mRNA_H-paniculata_contig1805.4357.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1805.4357.1
Unique NamemRNA_H-paniculata_contig1805.4357.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1805.4357.1 vs. uniprot
Match: D8LQ19_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ19_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 3.260e-21
Identity = 123/363 (33.88%), Postives = 161/363 (44.35%), Query Frame = 1 
Query:   31 FRDFERSTAESTRMALVESD-LLLCKADDS-NTERQDNPEDDSSTTTNDKYRDKDNNCDSSPNAMVMPRHXXXXXXXXXXXXXXRRFVPGDPFANEEADIGAWADHFTYLSVVPAASWTPTMTTEPTTTGTAAVGTVSLVEHGRNNEGPRWQDECCDAPPIGGVSSCSPGSASGNSAYCVLPQGASVARGDGGNVIGNVLVAGEVVGGGDDPVVVGRAVRRGHENEEEQIGELEAEGVLASHGVYEEYLAYDCRPP------SPS-TSENNGDENNAVQSNISGAGGNEGAGGLLLTANAKTKRS---QNYDQSADTNLVDPEEREEVRKQSLLFSPQQREVREEMMDRLFHEIWRRITPDLL 1083
             R+FERS+AE+TR AL+++D LLLC+   S N    DN                    D    + + P  XXX            R+VPGDPFANEEAD+GAWA HFTYLSVVP          E  +   A  G   L+E G   E P  +D        GGV++       G+    + P+ A+                           + GR +    + EE          V ASHGVYEEYLAYDCRPP      SP   +   G+E+  + +  SGA       G++  AN+   +     N   S    L         R  + L +PQ RE+R+E+MDRLF E+W RITPDLL
Sbjct:   57 MREFERSSAENTREALLDNDALLLCEPPASANAGSADN--------------------DGRQTSPLSPXXXXXVPL---------RYVPGDPFANEEADVGAWAKHFTYLSVVPTERGEGG-DAEKRSNDNAGGG---LLERGPVAEPPPVRDVMETDEETGGVAAVE-----GSRIQDLTPEEAAAE-------------------------LAGRRLEEMPQGEE----------VFASHGVYEEYLAYDCRPPGFDDVTSPGGETMGPGEEDPRLAAKGSGAWA---VTGVVPNANSAVGQGAWVSNNAASEPPALGASTTGGSHRVVARLDTPQ-RELRQEIMDRLFDELWERITPDLL 342
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1805.4357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ19_ECTSI3.260e-2133.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1805contigH-paniculata_contig1805:17936..21796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_001280.1
Exons3
Model size1349
Cds size1068
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1805.4357.1prot_H-paniculata_contig1805.4357.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1805 18005..21584 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929406.117699-UTR-H-paniculata_contig1805:17935..180041622929406.117699-UTR-H-paniculata_contig1805:17935..18004Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1805 17936..18004 +
