|
|
Homology
BLAST of mRNA_H-paniculata_contig18054.4359.1 vs. uniprot
Match: A0A6H5KDH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDH8_9PHAE) HSP 1 Score: 196 bits (497), Expect = 9.370e-50 Identity = 143/348 (41.09%), Postives = 180/348 (51.72%), Query Frame = 3
Query: 264 ERTRVYHLPFSRDAASVVSRFLWEKLNDLKVKVVLRSFQSLASSSAAREAGLDPGKVLGALTPARRSMVSSARRSPAEVIAGLVVAIAEMFKMSVEDLSLFASTRPGAAAVVGGSADGM-----------------------------------------------PTASEQQQTHVQXXXXXXXHHAASVVRPQLVLLGDLSRAVGHGEAALLCASLLRDEEGAVGILRNASQTLRVGYGQFVSDLQGQLQKAHFKAREHTTGPSCVGSITSTPSPSSFAETKPQQLAGAGEQGMKAR----------TGSGGTPEGLVDEVMGGHVEAVALHGLQQFGGSCVRSLA 1136
E TR+YHLP +RDAASVVSRF+W++LN+L+VKVVLR+FQSLA S+AAREAGLD G+VL AL+PARRSMV S SP E AGL+V++AEMFK+SV L+ A+ PT++ +Q+ ++ VRPQL LLGDLSRAVGH EAAL+ ASLLRD GA IL +ASQ LRVGYG F+++L Q++ A TT +P KP + A E+G+ A G G P G A+AL GLQ+FGG CVR+LA
Sbjct: 628 ESTRLYHLPLTRDAASVVSRFMWKELNELRVKVVLRAFQSLACSTAAREAGLDAGQVLAALSPARRSMVGSLHGSPVETFAGLLVSLAEMFKVSVGTLAQLAAPAGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPTSAARQRA---------LSALSASVRPQLELLGDLSRAVGHVEAALVSASLLRDMAGATAILGSASQPLRVGYGHFIANLLEQVKVAR------TTAXXXXXXXXXXQAP-----PKPADIRAAAERGVGAGQNPPGSSDRLNGDAGVPAAAAPVSGGAAAGAMALVGLQRFGGMCVRALA 955
BLAST of mRNA_H-paniculata_contig18054.4359.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI) HSP 1 Score: 135 bits (340), Expect = 2.270e-29 Identity = 90/175 (51.43%), Postives = 109/175 (62.29%), Query Frame = 3
Query: 6 TLFSRRSALRLRALRRPGRLGYSGNTDTVEQDEGGFPGQSAAGDTNPPASQAGVSAAAEPGRNDDCPNSAQASRSAGSAATQRTESERTRVYHLPFSRDAASVVSRFLWEKLNDLKVKVVLRSFQSLASSSAAREAGLDPGKVLGALTPARRSMVSSARRSPAEVIAGLVVAIAE 530
T F R SALRLRALRRPGRLG + D D+ GD +P ++ G QR E E TR+YHLP +RDAASVVSRF+W++LN+L+VKVVLR+FQSLA S+AAREAGLD G+VL AL+PARRSMV S SP E AGL+V++AE
Sbjct: 2418 THFGRTSALRLRALRRPGRLG---DADADSADD--------TGDESPFPTEGGEEXXXXXXXXXXX------------MXXQRPEVESTRLYHLPLTRDAASVVSRFMWKELNELRVKVVLRAFQSLACSTAAREAGLDAGQVLAALSPARRSMVGSLHGSPVETFAGLLVSLAE 2569
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 104.8 |
| Seed ortholog evalue | 5.6e-20 |
| Seed eggNOG ortholog | 2880.D8LB77 |
| KEGG ko | ko:K20476 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | Rab guanyl-nucleotide exchange factor activity |
| EggNOG OGs | KOG2006@1,KOG2006@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko04131 |
| Exons | 6 |
| Model size | 1775 |
