prot_H-paniculata_contig18042.4356.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig18042.4356.1
Unique Name	prot_H-paniculata_contig18042.4356.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	139

Homology

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BLAST of mRNA_H-paniculata_contig18042.4356.1 vs. uniprot
Match: D7FSG0_ECTSI (Terminal deoxycytidyl transferase rev1, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSG0_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 2.180e-56
Identity = 92/118 (77.97%), Postives = 103/118 (87.29%), Query Frame = 0

Query:   14 QDLPGVGWKLRRRLNEENMNICSDLWPLPVARLQKGFGLGEKTGQALWEACRGIDNRPVQAPPDRKSIGAEVNYGVRFDTQAQANDFVSKLAVELSSRMDVEEVVGRALTLKIMKQRD 131
            QDLPGVGWKLR+RLNE+ +  CSDLWPL +  +QKG  LGEKTG+ALWEACRGID RPVQAPPDRKSIGAEVNYGVRFDTQ QA+ F+S+LAVELS RM  E V+GRALTLK+MKQRD
Sbjct:  564 QDLPGVGWKLRKRLNEQGLTSCSDLWPLSLTHMQKGLALGEKTGRALWEACRGIDKRPVQAPPDRKSIGAEVNYGVRFDTQTQADGFLSELAVELSRRMLTEGVLGRALTLKVMKQRD 681

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BLAST of mRNA_H-paniculata_contig18042.4356.1 vs. uniprot
Match: A0A6H5L1W8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1W8_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 5.570e-56
Identity = 93/118 (78.81%), Postives = 103/118 (87.29%), Query Frame = 0

Query:   14 QDLPGVGWKLRRRLNEENMNICSDLWPLPVARLQKGFGLGEKTGQALWEACRGIDNRPVQAPPDRKSIGAEVNYGVRFDTQAQANDFVSKLAVELSSRMDVEEVVGRALTLKIMKQRD 131
            QDLPGVGWKLR+RLNE  +  CSDLWPL +  +QKG GLGEKTG+ALWEACRGID RPVQAPPDRKSIGAEVNYGVRFDTQAQA+ F+S+LA ELS RM  E V+G+ALTLKIMKQRD
Sbjct:  826 QDLPGVGWKLRKRLNEHGIASCSDLWPLSLTHMQKGLGLGEKTGRALWEACRGIDKRPVQAPPDRKSIGAEVNYGVRFDTQAQADGFLSELAEELSRRMVAEGVLGQALTLKIMKQRD 943

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BLAST of mRNA_H-paniculata_contig18042.4356.1 vs. uniprot
Match: UPI001C721764 (DNA repair protein REV1 isoform X1 n=2 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI001C721764)

HSP 1 Score: 119 bits (299), Expect = 1.170e-28
Identity = 52/116 (44.83%), Postives = 81/116 (69.83%), Query Frame = 0

Query:   15 DLPGVGWKLRRRLNEENMNICSDLWPLPVARLQKGFGLGEKTGQALWEACRGIDNRPVQAPPDRKSIGAEVNYGVRFDTQAQANDFVSKLAVELSSRMDVEEVVGRALTLKIMKQR 130
            DLPGVG++  ++  +  +  C DL  L +A+LQ+ FG   KTG++++  CRG+DNR VQ   DRKS+ AE+NYG+RF+T    N F+++LAVE+ +R+ +    G+A+TLK+M +R
Sbjct:  565 DLPGVGYRTSKKFKQRGIVTCGDLQNLSLAKLQQEFG--PKTGESIYNKCRGVDNRVVQVQKDRKSVSAEINYGIRFETDEDVNQFINELAVEVQNRLKIINSKGKAITLKLMVRR 678

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BLAST of mRNA_H-paniculata_contig18042.4356.1 vs. uniprot
Match: A0A8B7Z4U9_ACAPL (DNA repair protein REV1 n=2 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Z4U9_ACAPL)

HSP 1 Score: 119 bits (298), Expect = 1.630e-28
Identity = 60/125 (48.00%), Postives = 80/125 (64.00%), Query Frame = 0

Query:   14 QDLPGVGWKLRRRLNEENMNICSDLWPLPVARLQKGFGLGEKTGQALWEACRGIDNRPVQAPPDRKSIGAEVNYGVRFDTQAQANDFVSKLAVELSSRMDVEEVVGRALTLKIMKQRDVSQPYTT 138
            +DLPGVGW    RL    +  C DL  L +  LQK FG   KTGQ+L+  CRGIDNRP++A  +RKS+ AE+NYG+RF   ++A  FVS+LA E+  R+    +VG+ +TLK+ K R  S P  T
Sbjct:  666 KDLPGVGWSTGARLRTMGIETCVDLQNLSLGALQKEFG--PKTGQSLYSYCRGIDNRPIRAERERKSVSAEINYGIRFTQNSEATRFVSELAEEVHRRLTAIAMVGKTITLKL-KVRQASAPKQT 787

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BLAST of mRNA_H-paniculata_contig18042.4356.1 vs. uniprot
Match: A0A6U9RMQ7_9CHLO (DNA repair protein REV1 n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A6U9RMQ7_9CHLO)