1691480847.2700458-UTR-H-paniculata_contig1805:17935..180041691480847.2700458-UTR-H-paniculata_contig1805:17935..18004Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1805 17936..18004 +
1622929406.1882067-UTR-H-paniculata_contig1805:21584..217961622929406.1882067-UTR-H-paniculata_contig1805:21584..21796Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1805 21585..21796 +
1691480847.3124838-UTR-H-paniculata_contig1805:21584..217961691480847.3124838-UTR-H-paniculata_contig1805:21584..21796Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1805 21585..21796 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929406.1341805-CDS-H-paniculata_contig1805:18004..180401622929406.1341805-CDS-H-paniculata_contig1805:18004..18040Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1805 18005..18040 +
1691480847.279761-CDS-H-paniculata_contig1805:18004..180401691480847.279761-CDS-H-paniculata_contig1805:18004..18040Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1805 18005..18040 +
1622929406.148962-CDS-H-paniculata_contig1805:19595..201781622929406.148962-CDS-H-paniculata_contig1805:19595..20178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1805 19596..20178 +
1691480847.2882774-CDS-H-paniculata_contig1805:19595..201781691480847.2882774-CDS-H-paniculata_contig1805:19595..20178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1805 19596..20178 +
1622929406.1625562-CDS-H-paniculata_contig1805:21135..215841622929406.1625562-CDS-H-paniculata_contig1805:21135..21584Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1805 21136..21584 +
1691480847.2975261-CDS-H-paniculata_contig1805:21135..215841691480847.2975261-CDS-H-paniculata_contig1805:21135..21584Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1805 21136..21584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1805.4357.1

>prot_H-paniculata_contig1805.4357.1 ID=prot_H-paniculata_contig1805.4357.1|Name=mRNA_H-paniculata_contig1805.4357.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=356bp
MALVESDLLLCKADDSNTERQDNPEDDSSTTTNDKYRDKDNNCDSSPNAM
VMPRHRHDQQQNQEQRQQQRRFVPGDPFANEEADIGAWADHFTYLSVVPA
ASWTPTMTTEPTTTGTAAVGTVSLVEHGRNNEGPRWQDECCDAPPIGGVS
SCSPGSASGNSAYCVLPQGASVARGDGGNVIGNVLVAGEVVGGGDDPVVV
GRAVRRGHENEEEQIGELEAEGVLASHGVYEEYLAYDCRPPSPSTSENNG
DENNAVQSNISGAGGNEGAGGLLLTANAKTKRSQNYDQSADTNLVDPEER
EEVRKQSLLFSPQQREVREEMMDRLFHEIWRRITPDLLAAAENSNSSNAR
VVKTG*