| Cds size | 681 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18054.4359.1 >prot_H-paniculata_contig18054.4359.1 ID=prot_H-paniculata_contig18054.4359.1|Name=mRNA_H-paniculata_contig18054.4359.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=227bp
MVSSARRSPAEVIAGLVVAIAEMFKMSVEDLSLFASTRPGAAAVVGGSAD
GMPTASEQQQTHVQAAAAAVSHHAASVVRPQLVLLGDLSRAVGHGEAALL
CASLLRDEEGAVGILRNASQTLRVGYGQFVSDLQGQLQKAHFKAREHTTG
PSCVGSITSTPSPSSFAETKPQQLAGAGEQGMKARTGSGGTPEGLVDEVM
GGHVEAVALHGLQQFGGSCVRSLASF* back to topmRNA from alignment at H-paniculata_contig18054:654..5290+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig18054.4359.1 ID=mRNA_H-paniculata_contig18054.4359.1|Name=mRNA_H-paniculata_contig18054.4359.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4637bp|location=Sequence derived from alignment at H-paniculata_contig18054:654..5290+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAATACGCTTTTTAGCAGGAGGTCTGCGCTCCGGCTACGAGCGCTCCGA
AGGTGTCTGGGTTTGGGGTTGCTGTGCTGTGTCGGCGTGTTGTTGTGTAG
AGTTTCGGGAAGACGGTACCGTCAACGCCAAGATGATTCAGGAGTCTTGT
CATGTGCCTGTGCTTTGTTTTGCACCATGTAAGCACCAGCACCGGTACCA
CTGTTGGTTGCCTGCACATGATGTATCTATGAAATGATCGCTGGTATTTC
TTTAACATGGCGACCGCTGTTTAGCGTGCCGAATTGAGTCGACCTTTGTG
CAAGAAAAAAAAAGAATTTCACTTTTGAGAAAAAACACGACATCAAAGAG
TAGCTGCATAGCTGTGGGTGAAAACAAACGTGCTAACATTTGGTTCCTAA
TTCGCGCATTTTCTCTTGCACCTTTTGATACAAATTTGCTGATAAGTGTA
TACCGGTACAAGTAAAGTTTTAAAGTCAGCTGTATATCCTCAACATGGAC
ACAATGGAGTTATTATATGAGCTTCAGAGCCATAGTTCAACTAACTGTGG
CATTCCAGTTAGTGAAATGAGCCCCCCTCTGCCCCCCCGTCCCCGTCCCC
CTCCCTCCGAAAGGCATTCACTGAATTGATGTTCTCGCTCCCTTATCCAC
TATCTTGTGTTTTGCGTTGTCTTCTGCCGCGCTGTCCTTGCCAAAAAGGC
CGGGTCGTTTGGGTTATTCTGGCAATACTGATACCGTGGAACAGGACGAG
GGTGGCTTCCCAGGTCAATCGGCAGCCGGGGACACTAACCCACCCGCCTC
TCAGGCGGGGGTGTCGGCGGCCGCTGAGCCGGGTAGGAATGACGATTGCC
CAAATAGCGCCCAGGCGTCTCGTTCTGCCGGTTCTGCGGCGACTCAGGTG
CGCGCGCACGCGCGCGCGTGTGTATATTTATTTCTTCTTCACCTTCTGTT
ATGTTTCAAGTGTCGTAGTCTAAACTGTTATTTTAGCTTTCAGTCGAAGG
AAGCATACGTTCGCCCTGCCTAGTATGGGTAAGTCTTTCATTTGTCTTCA
AAATTGCTTTCAGCAATGCAGCAGTATTCGAATATCACTTTCGACGCGCC
CAACACGTCCTGTGCATGTACGGTATGCGTGAGGGCTTTTGTGAATAAGT
AGGACACGAACCTCTATCTATTCGCCCTCGGCTTGTCCGCATCTTCCCTG
GAATAAATGACGAACAAAGGACCACCGCCCGCTGGTGTGTATTTGTAATT
TGAAGCGGACGGAGAGCGAGCGCACTCGTGTGTATCACCTCCCGTTCTCT
CGAGACGCTGCATCCGTGGTATCGCGTTTCCTCTGGGAGAAGCTCAACGA
CCTCAAGGTCAAAGTTGTCCTCAGGTCGTTCCAGGTGGGTGTGAATTATG
GAGTGTGTGTAATTATTCTCTCTCTCTTTGTTCGTGACTTGGAGAAGGCC
CTCTGTGTTTTTTTTCTCGTTGTAGCAGTTATTGCCGAGAAAACCCGGCA
TCGACACTAACTGTTCTTGCCAACCTGGTACGTCGTTTATAATACCTTGG
ATCGTGATCTTTTGGGGTGGTGTCCAGAGTGTAGTGTTTTTTTGCTGTGT