HSP 1 Score: 118 bits (296), Expect = 2.940e-28
Identity = 59/126 (46.83%), Postives = 86/126 (68.25%), Query Frame = 0

Query:   15 DLPGVGWKLRRRLNEENMNICSDLWPLPVARLQKGFGLGEKTGQALWEACRGIDNRPVQAPPDRKSIGAEVNYGVRFDTQAQANDFVSKLAVELSSRMDVEEVVGRALTLKIM-KQRDVSQPYTTL 139
            +LPGVGW  R++L   N++IC+DL  +P + LQ+ FG  +KTG+ L+  CRGID R V+  P RKSIGAEVN+GVRF+ +A+A  F+  L  E+  R+   ++ GR +TLK+  KQ+  ++PY  L
Sbjct:  428 ELPGVGWSTRQKLTAMNIDICADLVEVPKSVLQQEFG--QKTGELLFNHCRGIDGRKVETQPVRKSIGAEVNWGVRFNHEAEAIKFMEDLCGEIQKRLRHAKLKGRCVTLKLKRKQQGANEPYKFL 551

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BLAST of mRNA_H-paniculata_contig18042.4356.1 vs. uniprot
Match: V4AK20_LOTGI (DNA repair protein REV1 n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4AK20_LOTGI)

HSP 1 Score: 116 bits (290), Expect = 1.940e-27
Identity = 51/121 (42.15%), Postives = 82/121 (67.77%), Query Frame = 0

Query:   11 VHAQDLPGVGWKLRRRLNEENMNICSDLWPLPVARLQKGFGLGEKTGQALWEACRGIDNRPVQAPPDRKSIGAEVNYGVRFDTQAQANDFVSKLAVELSSRMDVEEVVGRALTLKIMKQRD 131
            V  +DLPGVGW + R+L+  N+  C DL  +P++ LQK FG   KTGQ+L+ +CRGID+RP++   +RKS+ AE+NYG+RF  + +   F + L+ E+ +R+   +  G+ +TLK+  +R+
Sbjct:  589 VSVRDLPGVGWSMNRKLSNMNVKTCGDLQSVPLSTLQKEFG--SKTGQSLYNSCRGIDDRPIKMENERKSVSAEINYGIRFQKEHECVKFFNDLSEEVHNRLQKVKRKGKVVTLKLKVRRE 707

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BLAST of mRNA_H-paniculata_contig18042.4356.1 vs. uniprot
Match: UPI001425AE76 (DNA repair protein REV1-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425AE76)

HSP 1 Score: 115 bits (288), Expect = 3.590e-27
Identity = 58/121 (47.93%), Postives = 80/121 (66.12%), Query Frame = 0

Query:   15 DLPGVGWKLRRRLNEENMNICSDLWPLPVARLQKGFGLGEKTGQALWEACRGIDNRPVQAPPDRKSIGAEVNYGVRFDTQAQANDFVSKLAVELSSRMDVEEVVGRALTLKIMKQRDVSQP 135
            DLPGVGW ++RRL   ++N C DL  +P+A LQK FG   KTG+ L+  CRG D+R +QA   RKS+ AE+NYG+RF  +++A DFVS++  E+  R+    V G+ +TLK MK R    P
Sbjct:  564 DLPGVGWSMKRRLEALSVNSCGDLQLVPMATLQKEFGA--KTGKHLYNLCRGQDDRAIQAEKQRKSVSAEINYGIRFTKESEAVDFVSEVVEEVHRRLLKISVKGKTITLK-MKVRKPDAP 681

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BLAST of mRNA_H-paniculata_contig18042.4356.1 vs. uniprot
Match: A0A388JX12_CHABU (UmuC domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JX12_CHABU)

HSP 1 Score: 115 bits (287), Expect = 4.950e-27
Identity = 55/120 (45.83%), Postives = 77/120 (64.17%), Query Frame = 0

Query:   11 VHAQDLPGVGWKLRRRLNEENMNICSDLWPLPVARLQKGFGLGEKTGQALWEACRGIDNRPVQAPPDRKSIGAEVNYGVRFDTQAQANDFVSKLAVELSSRMDVEEVVGRALTLKIMKQR 130
            +   DLPGVGW L+ RL  + +N+C +L  L    LQ+ FG+  KTG  LW   RGID+R V+   +RKSIGAEVN+GVRF  +  A+ F+S LA E+  R+   ++ GR  TLK+ K++
Sbjct:  592 LEVSDLPGVGWSLKERLKAKGINLCKELRRLSKEALQREFGV--KTGDMLWAYARGIDHREVKCVQERKSIGAEVNWGVRFTKEEDAHTFLSNLAEEVCGRLSSAQLKGRTFTLKVKKRK 709

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BLAST of mRNA_H-paniculata_contig18042.4356.1 vs. uniprot
Match: UPI00083C6C98 (DNA repair protein REV1 n=1 Tax=Eufriesea mexicana TaxID=516756 RepID=UPI00083C6C98)