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mRNA from alignment at H-paniculata_contig1805:17936..21796+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1805.4357.1 ID=mRNA_H-paniculata_contig1805.4357.1|Name=mRNA_H-paniculata_contig1805.4357.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3861bp|location=Sequence derived from alignment at H-paniculata_contig1805:17936..21796+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGAGGGAAGGGGGGTCGGGGCCGGAGGGTTTCGTGACTTCGAGAGGAG
CACGGCGGAGAGCACGCGCATGGCACTTGTCGAGAGTGACCTGCTGCTTT
GCAAGGTCTGTCATGCGGCGATGCCCCGCAGCATCCAATGTATAACCGTC
TAGTTTTTTTTTGCCCCATCCCTCTAGCGCTTCTAGCGTCGAGCGTTTTT
TCTTCTTGAAGTGGGGCTACTAACGAACTCCCAAAATTTTCACAATCTTG
CCTCAAATCAGTTAGTGTTATACTCGTAGTAGTCGTTTTGGTCCATGCTG
CAATATGGTCCACGTATGAGTTTATTTGTGACTCCCTCTGTCCATACGAT
GAATGAAATATTGCCGACTATGATCCTAATTTTTTTTCTTCCTTTAAGTA
CGTCCAGACAGATGCACATCGAACACTAGTAGGTATAAATCCGACACAAT
GAAATGAAAACGATACAAGCGACGAACTGATTGGCTTCTATTTCCGGCCA
GATACACAGTAAGAGAAGGTTAACTGGCGATTCTCGTTCACGAGACTTGA
AACTGGACGGCGTTCATGATTCCGTTTCATTATGTATGGTGTCTTCTTTC
GATTTTGTGGGGCGGTTGATAGCACGCCGCTTTAACTGCGTATGCGGGGG
CAACAGCAGCAGAGGCATACTCTGGAATAGGATAATAGATGCACAATTGT
ATTGGAGCAACGGGAGCTAAAGCTGACGGTCACCGAACTGTGCTGTAGCT
GCTGTGTGGTGCTGATCCCACCCCCAAGTGTCAAGCGTACAAAAACATTT
GTGCACCATGTCACGGATGGCATGTATATGTGTATGTCCCTACAGGCAGT
CGAGCAGAGCAATGTCCAGAGAAACAACAGAAAAAAAGTGTGATCTGTCG
GCGTCTCTCTGTGTACACCTGTTTGCCTGTTTTTCTCTGTTCTGCCTTCC
TTCTGTTCAGTTCGGTTTTATCCCCTCCAGGGTGGTTTTTCATCGTTCAG
ATACTCGGTCAGAGGCTAGAATACATGCCCAGTACCAACCAGTCTAGTTA
GAGGTCGGCTCGAGTAGGCGCACGAGAAGGGGCGGTTTTTCGTTTGACCA
GGTATTCTGTGTCAGGAGGCAGCTAGGGCGATACATGAAACAATTACATT
GTAAAAATATGACAAGAGTAAATATGACTCTCGGACTATTTGTAGCAGCG
CATAGGAGTTACCAGAGGAAGGGAAGGCGGCATCGCAATCCGCAAATACC
CCCAAAACGCCCATTCGATACCGTATAATTCCAGTATCACATTGTTATAA
CAGGCTATCTTGAGCAGGCTCACGTAATACGTCGGTTGTTCGTGTGATTG
AGTAAACTACTCGAGGGGATATTTACAAACATGAAGCTCCAGGCTTCAAA
GTTCGAATCGAAAGGGTAGGCACGTTGCCCTCTATATGCAAGACAACATT
GGTGTATTTTACCCGCGAAAGGATTCTTCCGCTGGGAACGAGTTACCCCG
CAACCTTATACACTGAAAAATTCAGATGCTCTCCGTTTGGTTATATATTT
GATTGATCTGCTCTGGCGCATCGTTAAAAATACCTGAACACGTCTCAATA
TTTTCGTCTCAAGTGTCCCCCCTTCTCGTGCCCACCTACTCCTAAACGCT
TTCAATCAAGGCCGACGACTCGAACACAGAACGCCAAGATAACCCCGAAG
ACGATAGCTCCACTACCACCAATGACAAGTACAGGGACAAGGATAACAAC
TGCGACTCCTCTCCCAACGCCATGGTCATGCCCCGACATCGCCATGATCA
ACAACAAAATCAAGAACAACGACAACAACAGAGGCGCTTCGTTCCCGGAG
ACCCATTTGCTAACGAAGAGGCTGACATTGGCGCGTGGGCCGATCACTTC