GTTTTTGACGTTTACGTATGTATGAAGTTTGCTTCTGCAGCGTTTAAGAT
CTCTACACTTCGTCGCGGTGAATAGATTTTGAAGAGGGTGATACACTATT
AATGCCCCCCCGCTCCAAGTCGCCTGATGCGTCGAGCTCTAGGCTGTGCT
ATAGTCAGTAATATAGTTTTCGAGCACATTTCAAGATTTCGTACTAGCCT
CTTCCTTGTCTAGGTGATGGTGTTCGCTTTCAGCATACAAGGGACGAGAG
GTTGTCAACGGCTGCTAATCATGAAACGCTTCGAAGTAATTGATCCATGA
CAAACTAGACCAATGATCCCATGGTACGCACAAGGGCTCGAGACAAGATA
GTGTACAGTGGCCACTCTTTCATCTAGAAGATGAAGAGGTTTTCACTCTG
CTGATGAAAACGGGTACTTCTTTTTATTACACGCGTTCAAGAGGGATAGG
AGTCCGACAGCTTTCGGCCGGCATCGGTACCAATCATTCATGTATAGCTA
CAATATGTTTCATCTCTCCCAAGCACTTGGACACTTGAAAGCACCAACCC
ATACCACGCTACTCTTTGTTGTGTTCTTGCGCTTGCAAAATAACGGTTTA
TTGCCAAACCCAAACTAGTCGCTGGCATCTAGCTCTGCCGCTCGCGAGGC
CGGGCTGGACCCGGGCAAGGTATTGGGAGCGCTGACGCCCGCCCGGAGGT
CCATGGTCAGCAGCGCGCGACGCTCGCCTGCGGAGGTCATCGCAGGATTG
GTAGTGGCTATTGCGGAGGTGAGTGGAGTATTAACAATGACACGGCGGGG
GCAGGGAACGCTCACGTCGTTACTGACGAAAAGATGTCTCTTCGTGTTGT
CTGCTGTTCGCGTTTGTCGTGGTTGTATGCCAGCTATTTTTTTTTTTTTT
TTTCACATCGCTAACCGTTGGTTTACATGTGTCGGAAGAAGAGGCTCCTG
AATTTTCCTCCTCTCCCCCAACCTTAGTTCACTCTGCTGTCGGTGTTCAT
TCTTATATGACGACATCCCGACAGATGTTCAAGATGTCGGTGGAAGATTT
GTCCCTTTTTGCTTCTACTCGGCCTGGTGCCGCGGCCGTGGTCGGTGGGT
CGGCGGATGGTATGCCCACGGCGTCCGAGCAACAGCAAACTCACGTTCAG
GCAGCAGCAGCGGCGGTATCCCACCATGCCGCGTCTGTTGTGCGACCGCA
GTTGGTGCTTCTCGGGGATTTGAGCCGTGCTGTAGGCCACGGCGAGGCCG
CGTTGTTGTGCGCGTCGCTTTTGAGAGATGAGGAAGGAGCCGTGGGTATT
CTAAGGTGAGTGTTTTGTGCTTGTGGGGGAGAACTAAGAAGGGGGTGGGA
CGTACTCATGTTTTTGCATACCGTAGTTGTTGCACCATTGACTACTTGTC
TTTGGGAGGACGGAGGTAGGGTGAAGAACGCGGGAAGATCAAAATGCGGA
GGGGGTGATGACGCTCTAGCCGTTTTGTGTTTCGTGGGGCGTGAACGCAA
TGAATACGCTCGTTGTTTTCCCTTATGTTTCCACTCCATGAAGACTGATA
TTCGATGAGGTCGGATTGGTTTCACACAGCTGGGTTTGGCTCTCTGCCTT
TGATATCTGAGGATTTGTAACGAGAGGCTCGATGCACTGCCTAAGATTGA
CTTTTTCATCCTCGCTGTTGTATAAGTTGGGTGTTGATGGAATAGTGCGT
ACGGAAGCGGTAGAATGAGAGGGAAGAAATGCGAAAATCGTCATTTATCG
TCGTTGATTTCCGGGTATGAGCGCTCGTATGCGTATTCTGTGTTGGTCGT
ACCTTGATTTTCTCCGTCATGAAATGGGAATTGCGCACTACAGTGAAACG
ACACTGAATGGCTTGCGAATATACATGTCGAATATGCATGTATATCTGCG
GACTTGCTCTCCCACTACAGATGTTGTAGTACCACAGCCTACTATAATAT
ATAACAAGCGGAATATGCCTTTCACTCACCCGCCGAACGTCCCTCGCCTT
TCCCATACTTCCCTGCCGCATTGTTCCAATTTTAATGCCACGGTATGGTG
TTTTTGTTTGTCACTACTTTTAGAAACGCCTCCCAGACGTTACGGGTGGG
GTACGGCCAGTTCGTGTCTGATCTCCAGGGGCAATTGCAGAAAGCACATT
TCAAAGCAAGAGAACACACGACCGGACCATCGTGCGTGGGGTCTATTACG
TCGACCCCGTCACCATCATCGTTTGCAGAGACAAAACCACAGCAGCTAGC
AGGCGCAGGCGAGCAAGGCATGAAAGCACGGACGGGGAGCGGGGGAACGC
CCGAGGGGTTGGTTGACGAAGTGATGGGGGGACACGTGGAAGCTGTCGCC
CTCCACGGTTTGCAGCAATTTGGCGGGAGCTGTGTCAGGAGTCTTGCGTC