HSP 1 Score: 114 bits (286), Expect = 6.640e-27
Identity = 53/116 (45.69%), Postives = 75/116 (64.66%), Query Frame = 0

Query:   12 HAQDLPGVGWKLRRRLNEENMNICSDLWPLPVARLQKGFGLGEKTGQALWEACRGIDNRPVQAPPDRKSIGAEVNYGVRFDTQAQANDFVSKLAVELSSRMDVEEVVGRALTLKIM 127
            + QDLPGVGW    +LN  N+  C++L  +P+A LQK FG  +KTG+ L+  CRGIDN  +     RKS+ AEVNYG+RF++   A DF+ KL  E+ +R+      GR +TLK++
Sbjct:  487 NVQDLPGVGWTTTHKLNNINVRTCAELQKIPLATLQKEFG--KKTGEILYNMCRGIDNGKLNLEHVRKSVSAEVNYGIRFESNDDAIDFLKKLCCEVCNRLSKANAKGRCITLKLL 600

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BLAST of mRNA_H-paniculata_contig18042.4356.1 vs. uniprot
Match: A0A087ST14_AUXPR (DNA repair protein REV1 n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087ST14_AUXPR)

HSP 1 Score: 112 bits (281), Expect = 9.340e-27
Identity = 59/117 (50.43%), Postives = 76/117 (64.96%), Query Frame = 0

Query:   15 DLPGVGWKLRRRLNEENMNICSDLWPLPVARLQKGFGLGEKTGQALWEACRGIDNRPVQAPPDRKSIGAEVNYGVRFDTQAQANDFVSKLAVELSSRMDVEEVVGRALTLKIMKQRD 131
            DLPGVGW   ++L    +   +DL     ARLQ    LG+KTG ALW+A RGID R V  P  RKS+GAEVN+GVRFD+   A  F+ KLA E+ +RM    V GR+LTLK+ K+++
Sbjct:  259 DLPGVGWATSKKLASLGLQSVADLQAWSKARLQAE--LGDKTGAALWDASRGIDTRRVAPPAVRKSLGAEVNWGVRFDSPQDATRFLGKLAEEVWTRMGAAGVQGRSLTLKLKKRKE 373

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig18042.4356.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig18042.4356.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FSG0_ECTSI	2.180e-56	77.97	Terminal deoxycytidyl transferase rev1, putative n...	[more]
A0A6H5L1W8_9PHAE	5.570e-56	78.81	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
UPI001C721764	1.170e-28	44.83	DNA repair protein REV1 isoform X1 n=2 Tax=Paraste...	[more]
A0A8B7Z4U9_ACAPL	1.630e-28	48.00	DNA repair protein REV1 n=2 Tax=Acanthaster planci...	[more]
A0A6U9RMQ7_9CHLO	2.940e-28	46.83	DNA repair protein REV1 n=1 Tax=Picocystis salinar...	[more]
V4AK20_LOTGI	1.940e-27	42.15	DNA repair protein REV1 n=1 Tax=Lottia gigantea Ta...	[more]
UPI001425AE76	3.590e-27	47.93	DNA repair protein REV1-like n=1 Tax=Anneissia jap...	[more]
A0A388JX12_CHABU	4.950e-27	45.83	UmuC domain-containing protein n=1 Tax=Chara braun...	[more]
UPI00083C6C98	6.640e-27	45.69	DNA repair protein REV1 n=1 Tax=Eufriesea mexicana...	[more]
A0A087ST14_AUXPR	9.340e-27	50.43	DNA repair protein REV1 n=1 Tax=Auxenochlorella pr...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.150.20		coord: 12..67 e-value: 3.4E-15 score: 58.1
None	No IPR available	PANTHER	PTHR45990	FAMILY NOT NAMED	coord: 14..131
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 10..13
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..13
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..1
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 14..139
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 2..9
None	No IPR available	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 6..73
IPR017961	DNA polymerase, Y-family, little finger domain	PFAM	PF11799	IMS_C	coord: 71..128 e-value: 2.7E-8 score: 34.5
IPR036775	DNA polymerase, Y-family, little finger domain superfamily	GENE3D	3.30.1490.100		coord: 77..138 e-value: 3.1E-17 score: 64.7
IPR036775	DNA polymerase, Y-family, little finger domain superfamily	SUPERFAMILY	100879	Lesion bypass DNA polymerase (Y-family), little finger domain	coord: 77..126

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig18042	contig	H-paniculata_contig18042:411..1617 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig18042.4356.1	mRNA_H-paniculata_contig18042.4356.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig18042 411..1617 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig18042.4356.1 ID=prot_H-paniculata_contig18042.4356.1|Name=mRNA_H-paniculata_contig18042.4356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
MSICAFITVIVHAQDLPGVGWKLRRRLNEENMNICSDLWPLPVARLQKGF
GLGEKTGQALWEACRGIDNRPVQAPPDRKSIGAEVNYGVRFDTQAQANDF
VSKLAVELSSRMDVEEVVGRALTLKIMKQRDVSQPYTTL

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR017961	DNA_pol_Y-fam_little_finger
IPR036775	DNA_pol_Y-fam_lit_finger_sf