ACCTACTTGTCGGTGGTTCCCGCCGCAAGCTGGACGCCTACAATGACCAC
AGAGCCCACGACGACTGGAACAGCGGCGGTGGGTACAGTATCGCTTGTGG
AACATGGCAGAAACAACGAGGGGCCGCGGTGGCAGGACGAGTGTTGCGAC
GCGCCTCCGATAGGTGGTGTGAGCTCGTGCTCGCCCGGGAGTGCCAGCGG
TAATAGTGCGTACTGCGTTCTCCCTCAAGGTGCATCCGTCGCGAGAGGTG
ATGGTGGGAACGTCATTGGCAACGTTCTTGTTGCAGGGGAAGTTGTTGGT
GGTGGAGATGATCCGGTTGTGGTCGGGCGCGCGGTTCGAAGAGGTACGTG
CAACAGTTGCCCGTGTAGGAGATATGGGTGGGGGGGATAGGGCGACGCCA
ACCATGAGACAGTGACAGTGGTTTCAAGTGATACAGGGAGGAGAGTGCTG
GTTGATCCATCGGGTAGTCGACCGAGTGATGTTGTCGCATTACTTGAAGT
CTTTTTCTGTGTCCGATAATCCAATTACTTTTTCCCCTACAAAGTTCAAC
GTGACAAAAGCGCGTAGGCAGGACAAACAAAAAAAAATGTAGCTGTAACG
TCGGCAATGGGTTAGAAGCCAACGTGTCCACAGTGCACCATCCTTGGGGT
TATTTGTTGAGTTTTCGCAATGAAATGACACGAATATGGTATTGCGGACC
TATGGGCGGTACAACGTTCGAATGGTCGCCGTTCCGATGTCTCATCATCG
TGGAGTTGTTCACAGCACGTATTTTGTGCTTTGCAAGAAATTATAATGGC
GTGCTGAAAACGCCGTGCCTGTTAGCGAGGATACTATTAAAGTGGCCCAT
TGTAATGACCGAATTTGTGCCAAGAACAAAACTGAGAGAAGTAGCCAGGT
TTAATTTGATCTACCCAACTGCGCCATGGACATCTCGTGCTCTTGTAATG
GTGTCTGTAGCTGGCTTTGAGGTTTCTAGTGATAGCGCACAAAACAAATC
GAGAAGAGTAATTTTTCACTTTTTCCCAGTTTTCTAAGTTTTATTTTCTG
CATGAATTTAGTCCTCATTACAATGCGTCACCGTAATAGTCGTATATCCC
TTGCCGTACACACACACACACACACACACACACACACACATATGCATCGA
TCGTGAAGCGCTGAAAGACACTGCAAAAACAAGGAAACATTAATTTCAAA
GGACGAGATTATTGATTTTCATATGATAAAGTCCCCATTTTGCTCACGGC
TGAACATGTCCCCGTTCCTACTTCCTTTTTCATATCATGTGTTCAAGCAG
GACACGAGAATGAAGAAGAGCAGATTGGCGAACTTGAGGCCGAGGGTGTG
CTAGCGAGCCACGGTGTATACGAAGAGTACCTGGCGTACGACTGCAGGCC
ACCATCGCCGAGCACGAGCGAAAACAATGGCGATGAGAACAACGCCGTCC
AATCCAACATAAGCGGTGCAGGAGGAAATGAAGGGGCCGGAGGACTGTTG
TTGACAGCAAACGCCAAGACGAAACGCTCCCAAAATTATGATCAAAGCGC
CGACACTAATTTAGTTGATCCAGAGGAGCGGGAGGAAGTAAGGAAACAAA
GTCTACTCTTCTCACCACAACAGCGCGAAGTACGGGAAGAAATGATGGAT
CGGTTGTTCCACGAGATATGGAGGCGTATCACTCCAGACTTGCTAGCGGC
GGCTGAGAATTCTAATAGCAGCAACGCACGGGTGGTGAAGACAGGGTAGG
GGTGAAGCTCCAGAAGTAATTATGGCGGGGTAGTGAAGAACAAGATTAAC
GCAACGTTCCAAGCTACTATTTTTATACCGCTGACCGCGGGAAGTTTGGC
ATCTTCGCTGCATGATATTCTGATTTATTTTTTGGGGGGGGAGGGGTAAT
CAAATGAAACCTGTGTTGTGATACGAACGAAAGCGTACTCGACAACCACA
ATATATGGACG
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Coding sequence (CDS) from alignment at H-paniculata_contig1805:17936..21796+

>mRNA_H-paniculata_contig1805.4357.1 ID=mRNA_H-paniculata_contig1805.4357.1|Name=mRNA_H-paniculata_contig1805.4357.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2136bp|location=Sequence derived from alignment at H-paniculata_contig1805:17936..21796+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCACTTGTCGAGAGTGACCTGCTGCTTTGCAAGATGGCACTTGTCGA