TTTCTGAATTGTCCTTCCCCTCTGATCGATGTTTACTAATGCTCCTGATA
TGTACATGTATCTTTGAGATACAAGCTACCATACCCCCCCCCGCCTCCTC
CCCACACACATCTGGGTATTCTTGATCCATTTTTGCGTGAGATATCACGG
TCAGCGAATATTGTGTGGTGTGACGAAGTTAGTTGTACTTGCTGACTTGG
TTAAAGGTTGTGTGTTATTTTGTGGATCTCGGTGCCACCTCTGTTGTACT
CAGTACACACCGATTTGAAAACTTCCCCCGTCACAGGAGACTTCGGAAGT
GTAAGACATAATATTTTGTCATGATCCATAGATGGAAGATTTTTGTCGCA
CTACCCAGGACTGCTTATGAACTCTGGATAACAGTGGATCAGGAGATGGT
TGTGGAGAAGTCTCACGCTGTCCTTGTAAATTAGTTTTAGTGTCATATAA
AGTGCCAGAGGCGAAAGATCGGTGATGCCGTACCTGCGTCCAATATATAT
ATTTTAGCCCCCGGAAGGCTGAGGTAAAAAACCTTTACCGATGCTTCCAT
ACTCAAGTATTTTATCAAAGTACTTCTACATTTCCTTTAACAGAACAAAG
TTATTTATTCCTCTGCGGGGTAGGCGCCACCCCGGTT back to topCoding sequence (CDS) from alignment at H-paniculata_contig18054:654..5290+ >mRNA_H-paniculata_contig18054.4359.1 ID=mRNA_H-paniculata_contig18054.4359.1|Name=mRNA_H-paniculata_contig18054.4359.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1362bp|location=Sequence derived from alignment at H-paniculata_contig18054:654..5290+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCAGCAGCGCGCGACGCTCGCCTGCGGAGGTCATCGCAGGATTGGT
AGTGGCTATTGCGGAGATGGTCAGCAGCGCGCGACGCTCGCCTGCGGAGG
TCATCGCAGGATTGGTAGTGGCTATTGCGGAGATGTTCAAGATGTCGGTG
GAAGATTTGTCCCTTTTTGCTTCTACTCGGCCTGGTGCCGCGGCCGTGGT
CGGTGGGTCGGCGGATGGTATGCCCACGGCGTCCGAGCAACAGCAAACTC
ACGTTCAGGCAGCAGCAGCGGCGGTATCCCACCATGCCGCGTCTGTTGTG
CGACCGCAGTTGGTGCTTCTCGGGGATTTGAGCCGTGCTGTAGGCCACGG
CGAGGCCGCGTTGTTGTGCGCGTCGCTTTTGAGAGATGAGGAAGGAGCCG
TGGGTATTCTAAGATGTTCAAGATGTCGGTGGAAGATTTGTCCCTTTTTG
CTTCTACTCGGCCTGGTGCCGCGGCCGTGGTCGGTGGGTCGGCGGATGGT
ATGCCCACGGCGTCCGAGCAACAGCAAACTCACGTTCAGGCAGCAGCAGC
GGCGGTATCCCACCATGCCGCGTCTGTTGTGCGACCGCAGTTGGTGCTTC
TCGGGGATTTGAGCCGTGCTGTAGGCCACGGCGAGGCCGCGTTGTTGTGC
GCGTCGCTTTTGAGAGATGAGGAAGGAGCCGTGGGTATTCTAAGAAACGC
CTCCCAGACGTTACGGGTGGGGTACGGCCAGTTCGTGTCTGATCTCCAGG
GGCAATTGCAGAAAGCACATTTCAAAGCAAGAGAACACACGACCGGACCA
TCGTGCGTGGGGTCTATTACGTCGACCCCGTCACCATCATCGTTTGCAGA
GACAAAACCACAGCAGCTAGCAGGCGCAGGCGAGCAAGGCATGAAAGCAC
GGACGGGGAGCGGGGGAACGCCCGAGGGGTTGGTTGACGAAGTGATGGGG
GGACACGTGGAAGCTGTCGCCCTCCACGGTTTGCAGCAATTTGGCGGGAG
CTGTGTCAGGAGTCTTGCGTCTTTCTGAAAACGCCTCCCAGACGTTACGG
GTGGGGTACGGCCAGTTCGTGTCTGATCTCCAGGGGCAATTGCAGAAAGC
ACATTTCAAAGCAAGAGAACACACGACCGGACCATCGTGCGTGGGGTCTA
TTACGTCGACCCCGTCACCATCATCGTTTGCAGAGACAAAACCACAGCAG
CTAGCAGGCGCAGGCGAGCAAGGCATGAAAGCACGGACGGGGAGCGGGGG
AACGCCCGAGGGGTTGGTTGACGAAGTGATGGGGGGACACGTGGAAGCTG
TCGCCCTCCACGGTTTGCAGCAATTTGGCGGGAGCTGTGTCAGGAGTCTT
GCGTCTTTCTGA back to top
|