNA_H-paniculata_contig1806.4362.1 vs. uniprot
Match: A0A6U8J661_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6U8J661_9EUGL)

HSP 1 Score: 53.1 bits (126), Expect = 1.650e-6
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 0

Query:   10 LFFAVFNGLGMIAFTLASTLIGGGSFGKGRQPVPPQPFVFGAFGLGFFAAAPYLALR 66
            +FF++FN LG++    A+ L+ G       Q +P  PF+ G+F LGFFA APYLALR
Sbjct:  485 IFFSIFNSLGIMPAVYAALLLPGSK----DQRLPAVPFIAGSFALGFFALAPYLALR 537

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig1806.4362.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig1806.4362.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D8LG28_ECTSI	7.900e-18	68.97	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5L8J8_9PHAE	3.190e-17	67.24	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6U8J661_9EUGL	1.650e-6	47.37	Hypothetical protein n=1 Tax=Eutreptiella gymnasti...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 66..66
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 36..46
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..35
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 47..65
None	No IPR available	TMHMM	TMhelix		coord: 9..31
None	No IPR available	TMHMM	TMhelix		coord: 46..65

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig1806	contig	H-paniculata_contig1806:21142..21339 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig1806.4362.1	mRNA_H-paniculata_contig1806.4362.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig1806 21142..21339 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig1806.4362.1 ID=prot_H-paniculata_contig1806.4362.1|Name=mRNA_H-paniculata_contig1806.4362.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
TRTDNGGNALFFAVFNGLGMIAFTLASTLIGGGSFGKGRQPVPPQPFVFG
AFGLGFFAAAPYLALR