GAGTGACCTGCTGCTTTGCAAGGCCGACGACTCGAACACAGAACGCCAAG
ATAACCCCGAAGACGATAGCTCCACTACCACCAATGACAAGTACAGGGAC
AAGGATAACAACTGCGACTCCTCTCCCAACGCCATGGTCATGCCCCGACA
TCGCCATGATCAACAACAAAATCAAGAACAACGACAACAACAGAGGCGCT
TCGTTCCCGGAGACCCATTTGCTAACGAAGAGGCTGACATTGGCGCGTGG
GCCGATCACTTCACCTACTTGTCGGTGGTTCCCGCCGCAAGCTGGACGCC
TACAATGACCACAGAGCCCACGACGACTGGAACAGCGGCGGTGGGTACAG
TATCGCTTGTGGAACATGGCAGAAACAACGAGGGGCCGCGGTGGCAGGAC
GAGTGTTGCGACGCGCCTCCGATAGGTGGTGTGAGCTCGTGCTCGCCCGG
GAGTGCCAGCGGTAATAGTGCGTACTGCGTTCTCCCTCAAGGTGCATCCG
TCGCGAGAGGTGATGGTGGGAACGTCATTGGCAACGTTCTTGTTGCAGGG
GAAGTTGTTGGTGGTGGAGATGATCCGGTTGTGGTCGGGCGCGCGGTTCG
AAGAGGCCGACGACTCGAACACAGAACGCCAAGATAACCCCGAAGACGAT
AGCTCCACTACCACCAATGACAAGTACAGGGACAAGGATAACAACTGCGA
CTCCTCTCCCAACGCCATGGTCATGCCCCGACATCGCCATGATCAACAAC
AAAATCAAGAACAACGACAACAACAGAGGCGCTTCGTTCCCGGAGACCCA
TTTGCTAACGAAGAGGCTGACATTGGCGCGTGGGCCGATCACTTCACCTA
CTTGTCGGTGGTTCCCGCCGCAAGCTGGACGCCTACAATGACCACAGAGC
CCACGACGACTGGAACAGCGGCGGTGGGTACAGTATCGCTTGTGGAACAT
GGCAGAAACAACGAGGGGCCGCGGTGGCAGGACGAGTGTTGCGACGCGCC
TCCGATAGGTGGTGTGAGCTCGTGCTCGCCCGGGAGTGCCAGCGGTAATA
GTGCGTACTGCGTTCTCCCTCAAGGTGCATCCGTCGCGAGAGGTGATGGT
GGGAACGTCATTGGCAACGTTCTTGTTGCAGGGGAAGTTGTTGGTGGTGG
AGATGATCCGGTTGTGGTCGGGCGCGCGGTTCGAAGAGGACACGAGAATG
AAGAAGAGCAGATTGGCGAACTTGAGGCCGAGGGTGTGCTAGCGAGCCAC
GGTGTATACGAAGAGTACCTGGCGTACGACTGCAGGCCACCATCGCCGAG
CACGAGCGAAAACAATGGCGATGAGAACAACGCCGTCCAATCCAACATAA
GCGGTGCAGGAGGAAATGAAGGGGCCGGAGGACTGTTGTTGACAGCAAAC
GCCAAGACGAAACGCTCCCAAAATTATGATCAAAGCGCCGACACTAATTT
AGTTGATCCAGAGGAGCGGGAGGAAGTAAGGAAACAAAGTCTACTCTTCT
CACCACAACAGCGCGAAGTACGGGAAGAAATGATGGATCGGTTGTTCCAC
GAGATATGGAGGCGTATCACTCCAGACTTGCTAGCGGCGGCTGAGAATTC
TAATAGCAGCAACGCACGGGTGGTGAAGACAGGGTAGGACACGAGAATGA
AGAAGAGCAGATTGGCGAACTTGAGGCCGAGGGTGTGCTAGCGAGCCACG
GTGTATACGAAGAGTACCTGGCGTACGACTGCAGGCCACCATCGCCGAGC
ACGAGCGAAAACAATGGCGATGAGAACAACGCCGTCCAATCCAACATAAG
CGGTGCAGGAGGAAATGAAGGGGCCGGAGGACTGTTGTTGACAGCAAACG
CCAAGACGAAACGCTCCCAAAATTATGATCAAAGCGCCGACACTAATTTA
GTTGATCCAGAGGAGCGGGAGGAAGTAAGGAAACAAAGTCTACTCTTCTC
ACCACAACAGCGCGAAGTACGGGAAGAAATGATGGATCGGTTGTTCCACG
AGATATGGAGGCGTATCACTCCAGACTTGCTAGCGGCGGCTGAGAATTCT
AATAGCAGCAACGCACGGGTGGTGAAGACAGGGTAG
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