mRNA_H-paniculata_contig1806.4362.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1806.4362.1
Unique NamemRNA_H-paniculata_contig1806.4362.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1806.4362.1 vs. uniprot
Match: D8LG28_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG28_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 7.900e-18
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:   25 ALFFAVFNGLGMIAFTLASTLIGGGSFGKGRQPVPPQPFVFGAFGLGFFAAAPYLALR 198
            A+F AVFN LG +   +AS L+GGGSFGKGRQPVP  PFVFGAF LGFF+  PYLA+R
Sbjct:  195 AIFTAVFNALGFLPGIMASMLVGGGSFGKGRQPVPAPPFVFGAFALGFFSLGPYLAVR 252
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BLAST of mRNA_H-paniculata_contig1806.4362.1 vs. uniprot
Match: A0A6H5L8J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8J8_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.190e-17
Identity = 39/58 (67.24%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:   25 ALFFAVFNGLGMIAFTLASTLIGGGSFGKGRQPVPPQPFVFGAFGLGFFAAAPYLALR 198
            A+F AVFN LG +    AS L+GGGSF KGRQPVP  PFVFGAF LGFF+  PYLA+R
Sbjct:    5 AIFTAVFNALGFLPAITASMLVGGGSFAKGRQPVPAPPFVFGAFALGFFSLGPYLAVR 62
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BLAST of mRNA_H-paniculata_contig1806.4362.1 vs. uniprot
Match: A0A6U8J661_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6U8J661_9EUGL)

HSP 1 Score: 53.1 bits (126), Expect = 1.650e-6
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:   28 LFFAVFNGLGMIAFTLASTLIGGGSFGKGRQPVPPQPFVFGAFGLGFFAAAPYLALR 198
            +FF++FN LG++    A+ L+ G       Q +P  PF+ G+F LGFFA APYLALR
Sbjct:  485 IFFSIFNSLGIMPAVYAALLLPGSK----DQRLPAVPFIAGSFALGFFALAPYLALR 537
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1806.4362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LG28_ECTSI7.900e-1868.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8J8_9PHAE3.190e-1767.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6U8J661_9EUGL1.650e-647.37Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1806contigH-paniculata_contig1806:21142..21339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_002190.1
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929406.7325988-CDS-H-paniculata_contig1806:21141..213391622929406.7325988-CDS-H-paniculata_contig1806:21141..21339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1806 21142..21339 -
1691480847.606361-CDS-H-paniculata_contig1806:21141..213391691480847.606361-CDS-H-paniculata_contig1806:21141..21339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1806 21142..21339 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1806.4362.1prot_H-paniculata_contig1806.4362.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1806 21142..21339 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1806.4362.1

>prot_H-paniculata_contig1806.4362.1 ID=prot_H-paniculata_contig1806.4362.1|Name=mRNA_H-paniculata_contig1806.4362.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
TRTDNGGNALFFAVFNGLGMIAFTLASTLIGGGSFGKGRQPVPPQPFVFG
AFGLGFFAAAPYLALR
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mRNA from alignment at H-paniculata_contig1806:21142..21339-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1806.4362.1 ID=mRNA_H-paniculata_contig1806.4362.1|Name=mRNA_H-paniculata_contig1806.4362.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig1806:21142..21339- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCCGGACAGATAACGGAGGAAACGCCCTTTTCTTCGCGGTGTTCAACGG
CTTGGGCATGATAGCGTTTACACTCGCGTCAACTCTGATCGGCGGAGGGT
CATTCGGAAAAGGTCGGCAACCCGTGCCCCCTCAACCGTTCGTGTTCGGA
GCTTTCGGGTTGGGATTTTTCGCCGCCGCACCGTACCTGGCACTGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1806:21142..21339-

>mRNA_H-paniculata_contig1806.4362.1 ID=mRNA_H-paniculata_contig1806.4362.1|Name=mRNA_H-paniculata_contig1806.4362.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig1806:21142..21339- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCCGGACAGATAACGGAGGAAACGCCCTTTTCTTCGCGGTGTTCAACGG
CTTGGGCATGATAGCGTTTACACTCGCGTCAACTCTGATCGGCGGAGGGT
CATTCGGAAAAGGTCGGCAACCCGTGCCCCCTCAACCGTTCGTGTTCGGA
GCTTTCGGGTTGGGATTTTTCGCCGCCGCACCGTACCTGGCACTGAGGAC
CCGGACAGATAACGGAGGAAACGCCCTTTTCTTCGCGGTGTTCAACGGCT
TGGGCATGATAGCGTTTACACTCGCGTCAACTCTGATCGGCGGAGGGTCA
TTCGGAAAAGGTCGGCAACCCGTGCCCCCTCAACCGTTCGTGTTCGGAGC
TTTCGGGTTGGGATTTTTCGCCGCCGCACCGTACCTGGCACTGAGG
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